SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene142

Length: 1912 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene142

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SGW9_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	myb-cc type transfactor	-	-	75%

Source	InterPros	Term	Type	Identity
Blast2go	Myb DNA-binding domain, plants	IPR006447	-	75%
Blast2go	Homeodomain-like	IPR009057	-	75%
Blast2go	Homeodomain-related	IPR012287	-	75%
Blast2go	Myb, DNA-binding	IPR014778	-	75%
Blast2go	Myb domain, DNA-binding	IPR017930	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACF5

Fln msg:

Fln protein: MYNARKYPAVSLMPPRSQGPEQHLASPVPMVSNNTNNSPVASGMASKQRLRWTPDLHQRFVDAVTELGGPDRATPKGVLRVMGVTGLTIYHVKSHLQKYRLSKYLPDSMGDGLKSEKKESTDILSNLEAASGVQISEALQMQMEVQKRLHEQIEVQRQLQLRIEAQGKYLQKIIEEQQRLSGALKDGTASASFSLPACTGQPEQAADLKPDPSNLILMPVAAQDGGGTGGASSSVAKHSLNCLSHDESPSFSSQQGPPSPESLGDDESSSGANSPLESPQSGRPPQKKPRLDIMSASSDQQVCRQSKKERAGCDAESLSGSSFQQQDSLPLILNLHHQLPDSHTGLHPLRPSQTAVSGAALSTSPPSQPQNQQLSQKKHAVSSEMSASAHILQESSRDACYPFNSSSSITDLQEGSWA*

Protein Length: 420

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAGCAATCTCGGACCAATTACAGAAGCAATTATACAAGACTGTGACCAGGACTTGGTTTCTGCCTCCTTGTGGTCTGTCCAAG_-_ATGTATAATGCCAGGAAGTATCCTGCAGTTAGTTTGATGCCTCCTAGGTCGCAAGGTCCTGAGCAGCACTTGGCTAGCCCAGTCCCGATGGTTTCAAACAACACAAATAATAGTCCTGTTGCATCTGGGATGGCATCAAAGCAACGTCTCCGGTGGACTCCTGATCTCCATCAGCGCTTTGTGGATGCTGTTACAGAACTTGGTGGACCAGACAGAGCAACGCCAAAAGGTGTTTTAAGGGTTATGGGAGTAACAGGACTTACTATCTATCATGTCAAGAGTCATTTACAGAAGTATCGTTTGTCCAAATACCTTCCAGACTCCATGGGTGATGGCTTGAAGTCAGAAAAGAAAGAATCTACTGATATCCTCTCCAATTTAGAGGCTGCATCAGGAGTGCAAATCTCAGAAGCACTGCAGATGCAGATGGAGGTCCAAAAACGTCTGCATGAGCAGATTGAGGTACAAAGGCAATTGCAGTTGCGCATTGAGGCACAAGGGAAGTATCTGCAGAAGATCATTGAAGAACAGCAAAGACTAAGTGGTGCATTGAAGGATGGTACAGCTTCAGCAAGTTTTAGTTTGCCTGCTTGCACAGGGCAACCTGAACAGGCTGCTGATCTTAAACCAGACCCATCTAACCTGATTCTTATGCCAGTGGCTGCCCAAGATGGTGGAGGAACTGGAGGAGCTTCTAGTTCAGTGGCAAAACATTCTTTGAATTGCTTGTCTCATGATGAATCTCCATCATTTTCTTCACAGCAGGGTCCGCCATCGCCAGAGTCATTAGGAGATGATGAATCATCCAGCGGGGCAAATTCACCTCTGGAAAGTCCACAAAGTGGGCGACCACCCCAGAAGAAACCTAGATTGGACATCATGTCAGCGTCTTCAGATCAGCAGGTTTGTAGGCAGTCTAAGAAGGAGAGGGCAGGGTGTGATGCGGAGTCCCTTTCTGGTTCAAGTTTTCAGCAGCAGGACTCGTTGCCATTAATTTTAAACTTACATCATCAACTGCCAGATTCTCATACTGGTCTACATCCATTGCGACCTTCTCAGACAGCAGTTTCAGGTGCTGCTTTGTCCACTTCACCTCCCTCACAACCCCAGAATCAACAGTTGTCACAGAAAAAACATGCTGTGAGTAGTGAGATGTCAGCTAGTGCACATATTCTTCAAGAATCATCAAGGGATGCATGCTATCCTTTTAACTCTTCCTCGAGCATAACAGATCTACAGGAGGGGAGTTGGGCATGA___GAGAGAGCATGCTTCAGGATAAGTGCATTGTGAAGCAGGAAGGTTGTCATAGTAAAAGTGACTTTGCCTCCTTGAATTTGTACAAGGACCAATTGGTGAGTTCAGTGTAATATGCAAGTTAGCTGCCTTCAATTACAAAATTAGCTAGAGCCTGTTACTGCTCCCGGTATTATTTAAGGCTGTATATCAACTCTGATTTAGATGTCTGTAAAGTAAATCACAATTTGATTAATTTTGGTGATAAATGGCCTGCATTCCCTAAATGGGTACATCCATCCAGCAAGGTGATTTTCTAGCCATGGGAATGGAAGTAGTGAGATCCAGTCTGTGACACCAGATCAGATGCTTCTGGCCTGGCTCTAATGATATTTATGATTAATTGCTGGACTTTGTTCTCAAATTGTTGATTACCTTGATCTTCGGGAATGCTTATTTCATGTGGCTTTCTGAAAGCTTGTTTACAAATCCAAACTTGTACTGCTGCCAACTTTACTGTTAATATAAAATGGCTTTCTCCTCTTCAACTTTTGTAACATCAGCTTCCGT

Fln Alignment:

sp_v1.1_unigene142___MYNARKYPAVSLMPPRSQGPEQHLASPVPMVSNNTNNSPVASGMASKQRLRWTPDLHQRFVDAVTELGGPDRATPKGVLRVMGVTGLTIYHVKSHLQKYRLSKYLPDSMGDGLKSEKKESTDILSNLEAASGVQISEALQMQMEVQKRLHEQIEVQRQLQLRIEAQGKYLQKIIEEQQRLSGALKDGTASASFSLPACTGQPEQAADLKPDPSNLILMPVAAQDXXXXXXXXXXVAKHSLNCLSHDXXXXXXXXXXXXXXXXLGDDESSSGANSPLESPQSGRPPQKKPRLDIMSASSDQQVCRQSKKERAGCDAESLSGSSFQQQDSLPLILNLHHQLPDSHTGLHPLRPSQTAVSGAALSTXXXXXXXXXXXXXKKHAVSSEMSASAHILQESSRDACYPFNSSSSITDLQEGS
D5ACF5_____________MYNARKYPAVSLMPPRSQGPEQHIASAVPITSNNANCSPVASGMASKQRLRWTPELHQRFVDAVTELGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLSKYLPDSMGDGLKSEKKESTDILSNLDAASGVQISEALQMQMEVQKRLHEQIEVQRQLQLRIEAQGKYLQKIIEEQQRLSGALKDGTTSASFSLPACTGQPEQASDLKPDPSNLIPMPVASQDGGGTGGASSSVAKHSLNCLSHDESPSFSSQQGPPSPDSLGDDESSSGANSPLESPRSGKPPQKKPRLDIMSASSDQQVCKQSEKERAGFDAESLSGSSFQHRDSRPLILNSHHQLPDSHTGLHPFRPSQTAGSAAALPTSPTSQPRNQLLSQTKHAVSSEMSASAHMLQQSSRDAFYPFNSASSMTDLQEGS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1089		63	36		1.0
1182	14			85	0.993533
1191			66	33	1.0
1822			9	18	0.999994

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain