SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene156

Length: 1601 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene156

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Vitis vinifera RepID=D7T4F6_VITVI	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	uroporphyrinogen decarboxylase	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uroporphyrinogen decarboxylase (URO-D)	IPR000257	-	0.0	86%
Blast2go	Uroporphyrinogen decarboxylase HemE	IPR006361	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKE9

Fln msg: your sequence is longer than subject: 392 - 178

Fln protein: MASIHCLWPRLYIIHYPSSNGMPTSPRLKSRVHCAMTESVAKENPSTTAEPLLLRVVRGETVERPPVWLMRQAGRYMKSYQQLCQKYPLFRERSENVDLAVEISLQPWKAFKPDGVILFSDILTPLTGMNIPFDIVKGKGPVIYKPIQTLADVADVQEFIPQESVPYVGEALSILQAEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFAKIKHMAFCMPKVLHALLHIFAESMANYICYQADNGAQVVQIFDSWATELSPVDFEEFSLPYLKYIVESVKKTHPNLPLILYASGSGGLLERLPLSGVDVISLDWTVDIAEARRRIGIDIAVQGNVDPGALFGSKDFITKRIYDTVSKAGNKKHILNLGHGVLLGTPEDNVAHFFEVAKGIRY*

Protein Length: 393

Fln nts: ATGGGGGCGGACAGTTCACTTATCGAAGTACGCATACAATTGGACGTGAATTCCGTTAGGAGATAAGGCTATCTACGGGGTATGCAAACAAAACTAGCAGAAGCTTTGTGTAGCGGGGAAGGCATCGAACAACA_-_ATGGCTTCCATCCATTGCCTCTGGCCACGCTTGTACATAATTCATTATCCATCATCAAATGGCATGCCCACTTCTCCACGGCTCAAATCCAGAGTCCATTGTGCCATGACAGAGTCTGTTGCCAAAGAAAACCCTAGTACTACTGCTGAACCACTCCTCCTTCGTGTTGTCCGGGGAGAAACAGTGGAAAGGCCTCCTGTTTGGCTTATGAGACAAGCAGGGAGATACATGAAGAGCTATCAACAATTATGCCAGAAGTACCCCTTATTCCGTGAAAGGTCAGAAAACGTTGATCTTGCAGTTGAAATCTCTTTGCAACCATGGAAAGCTTTCAAGCCAGATGGAGTTATTTTGTTCTCGGACATACTTACTCCTTTGACAGGAATGAATATTCCTTTTGATATAGTTAAAGGAAAAGGTCCAGTTATTTATAAGCCAATCCAGACTTTAGCTGATGTGGCTGATGTTCAAGAGTTTATCCCGCAGGAGTCAGTGCCATATGTTGGTGAGGCACTGTCAATTTTGCAAGCAGAGGTAAACAATGAAGCTGCAGTTCTAGGATTTGTAGGAGCTCCATTTACTCTGGCTTCATATGTTGTAGAAGGTGGATCTTCGAAGCACTTTGCAAAAATTAAGCATATGGCATTCTGTATGCCCAAGGTTCTGCATGCACTGCTGCATATATTTGCAGAGTCTATGGCCAATTACATTTGCTATCAAGCAGACAATGGAGCTCAAGTGGTCCAGATTTTTGACTCTTGGGCAACAGAGCTTAGTCCAGTGGATTTTGAAGAATTCAGTCTTCCTTACTTGAAGTACATTGTGGAGTCTGTGAAAAAAACCCACCCCAACTTGCCCCTAATTCTTTATGCCAGTGGATCTGGAGGATTGCTAGAAAGGCTTCCGTTATCTGGTGTTGATGTTATTAGTCTGGACTGGACAGTTGATATCGCAGAAGCTAGAAGAAGAATAGGAATAGATATTGCAGTGCAGGGTAATGTTGATCCTGGTGCACTCTTTGGATCCAAGGACTTCATTACAAAACGAATTTATGACACAGTGTCTAAAGCAGGAAATAAGAAACACATTCTTAATCTAGGGCATGGTGTGCTATTAGGTACACCAGAGGATAATGTTGCTCATTTTTTTGAGGTGGCAAAAGGGATCAGATATTAG___ATATATTTGAATTTTGATGAAGCTCCAGAGAAAGTGAAAAAGCATTAGTTTTCCTTTATTAAGTTTCTCCCAATTCTTGCATTCTTTGTCCACGGAAACACTTAATTGATGCAAAATCTTTGACCCAGACAGGAAGGCTTTGTGACACAGATGTGTTGGTATTAGTATTTACATCTCTTGGCATGCCAGTTTGGGAAGTCCTGCTGTTGTCAATGAATACGTTTGTTTTTAAATCGAGCTTTTGTTACAGGAAAACAATTGAGGATAAGGTGACCTATTGAGATCTCTTTG

Fln Alignment:

sp_v1.1_unigene156___MAFCMPKVLHALLHIFAESMANYICYQADNGAQVVQIFDSWATELSPVDFEEFSLPYLKYIVESVKKTHPNLPLILYASGSGGLLERLPLSGVDVISLDWTVDIAEARRRIGIDIAVQGNVDPGALFGSKDFITKRIYDTVSKAGNKKHILNLGHGVLLGTPEDNVAHFFEVAKGIRY
A9NKE9_____________MAFCMPKVLHALLHVFAESMANYICYQADNGAQVVQIFDSWATELSPVDFEEFSLPYLKYIVESVKKTHPKLPLILYASGSGGLLERLPLSGVDVISLDWTVDMAEARRRIGIDIAVQGNVDPGALFGSKDFITKRIYDTVSKAGNSKHILNLGHGVLVGTPEDNVAHFFEVAKGIRY

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
455	87		12		0.992554
457		12	87		0.992554
459	87			12	0.992554
460	87		12		0.992554
462		12	87		0.992554
466			12	87	0.992554
467		87	12		0.992554
468	87	12			0.992554
469	87			12	0.992554
471		87		12	0.992554
474		12	87		0.992554
477		12	87		0.992554
910		20		80	0.995493
933			20	80	0.995493
1108	90		10		0.90298
1113		11		88	0.923564
1119		11		88	0.923564
1122		88	11		0.923564
1123	88		11		0.923564
1126			88	11	0.923564
1445	11		88		0.923564
1467	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain