SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene165

Length: 1709 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene165 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin heavy chain, putative	-	-	2.0e-30	31%
FL-Next	sp=Kinesin-4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	35%
Blast2go	kinesin heavy	-	-	1.38615e-30	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O81635

Fln msg: your sequence is shorter than subject: 379 - 987

Fln protein: NESLSTLKFAERVATVELGAARSNKESGEIRELKEQIYNLRVALAKKEAEVEQFQSNRSTEKQRMKVGVSPLHSHRQSRDIQALSNRRQPMEEVGNIEVRSSSTGRQRKPIYGRDVLGEGADANSPRPIRRSSPERRSLSVERRSLSADRGNHIRNRVKHDPLEEQEVRKWQDKVTVNKYLTIHTAASQDDSLRPMEACELAKQDSISDMFYQRCHANPRKIYPEREDRQFSMDHNEGYGGVKRNKVDVKGKNEYQVRRTPHHETSNTDESDVDLFRTSDFSEADLLQFKELNLIDVAPIQHVPRIRKTMQSSTRTTHHIERRSPIQAKSPSSASRFETKLYGGGGQPKPRTVRQSVSNLPYVGTDGKRTSPGGKFKP*

Protein Length: 380

Fln nts: AATGAGTCACTCAGCACCCTTAAGTTTGCAGAGCGAGTAGCTACCGTTGAACTTGGTGCAGCACGTTCCAATAAAGAAAGTGGAGAGATTCGAGAGCTCAAGGAGCAGATTTATAATTTAAGAGTTGCACTAGCAAAAAAGGAAGCTGAAGTAGAACAGTTCCAAAGTAATCGAAGCACTGAAAAACAAAGGATGAAGGTTGGAGTATCACCATTGCATTCACATAGGCAAAGCAGAGATATTCAAGCACTGTCAAACCGTAGACAGCCAATGGAAGAGGTTGGAAACATAGAGGTTAGAAGCAGTTCCACCGGAAGGCAGAGGAAACCAATCTATGGCAGGGATGTTTTAGGGGAGGGCGCTGATGCAAATTCTCCAAGACCAATCCGTCGATCTTCTCCAGAGAGAAGATCGTTATCTGTTGAAAGGAGATCATTGTCTGCTGATCGTGGAAATCACATAAGGAACAGAGTTAAGCATGATCCATTGGAAGAACAAGAAGTAAGAAAGTGGCAAGACAAGGTGACGGTCAATAAATATTTAACAATTCACACAGCAGCTTCACAGGATGATTCCTTGAGACCAATGGAAGCTTGTGAATTAGCAAAGCAAGACAGCATTTCTGATATGTTCTACCAAAGGTGCCATGCTAATCCAAGGAAAATATATCCAGAGAGAGAAGACAGACAATTCTCGATGGATCACAATGAAGGGTATGGAGGAGTAAAGAGGAATAAAGTTGATGTAAAAGGGAAGAATGAATATCAAGTGCGAAGAACTCCTCACCATGAAACATCAAATACAGATGAATCAGATGTAGATCTGTTTCGAACTAGTGATTTCTCTGAAGCAGATTTGTTGCAATTTAAGGAACTTAATCTTATTGACGTAGCTCCCATACAACATGTTCCACGAATCAGAAAGACAATGCAATCCTCTACAAGGACCACTCATCACATAGAGCGGAGAAGTCCAATCCAAGCAAAAAGCCCTTCTTCAGCAAGCAGATTTGAAACTAAGTTATATGGAGGTGGTGGGCAGCCAAAACCCCGAACAGTGAGGCAGTCAGTTTCTAACCTGCCTTATGTGGGAACAGATGGAAAGAGAACTTCACCTGGAGGGAAATTTAAACCTTGA___TATCAAGGTGGCTTCCAGTAAGTATCCATTTGACAGTCCATTCCAATGATTTCTACTTTTTGCTCTGGTTGCAATTTGCACCACTTTCACCTCAAGGATCATCTATCGAGTACTATGACATTGCGAGGCAGCCGGTTCTAACTCAGATTGGGGAGTTATCATCCAAACCATCAAAACGATGGCATGGCATGGCCCTGGGTGTTGTTGTTGAGTATCTTTACACATCTGAGCTCATTTGATTATTCTTTTCTTGACTATTTATTGGATCATAAAGAGGTCTAGAGTGCAGTGGAATAGATTATACAGTTTGGGTGTAAGAATGGAATTGCGTCTTATTTTTCCATGTTTTGTAGTGTGATGTACATAATTTGAGCCGACGCTATCGTTGTGATGCTCTTACAGAATCAGTCATATCAGGCTGTTTAAGTAAGAGGCTTTTGTATTTTTTAGAGTACACCGGTTATGATTCATTTTGTGAAAATTCCTTGGGATCAGTATCTCAACCTATATGCTGTGGTGATTTTGAGTTGTATACAGTCTACCATCTACAGAAATATCAATCACTTTTCAAA

Fln Alignment:

sp_v1.1_unigene165___ESLSTLKFAERVATVELGAARSNKESGEIRELKEQIYNLRVALAKK-----------EAEVEQFQSNRSTEKQRMK-----VGVSPLHSHRQSRDI--------QALSNRRQPMEEVGNIEVRSSSTGRQRKPIYGRD
O81635_____________ETISTLKFAERVGSVELGAARVNKDNSEVKELKEQIANLKMALVRKGNGNDVQPTAIPINRERISRRRSLETPTIRPKLPTMGNTSNNSRPQIMDLSGPEAFNDSTASSRRHSLDI--HELMKSSSPAWPRQPLNGKD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
620		33		66	0.997452
895	84		15		0.999986
1028		11		88	0.923564
1029		11	88		0.923564
1030		11		88	0.923564
1032	11			88	0.923564
1080			85	14	0.993533
1176		20		80	0.995493
1178		20		80	0.995493
1299		83		16	0.994512
1624	66		33		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
380	394	GCCAT GCCAT GCCAT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain