SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene168

Length: 1926 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene168

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative carbamoyl phosphate synthase large subunit n=1 Tax=Nicotiana tabacum RepID=Q8L6J9_TOBAC	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	21%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	85%
Blast2go	ligase activity	GO:0016874	Molecular Function	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR39

Fln msg:

Fln protein: MLDELKVKQPQGGIAKSDEDALAIARKVGYPVLVRPSYVLGGRAMEIVYSDDKLKHYLETAVEVDPERPVLVDKYLADACEIDVDSLTDSKGSVVIGGIMEHIEQAGVHSGDSACSIPTETVSPACLSIIRSWTSKLAKRLGVCGLMNCQYAITPAGEVYLLEANPRASRTVPFVSKAIGHPLAKYAALLMSGKSLQDIGFIQEVIPSHVSVKEAVLPFEKFQGCDVVLGPEMRSTGEVMGIDFKFPMAFAKAQIAANQKLPLVGTVFLSLSDFAKPSLPAIANGFVELGFTIVATTGTASLLKMEGIPVERVLKLHEGRPHAGDMIANGQIHLMVIANSGDALDQIDGRKLRRMALTYKIPIITTVAGALATVQAIKSMKKDSLKMIPLQDFFNTQKSEGTTQELQAASIC*

Protein Length: 414

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTACAGATTATGATACCAGTGATAGACTGTACTTTGAGCCTCTTACAATAGAGGATGTTTTGAATGTCATTGACAAAGAGAGGCCTGATGGTATAATTGTACAGTTTGGAGGGCAAACACCTTTGAATCTAGCTCTACCCATAGAACAATACCTCGATGAGTTTAAGCCCGTGGCTGCAAGTGGAGAAGGTCTTGTGCGAATTTGGGGGACCTCTCCCGCTTCAATAGATGCTGCTGAAGATAGGGAGAAGTTCAATGTA_-_ATGTTGGATGAGTTAAAAGTCAAGCAACCTCAAGGTGGTATTGCTAAGAGTGATGAGGATGCATTGGCCATAGCAAGAAAGGTTGGCTATCCTGTTCTTGTCAGGCCCTCTTATGTTTTAGGTGGTCGTGCAATGGAAATTGTATACAGTGATGACAAATTGAAGCATTACTTAGAAACTGCAGTAGAAGTGGACCCGGAAAGGCCAGTACTTGTTGATAAGTACCTGGCAGATGCTTGTGAGATTGATGTAGATTCTTTGACAGATTCTAAAGGTAGTGTGGTCATTGGTGGTATCATGGAGCACATTGAGCAAGCAGGTGTGCATTCCGGTGATTCAGCTTGCTCTATTCCAACGGAAACAGTCTCACCTGCATGCTTGTCAATCATTAGATCGTGGACATCTAAATTGGCAAAGCGGCTTGGCGTCTGTGGACTGATGAATTGCCAATATGCAATCACACCTGCTGGTGAAGTTTATCTTCTTGAAGCAAATCCTAGAGCATCACGAACAGTACCTTTTGTGTCAAAGGCAATTGGCCACCCCTTAGCAAAGTATGCCGCCCTTCTTATGTCAGGAAAATCTCTTCAAGACATTGGTTTTATACAAGAAGTTATTCCAAGTCACGTATCTGTCAAGGAAGCAGTCCTTCCATTTGAAAAATTTCAAGGCTGTGATGTGGTTCTTGGCCCTGAAATGCGAAGCACTGGAGAAGTGATGGGCATAGACTTCAAATTTCCTATGGCATTTGCCAAGGCACAAATTGCAGCAAATCAAAAACTGCCTCTTGTAGGCACAGTGTTTTTAAGTTTAAGTGATTTTGCCAAACCAAGCCTCCCAGCAATTGCAAACGGATTCGTTGAACTTGGTTTTACAATTGTTGCAACAACTGGCACAGCTAGTTTGTTGAAGATGGAAGGAATTCCAGTGGAAAGAGTTTTGAAACTCCATGAAGGGCGCCCACATGCAGGTGACATGATTGCAAATGGTCAGATTCACTTAATGGTGATTGCAAATTCAGGAGATGCATTAGATCAAATAGATGGGCGGAAGTTGAGACGAATGGCATTAACATATAAAATTCCTATCATAACCACAGTTGCCGGAGCTTTAGCTACTGTTCAGGCTATTAAGAGCATGAAGAAGGATTCGTTGAAGATGATTCCATTACAAGATTTCTTCAATACTCAGAAATCAGAAGGAACAACTCAGGAACTACAGGCAGCTTCTATATGTTGA___TGTTCCATTTAAAATGCAAGTTCACATTTCTTTATGTTGGTGTAATAACAGTTCCTTACGAACTCTGTCGGTGTGCTGTTAGAAGATTTAATGAAAAGGATATAACAGTATTTAATCACATTTTCATCCAAAGCTGTCAATGCAAATTGTCTCTACCTAATGTTGGTGTAAGAATACTTTGTTAGAACTCTGTTGTGGTGTTCTTCCGAGGCAAGATGAAAGGATTATAACAGGCTACACATATCAATGAGATTTCCATCCAAAATATGTCTTCACAAATTGGATGGGACAGCGGAAGAACTATATCAAACTTCTTCTATTGGTGGTTGTGGTTTTCATACTGTATATGCATGTTTCTCTTTTGGTTGTGGAATGTGGTTATTTGCAATTTATAATCCTA

Fln Alignment:

sp_v1.1_unigene168___GIAKSDEDALAIARKVGYPVLVRPSYVLGGRAMEIVYSDDKLKHYLETAVE----VDPERPVLVDKYLADACEIDVDSLTDSKGSVVIGGIMEHIEQAGVHSGDSACSI-----------PTETVSPACLSIIRSWTSKLAKRLGVCGLMNCQYAITPAGEVYLLEANPR
B8LR39_____________GILDSTEEAITVANQIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQAKSEAGAAFGNDGVYLEKYIKNPRHIEFQILADKHGNC-------------IHFGERDCSIQRRNQKLLEEAPSPALTPKLRNAMGDAAVAAALSIGYVGVGTVEFLLDESGDFYFMEMNTR

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
905	11			88	0.923564
906	10	70		20	0.999998
907		70	20	10	0.999998
908	70		30		1.0
909	70		30		1.0
982	90		10		0.90298
1003		10		90	0.90298
1066	83			16	0.994512
1067	83		16		0.994512
1068		83	16		0.994512
1069			16	83	0.994512
1449	88		11		0.923564
1544	33		66		0.997452
1580		33		66	0.997452
1808	85			14	0.993533
1810	85	14			0.993533
1811	14			85	0.993533
1816			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain