SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene138

Length: 1586 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene138 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ISI1; ISI1 (IMPAIRED SUCROSE INDUCTION 1); binding	-	-	4.99997e-41	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	impaired sucrose induction 1-like protein	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	sucrose mediated signaling	GO:0009745	Biological Process	0.0	62%
Blast2go	regulation of carbohydrate metabolic process	GO:0006109	Biological Process	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN48

Fln msg: atg_distance in limit (1-15): atg_distance = 1,

Fln protein: MGVEGENGNNR*ARGAITGIEADQSEMYLNKPPWSDDLVHPSSSSPSASSTALPGGVVDLVKSLNKQRLYRELTLALRTTLRDATAEYSFLRVKGLGKLLKFLGSVVESENMIELFRETQTFTEFQVVPVLFHYSIAPSKSGRVPKSDDKSSEEHRKISSLPTSNEVALALQVLEGCCLLDRDSRTLAQQHMAIKEIVRLLSAGSTLVQSACLDALIALMLDSLENQKEFERHHGVRKVAELVKNGYINEQLRLKCAEFLLLVVGNVLPSSSKFIDNIEDEGREEPSRIKSVQDDILELLGEEIASLLWAAGQLWSSIDSRKKANFITISGSTAFRLFGFQR*

Protein Length: 344

Fln nts: _-_ATGGGGGTGGAAGGAGAAAACGGTAACAACAGGTGAGCGCGTGGGGCAATTACAGGCATCGAAGCAGACCAATCCGAAATGTATCTCAACAAGCCGCCCTGGTCCGACGATTTGGTCCATCCTTCCTCTTCATCACCTTCCGCTTCTTCGACAGCCTTACCTGGTGGGGTCGTAGATTTGGTAAAATCGCTGAACAAGCAGAGGCTCTACAGAGAGCTCACTCTCGCCCTTAGAACCACCCTAAGGGATGCCACCGCTGAGTATTCGTTTCTTCGAGTCAAGGGACTAGGGAAGCTTTTGAAGTTCTTGGGCTCGGTCGTGGAATCGGAGAACATGATTGAGCTTTTCCGCGAGACTCAGACTTTTACAGAATTTCAAGTGGTGCCAGTTTTGTTTCATTATTCAATTGCTCCTTCAAAAAGTGGCCGAGTTCCGAAATCAGATGATAAATCTTCTGAAGAGCACAGAAAAATTTCTAGTCTTCCTACAAGTAATGAAGTGGCCCTGGCTCTCCAGGTATTGGAAGGGTGCTGTCTCTTGGACAGGGATAGCAGGACTTTGGCACAACAGCATATGGCCATAAAGGAAATAGTGAGATTGCTGTCTGCTGGTAGCACACTTGTACAGAGTGCTTGCTTGGATGCTTTGATTGCATTAATGCTGGACTCGTTGGAGAATCAGAAGGAGTTTGAACGACATCATGGAGTTAGAAAAGTTGCAGAGTTGGTAAAAAATGGTTACATTAATGAACAATTGAGGTTAAAATGTGCAGAATTCTTATTATTGGTCGTCGGGAATGTGCTTCCTTCCTCAAGTAAGTTTATAGACAATATAGAAGATGAAGGACGGGAAGAGCCATCAAGAATAAAGAGCGTACAAGATGACATTTTAGAACTTCTTGGAGAAGAAATTGCATCTCTCTTATGGGCAGCAGGTCAACTATGGTCATCAATTGATTCTAGAAAAAAAGCAAACTTCATTACAATTTCAGGCTCAACAGCTTTTAGACTGTTTGGATTCCAAAGATGA___TGACGCTGCATTGACATTGTAACAAGTTTGAATCTTTGCTTGCTTTTTATTTTGATTTAAGTTTATGCAAGATTCTGGTTGGTATGCTTGTCTGTTCTAATCTGTTCTTTATGGGAAGGATTTACCATGCTGCATGCTATATTGTTCTCAAACATCACAACTACCAAATAGGCATTTTGAGGTAAAACACAGGCTTAATTGCCGAAGTGTCTGTAAGGTAACTTGATCCAGTAGTGCAGTGCCAGCTAGGAAACTTGTTAACAACTGTATTTTTTGCACAAGCTTGCTTTATTTTGTTCATCATTCAGAGAACAGTCGCACGTCTTTTTGATCATACTATGTTTAGATCATCTTACAATTGTATTACTATTGTGATTCCTTCATAATATTTCCTCGAAAGTTGAAACTAGTCATACATCAGGCAAGTTCAATGCTTGCATGAGAGATAGTGCAAGATCTAAAGACAGACAAAAACTTGTAAGATATTATTGGAATATTTTTGCATCCTATGAGTAGTCAGCAGCTGTGTGTGCTGTAATCATGGGAACTATGTGCCT

Fln Alignment:

sp_v1.1_unigene138___MGVEGENGNNR*ARGAITGIEADQSEMYLNKPPWSDDLVHXXXXXXXXXSTALPGGVVDLVKSLNKQXXXXXXXXXXXXXXXXXXAEYSFXXXXXXXXXXXXXXXXVESENMIELFRETQTFTEFQVVPVLFHYSIAPSKSGRVPKSDDKSSEEHRKISSLPTSNEVALALQVLEGCCLLDRDSRTLAQQHMAIKEIVRLLSAGSTLVQSACLDALIALMLDSLENQKEFERHHGVRKVAELVKNGYINEQLRLKCAEFLLLVVGNVLPSSSKFIDNIED-EGREEPSRIKSVQDDILELLGEEIASLLWAAGQLWSSIDSRKK
A9NN48_____________MFVEGGNGSIRRGRGAITGIEAYQSQMYLNNPPWSEDLLHSSSSSSSASSSALPGGVVDLVKSLNKQRLYREITLALRTTLRDATAEFSFLRVKGLGKLLKFLGSVVESENMIALFRETQTFTKFQVVPVLFHYSIAP-KSGLVPKLDDKSSEEHTKIASPPTSNEVALALQVLEGCCLLDRDSRTLAQQHMAIKEIVRLLSAGSTLVQRACLDALIALMLDSLENQKEFERHHGVRQVAELVKNGNIDEELRLKCAEFLLLVVGNVIPSSSKFIDNIEDEEGREEPSRIESVQDDILELLGEEIASLLWAAGQLWSSIDSERK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1184	50	50			1.0
1394	12		87		0.992554
1424	12	87			0.992554
1473			87	12	0.992554
1476	87		12		0.992554
1477			87	12	0.992554
1480		12		87	0.992554
1481	12		87		0.992554
1483	87	12			0.992554
1484		25	75		1.0
1485	12	12	75		0.975346
1486	87	12			0.992554
1487	12		87		0.992554
1488	75		12	12	0.975346
1492	14			85	0.993533
1498		83	16		0.994512
1516		20		80	0.995493
1533		40		60	1.0
1534		20	80		0.995493
1578		33	66		0.997452
1579	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain