SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene161

Length: 2843 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene161
ATGGGGACACACGTGTCACATGAAAATATTGGTTGCAGCTGCTCTCGAGGCAGAGTTGTGAAGTTTCTCAGTTTCATCCCGAACGTAGAGTGATCGGAAGGGGATTGGAACCTGTGGCCTTCTAAATACACCGAGTTGCAGAGGCAGAGCAATGGCGGGCTCTGTAACTGCTACCCCCCTGCCATCAGCCAGCGACTATTTATTTTTACGGTCGAGCTTCAAGCCCAATTTCAGAAAGCTGCCGACGAGAGTTAAGCTGGGAAGGCTCCGGTTTAAAGTCTCTGCCTCGCTCGCTGAAGGCGAGAGAGTAACGGCGGACAATGAAAAAGACAATCCTGACAAAACGTTCATTGAGTACGAGGGCAACGGTTCGAATCGCAGAAGCAGCAATGGAGCTGCATACAAAGTCGTCGAGGATTCTAGTTCCTTTACTTTGAATTCGAAGTCGAACGGCTCTGTTCTTCTGTCTACGAACGGAACGGCTAGGGTTTCTGGTAATGGCAGCGCGAGAAGTAGAGCATTAGTCAAGAAGACGATTACTGATGGGAATGCCACGGGAGGCATGAACATTAACGGTTCAGTCAGCGACAATAGGCAGGAGAGTGGCGGTTTTGGGAGGGTCAATGAGCTCGGGCAAGAGGTGCCGTGGTTTAAGCAGGACGGACGGGAAAATCTTCAGGTTTCTGTGGCTGCTGGTGGTCAATGGAACAAGTTCAAAACATACTCAACAATACAAAGATCTCTAGAAATATGGGGCTTTGTTATTACTTTCTTGTTTAAGGCATGGGTTAATAATCAAAAATTTATCTATAAAGGTGGAATCACTGAGGAGAAAAAGAAAGAAAAGCGCAAAGCATTGGCCAAGTGGTTGAAGGAAGGACTCTTGAAATTAGGACCAACATTCATCAAAATTGGGCAACAATTTTCCACTAGGGTGGACATTCTTGCACAAGAATATGTTGACCAATTGGCAGAGCTTCAGGACCAAGTGCCCCCATTTGACTCTGAAACTGCAGTTGCTATAGTGCAAAAGGAATTAGGAAAGCCAGTGGATCAGATTTTTGAAAGGTTTGACCGTGATCCAATTGCTGCTGCTAGTCTTGGCCAGGTACACCGTGCAAGGTTGAGAGGTCAGGAAATTGTAGTGAAGGTTCAGAGGCCAGCACTCAAGGAACTCTTTGATATTGATCTGAAGAACTTAAGGGTCATCGCAGAATACTTGCAAAAGATTGATCCTAAGTCAGATGGTGCTAAAAGGGATTGGGTTGCTATTTATGATGAATGTGCAACAGTTCTATATCAGGAAATCGATTACAGCAAGGAAGCTGCAAATGCAGAGTTATTTGCAAAAAACTTTAGGAATATAGATTATGTAAAGGTTCCAAAAATCTATTGGGAATTCACAACAGCACAGGTCCTCACAATGGAGTACGTTCCAGGCATCAAAATAAACAGGATTTCTGCCTTAGATCAGCTTGGGGTTGATCGGCAGAAGTTGGCAAGATATGCTGTAGAGTCTTACTTGGAGCAAATTCTACGCCATGGATTTTTTCATGCAGATCCTCATCCAGGGAATATAGCTGTGGATGATGCAAATGGTGGTCGACTCATTTTTTATGATTTTGGCATGATGGGAAGCATCAATCCAAATATAAGAGAAGGACTTTTGGAGACATTTTATGGAGTATACGAAAAGGATCCTAACAAGGTGTTACAAGCCATGATTCAGATGGGAGTTTTAGTGCCTTCTAGTGACATGACTGCTGTCAGGCGTACAGCGCAATTTTTCCTTAACAGTTTTGAAGAACGCTTGAATGTTCAGAAGCAAGAGAAAGAAACAGCAAAATCTGAGCTTGGATTTAAAAAGCCATTAACCAAGGAAGAGAAAGTGGAGAAGAAAAAGCTCCGACTTGCAGCTATAGGAGAGGATCTGCTGTCTATCGCGGTGGATCAACCCTTCCGTTTTCCAGCTACATTCACATTTGTAGTTAGAGCATTCTCAGTGTTGGATGGCATTGGAAAAGGTCTTGACCCTCGTTTTGATATATCTGAAATTGCTAAGCCGTATGCAATGGAATTGCTACGATTTCGTGAGGCTGGTATTGAAGTCCTTGTAACGGATTTCAAAAAGAGATGGGATCGACAGTCACGTGCATTTTCTAATCTCTTTAGACAGGCTGACAGAGTTGAAAAACTTGCTGAGGTTATTCAACGCCTGGAACAAGGAGATTTGAAGCTCCGGGTTCGCACACTGGAGTCAGAACGAGCATTCAAACGAGTTGCTTCTGCTCAAAAGGCGATAGGAAATGCTGTCATGGCAGGAACCTTAGTTAATCTGGCTACAATTTTGTACATCAATTCCATTCGGATGCCAGCTATGGCTGCATACATGGGAAGTGCAATTTTTGGCATGCAAGTGCTTCTTGGTGTGCTGAAAATCCGAAGGTTGGACCAACAGGAGAGACTTATAACAGGCACTGCTTGAGGAAGGCATTGGAAGAGATTTCTTGTTAAAAGTTTTGGTTGTATTTTTTTTAAAGCTTCAATTGTCATCAATTTTCATCGACATAATCTTTTTATATAATATATATTAGGAATTGAAATTTAACATAGATTTCTTGTTGCCACTGTAAAAATTGGTGAGGCGACAATTTCAAAATGGTGTTCTTGTATGTAACAATATTTTGTTGTTCTGTTTGGAACAAATGCATTTTATATTTCGTAAATGCACAAATGACGATACATTATAAAAGCATACATCTATGGGCAAAGCATGCACACATTCACACCCTTTGCTATGTAAGTGAGAATAAAGCATGTTTACTTTGGCCCTGACTAAAAAG

Ace file of the UniGene sp_v1.1_unigene161

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATATH13; transporter	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	abc transporter-like	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC-1	IPR004147	-	0.0	84%
Blast2go	Protein kinase-like domain	IPR011009	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX04

Fln msg:

Fln protein: MAGSVTATPLPSASDYLFLRSSFKPNFRKLPTRVKLGRLRFKVSASLAEGERVTADNEKDNPDKTFIEYEGNGSNRRSSNGAAYKVVEDSSSFTLNSKSNGSVLLSTNGTARVSGNGSARSRALVKKTITDGNATGGMNINGSVSDNRQESGGFGRVNELGQEVPWFKQDGRENLQVSVAAGGQWNKFKTYSTIQRSLEIWGFVITFLFKAWVNNQKFIYKGGITEEKKKEKRKALAKWLKEGLLKLGPTFIKIGQQFSTRVDILAQEYVDQLAELQDQVPPFDSETAVAIVQKELGKPVDQIFERFDRDPIAAASLGQVHRARLRGQEIVVKVQRPALKELFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECATVLYQEIDYSKEAANAELFAKNFRNIDYVKVPKIYWEFTTAQVLTMEYVPGIKINRISALDQLGVDRQKLARYAVESYLEQILRHGFFHADPHPGNIAVDDANGGRLIFYDFGMMGSINPNIREGLLETFYGVYEKDPNKVLQAMIQMGVLVPSSDMTAVRRTAQFFLNSFEERLNVQKQEKETAKSELGFKKPLTKEEKVEKKKLRLAAIGEDLLSIAVDQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDISEIAKPYAMELLRFREAGIEVLVTDFKKRWDRQSRAFSNLFRQADRVEKLAEVIQRLEQGDLKLRVRTLESERAFKRVASAQKAIGNAVMAGTLVNLATILYINSIRMPAMAAYMGSAIFGMQVLLGVLKIRRLDQQERLITGTA*

Protein Length: 779

Fln nts: ATGGGGACACACGTGTCACATGAAAATATTGGTTGCAGCTGCTCTCGAGGCAGAGTTGTGAAGTTTCTCAGTTTCATCCCGAACGTAGAGTGATCGGAAGGGGATTGGAACCTGTGGCCTTCTAAATACACCGAGTTGCAGAGGCAGAGCA_-_ATGGCGGGCTCTGTAACTGCTACCCCCCTGCCATCAGCCAGCGACTATTTATTTTTACGGTCGAGCTTCAAGCCCAATTTCAGAAAGCTGCCGACGAGAGTTAAGCTGGGAAGGCTCCGGTTTAAAGTCTCTGCCTCGCTCGCTGAAGGCGAGAGAGTAACGGCGGACAATGAAAAAGACAATCCTGACAAAACGTTCATTGAGTACGAGGGCAACGGTTCGAATCGCAGAAGCAGCAATGGAGCTGCATACAAAGTCGTCGAGGATTCTAGTTCCTTTACTTTGAATTCGAAGTCGAACGGCTCTGTTCTTCTGTCTACGAACGGAACGGCTAGGGTTTCTGGTAATGGCAGCGCGAGAAGTAGAGCATTAGTCAAGAAGACGATTACTGATGGGAATGCCACGGGAGGCATGAACATTAACGGTTCAGTCAGCGACAATAGGCAGGAGAGTGGCGGTTTTGGGAGGGTCAATGAGCTCGGGCAAGAGGTGCCGTGGTTTAAGCAGGACGGACGGGAAAATCTTCAGGTTTCTGTGGCTGCTGGTGGTCAATGGAACAAGTTCAAAACATACTCAACAATACAAAGATCTCTAGAAATATGGGGCTTTGTTATTACTTTCTTGTTTAAGGCATGGGTTAATAATCAAAAATTTATCTATAAAGGTGGAATCACTGAGGAGAAAAAGAAAGAAAAGCGCAAAGCATTGGCCAAGTGGTTGAAGGAAGGACTCTTGAAATTAGGACCAACATTCATCAAAATTGGGCAACAATTTTCCACTAGGGTGGACATTCTTGCACAAGAATATGTTGACCAATTGGCAGAGCTTCAGGACCAAGTGCCCCCATTTGACTCTGAAACTGCAGTTGCTATAGTGCAAAAGGAATTAGGAAAGCCAGTGGATCAGATTTTTGAAAGGTTTGACCGTGATCCAATTGCTGCTGCTAGTCTTGGCCAGGTACACCGTGCAAGGTTGAGAGGTCAGGAAATTGTAGTGAAGGTTCAGAGGCCAGCACTCAAGGAACTCTTTGATATTGATCTGAAGAACTTAAGGGTCATCGCAGAATACTTGCAAAAGATTGATCCTAAGTCAGATGGTGCTAAAAGGGATTGGGTTGCTATTTATGATGAATGTGCAACAGTTCTATATCAGGAAATCGATTACAGCAAGGAAGCTGCAAATGCAGAGTTATTTGCAAAAAACTTTAGGAATATAGATTATGTAAAGGTTCCAAAAATCTATTGGGAATTCACAACAGCACAGGTCCTCACAATGGAGTACGTTCCAGGCATCAAAATAAACAGGATTTCTGCCTTAGATCAGCTTGGGGTTGATCGGCAGAAGTTGGCAAGATATGCTGTAGAGTCTTACTTGGAGCAAATTCTACGCCATGGATTTTTTCATGCAGATCCTCATCCAGGGAATATAGCTGTGGATGATGCAAATGGTGGTCGACTCATTTTTTATGATTTTGGCATGATGGGAAGCATCAATCCAAATATAAGAGAAGGACTTTTGGAGACATTTTATGGAGTATACGAAAAGGATCCTAACAAGGTGTTACAAGCCATGATTCAGATGGGAGTTTTAGTGCCTTCTAGTGACATGACTGCTGTCAGGCGTACAGCGCAATTTTTCCTTAACAGTTTTGAAGAACGCTTGAATGTTCAGAAGCAAGAGAAAGAAACAGCAAAATCTGAGCTTGGATTTAAAAAGCCATTAACCAAGGAAGAGAAAGTGGAGAAGAAAAAGCTCCGACTTGCAGCTATAGGAGAGGATCTGCTGTCTATCGCGGTGGATCAACCCTTCCGTTTTCCAGCTACATTCACATTTGTAGTTAGAGCATTCTCAGTGTTGGATGGCATTGGAAAAGGTCTTGACCCTCGTTTTGATATATCTGAAATTGCTAAGCCGTATGCAATGGAATTGCTACGATTTCGTGAGGCTGGTATTGAAGTCCTTGTAACGGATTTCAAAAAGAGATGGGATCGACAGTCACGTGCATTTTCTAATCTCTTTAGACAGGCTGACAGAGTTGAAAAACTTGCTGAGGTTATTCAACGCCTGGAACAAGGAGATTTGAAGCTCCGGGTTCGCACACTGGAGTCAGAACGAGCATTCAAACGAGTTGCTTCTGCTCAAAAGGCGATAGGAAATGCTGTCATGGCAGGAACCTTAGTTAATCTGGCTACAATTTTGTACATCAATTCCATTCGGATGCCAGCTATGGCTGCATACATGGGAAGTGCAATTTTTGGCATGCAAGTGCTTCTTGGTGTGCTGAAAATCCGAAGGTTGGACCAACAGGAGAGACTTATAACAGGCACTGCTTGA___GGAAGGCATTGGAAGAGATTTCTTGTTAAAAGTTTTGGTTGTATTTTTTTTAAAGCTTCAATTGTCATCAATTTTCATCGACATAATCTTTTTATATAATATATATTAGGAATTGAAATTTAACATAGATTTCTTGTTGCCACTGTAAAAATTGGTGAGGCGACAATTTCAAAATGGTGTTCTTGTATGTAACAATATTTTGTTGTTCTGTTTGGAACAAATGCATTTTATATTTCGTAAATGCACAAATGACGATACATTATAAAAGCATACATCTATGGGCAAAGCATGCACACATTCACACCCTTTGCTATGTAAGTGAGAATAAAGCATGTTTACTTTGGCCCTGACTAAAAAG

Fln Alignment:

sp_v1.1_unigene161___MAGSVTATPLPSASDYLFLRSSFKPNFRKLPTRVKLGRLRFKVSASLAEGERVTADNEKDNPDKTFIEYEGNGSNRRSSNGAAYKVVEDSSSFTLNSKSNGSVLLSTNGTARVSGNGSARSRALVKKTITDGNATGGMNINGSVSDNRQESGGFGRVNELGQEVPWFKQDGRENLQVSVAAGGQWNKFKTYSTIQRSLEIWGFVITFLFKAWVNNQKFIYKGGITXXXXXXXXXXXXXXXXXGLLKLGPTFIKIGQQFSTRVDILAQEYVDQLAELQDQVPPFDSETAVAIVQKELGKPVDQIFERFDRDPIAAASLGQVHRARLRGQEIVVKVQRPALKELFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECATVLYQEIDYSKEAANAELFAKNFRNIDYVKVPKIYWEFTTAQVLTMEYVPGIKINRISALDQLGVDRQKLARYAVESYLEQILRHGFFHADPHPGNIAVDDANGGRLIFYDFGMMGSINPNIREGLLETFYGVYEKDPNKVLQAMIQMGVLVPSSDMTAVRRTAQFFLNSFEERLNVQKQEKETAKSELGFXXXXXXXXXXXXXXXXXAAIGEDLLSIAVDQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDISEIAKPYAMELLRFREAGIEVLVTDFKKRWDRQSRAFSNLFRQADRVEKLAEVIQRLEQGDLKLRVRTLESERAFKRVASAQKAIGNAVMAGTLVNLATILYINSIRMPAMAAYMGSAIFGMQVLLGVLKIRRLDQQERLITGTA
A9NX04_____________MAGSVTASLLPSATDHLYLRSSFKPDFRRLPTRVKLGRLQIKVSASLAEDDRVMADDEKTNPDKMLMEYEGNGSNRRSSNGTAYKIVENSGSFTLNSKSNGSALMSTNGTARVSGNGSARSRALVKKTITNGAATGDVKINGPVSDKGQASDGSARVNELGQEVPWFKQGGRENLQVSVAAGGQWNKFKTYSTIQRSLEIWGFVITFLFKAWVNNKKFMYKGGITEEKKKEKRKALAKWLKEGLLKLGPTFIKIGQQFSTRVDILAQEYVDQLAELQDQVPPFDSETAVAIVQKELGKPVDQIFERFDRDPIAAASLGQVHRARLRGQEIVVKVQRPALKELFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECATVLYEEIDYSKEAANAELFAKNFRNIDYVKVPKIYWEFTTPQVLTMEYVPGIKINRISALDQLGVDRQKLARYAVESYLEQILRHGFFHADPHPGNIAVDDANGGRLIFYDFGMMGSINPNIREGLLETFYGVYEKDPNKVLQAMIQMGVLVPSSDMTAVRRTAQFFLNSFEERLTAQKQEKETAKSELGFKKPLTKEEKVEKKKLRLAAIGEDLLSIAVDQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDISEIAKPYALELLRFREAGIEVLITDFKKRWDRQSRAFSNLFRQADRVEKLAEVIQRLEQGDLKLRVRTLESERAFKRVASAQKAIGNAVFAGTLVNLATILYINSIRLPAMAAYMGSAMFGMQVLLGVLKIRRLDQQERLITGTA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
2113		14		85	0.999981
2133	10		90		0.90298
2182		80		20	0.999996
2574		88	11		0.923564
2575			11	88	0.923564
2576			11	88	0.923564
2645		22	77		0.999999
2752	54	9		36	1.0
2756	87	12			0.992554
2768		28	71		1.0
2780		83	16		0.994512
2787	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain