SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene151

Length: 1489 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene151

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPR repeat-containing protein	-	-	4.00001e-41	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	tpr repeat-containing protein	-	-	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKA6

Fln msg:

Fln protein: MGDPRGTEFESLGLHNALHIRFHHLGCHGGDLPGHRPAKEAFRRTTPNRCRYPSLMKRKRFRQTIATLGSNLVCSHSNHQPMSFAVDNVEHEREFESCRLQEKPHRVKRRLVMGFISALFCAQSNYGNVAVARATVSKRVRLKDVENPKLQEALRAAVAGDLENSERIFTELIEEDPEDASVWSNRGSVRLSMDKFDEATNDFSQAIKLAPEASVPFLNRAIAYEALGHYKDAIEDCKSAIVNDPEEFAAWYNLGNVDVRVQDYDGALVAYERASALAPGIAGYRLKQALVLFQLNRPVEARKLVEGLVRKYPNYAEAHAALAAILWSEDRRSSAEDQFTEATIREPLYREIGWVNIALQWPPSIVQALENFLSIK*

Protein Length: 378

Fln nts: _-_ATGGGGGATCCACGGGGTACTGAGTTCGAATCTCTGGGACTTCACAATGCTCTGCATATTCGCTTCCACCACCTCGGCTGCCATGGTGGGGACCTTCCCGGGCACAGACCTGCAAAGGAGGCTTTCCGACGAACAACGCCAAACCGATGCCGATATCCTTCTTTGATGAAAAGAAAGCGGTTCAGACAGACCATAGCCACCCTGGGATCGAATCTCGTATGCTCTCACTCCAACCACCAGCCAATGAGCTTTGCAGTCGACAATGTCGAACACGAGCGGGAGTTCGAATCCTGCCGCCTCCAAGAAAAGCCTCATCGCGTCAAGAGGCGCCTCGTGATGGGGTTTATCTCGGCGCTCTTCTGCGCGCAGAGTAACTACGGTAACGTGGCTGTGGCTAGGGCCACGGTTTCGAAACGGGTGAGGCTAAAAGATGTGGAGAATCCCAAGCTCCAGGAGGCCCTTAGGGCTGCCGTGGCTGGCGATCTGGAGAATTCTGAGAGAATATTCACGGAGCTCATCGAAGAAGACCCCGAGGATGCCAGCGTATGGTCTAACAGAGGGAGCGTGAGGCTTTCCATGGATAAATTCGATGAAGCTACCAACGATTTCTCTCAGGCCATCAAGCTCGCCCCCGAGGCATCTGTACCTTTCCTCAACCGCGCCATAGCATACGAGGCACTTGGTCACTACAAGGATGCAATCGAGGACTGTAAATCAGCCATTGTTAATGATCCTGAGGAGTTTGCTGCATGGTATAATCTGGGGAATGTGGATGTGAGAGTTCAAGACTATGATGGAGCATTAGTTGCATATGAAAGAGCTTCTGCTTTGGCACCAGGCATTGCTGGGTACCGGCTGAAACAAGCACTAGTTCTTTTTCAGTTGAATAGGCCTGTAGAAGCAAGAAAATTAGTGGAAGGTCTTGTTCGTAAATATCCAAACTATGCTGAGGCACATGCTGCTTTAGCTGCCATCCTTTGGAGTGAGGATCGTCGTAGCAGTGCCGAAGATCAGTTCACAGAGGCTACCATAAGGGAACCACTATATAGAGAGATTGGATGGGTGAATATTGCGCTTCAGTGGCCACCCAGTATTGTTCAAGCACTCGAGAACTTCCTTTCCATTAAGTAA___TGTTTCTGGATTATTGGCCAAGCAGTCCATTCAACCGTGGGAGATTCAGTAATGGAAGGCGTACGGAGCATTTGTCTCTTGTTGGTTCCCATTGTTTACATGCTGTATAAAACCTGGAAAGTGCAAGTTACATGTGATCCTTTTGCCTTGGCTCCCCTGTCATATCATTTCAAAAGCTTTCCATTCCTACTCATATGTTATGTGTAAAATCACAAACAGCTTACAGGTAGTCATCAGGTCTGGAAAATTGGTCTTGAAGGAGCAACGTAGTTTTAATAGAATGCAATTGCAAACATTATTTAATGTTCATATTATGTAAATCTTATATGTATGATGGGCGTTGTCAAATTATTCTATG

Fln Alignment:

sp_v1.1_unigene151___PGHRPAKEAFRRTTPNRCRYPSLMKRKRFRQTIATLGSNLVCSHSNHQPMSFAVDNVEHEREFESCRLQEKPHRVKRRLVMGFISALFCAQSNYGNVAVARATVSKRVRLKDVENPKLQEALRAAVAGDLENSERIFTELIEEDPEDASVWSNRGSVRLSMDKFDEATNDFSQAIKLAPEASVPFLNRAIAYEALGHYKDAIEDCKSAIVNDPEEFAAWYNLGNVDVRVQDYDGALVAYERASALAPGIAGYRLKQALVLFQLNRPVEARKLVEGLVRKYPNYXXXXXXXXXILWSEDRRSSAEDQFTEATIREPLYREIGWVNIALQWPPSIVQALENFLSIK
B8LKA6_____________PGTDLRRRLFPRTTPKQCRYPSSIKKKLLRRTTATLGSNPARSHSKLQPMSFAVHNGEDE-EFEPRRLRENPHPVKRRLVMGLISAVFCAQKNYGHVAVARAAVSKRVRLKDVENPKLQEALRAAVAGDLENSERIFTELIEEDPENASGWSNRGSVRLSMDKFDEATADFSKAINLAPEAPVPFLNRAIAYEALGYYKDAIEDCKSAIVNDPEEFAAWYNLGNVDVKVQDYDGALVAYERASALAPGIAGYRLKQALVLFQLNRPVEARKLVEGLVRKYPNYAEAHAALAAILWSEDRRSSAEDQFTEATIREPLYREIGWVNTALQWPPSIVQAMENFLSIK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
858		12		87	0.992554
867		87		12	0.992554
936	90		10		0.90298
937			10	90	0.90298
938		90	10		0.90298
1128	90			10	0.90298
1170		11		88	0.923564
1316		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain