SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene135

Length: 2984 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene135
CTCGGTATCAACATGCAGCAGTCTTTGTAGACGCAAGGTTGCATGTTTCAGGAGGTGCTCTCAGGGGAGGAAGAATGGTAGAGGGGCTTCCTGCAATCTCAGTACTTGATACATCTGCTGGATTTTGGGTTGATCGAAATGGAGTTGTTTCATCTCCTCGGACAAATAAATCTCACACAGAATTTGATTCATCTTTGGATCTTCTAAAGCGTTGTCGGCATGCAGCAGCTTCTGTTGGCAATCAAATATATATATATGGTGGATTAAGAGGAGAGATTTTGCTTGATGATCTTCTAGGGTCAGAAGATACAGCAAGCAGAAGGGGCACTGAAGTTAATTATTACACACTTGAACAGCTTCATAAATCAGCCTTTTCAAATAGAACGCCTACGGAGAATAGTGCTCCTCATGTCGACTCTCCTAGTGTGCCCATGGACAATAAAGGGCTTGAGACATTGGAGAAGGCATCTGCTGCTGAGGCTGAAGCAGTGATTGCACATTTTAATGCTGCTAAGGCAGCTGCGGCGATGGATATGGAAGGTGAGGAGAGGCCAAAAGAAGAGAAGGAATCTACTCATGAAGGAATTGAGAATAATGTTGCCTCAGGGTCTAACTTGGCATCTGATTTAGATGATCCTGTTAAATCGGATGTTCGCCTTCATCACAGAGCAGTTGTAGTTGCTAAAGAACCCGTAGGTAGCTTGGGCAGTCTAGTGCGGCAGCTATCTTTGGATCAATTTGAGAATGAGGGCAGGCGAATGAGCCCTTGGAATCTTGACCAGGCACATGCTGCTAAAAGGCTGCTTACAAAACAAAAGTCTCCTGTTGCTTTGCATAAAAAGGTCATTTCTTCTTTGCTGAGGCCTCGTAACTGGAGGCCTCCTGTAAATAGGGGATTCTTCTTGGATTCCTATGAAGTGGGTGAGCTATGTTATACTGCAGAACAAATCTTCATGCATGAGCCAACAATCCTACAATTAAAGGCTCCAGTCAAAATATTTGGTGATCTTCATGGACAATTTGGTGATTTAATGCGATTGTTTGATGAGTATGGATTTCCTTCAACTGCGGGAGATATTACGTATATTGACTACCTCTTTTTGGGAGATTATGTTGATCGTGGTCAGCACAGTTTAGAAACTATTACCTTGCTTCTTGCGCTTAAGATTGAGTATCCTGACCATGTACATTTGATTCGCGGAAATCATGAAGCTGCTGACATCAATGCTCTCTTTGGCTTTCGACTTGAATGCATCGAACGAATGGGAGATAGAGATGGCATATGGGCATGGACACGCTTTAACCAGCTTTTCAATTGGTTACCCTTATCTGCTCTTATAGAAAGAAAGATTATCTGTATGCATGGTGGGATTGGAAGATCTATAAACTTCTTGGAACAGATAGAGAGCCTGCAACGGCCGATAAGCATGGATGCAGGATCAATTGTTCTTATGGATCTTCTGTGGTCCGATCCAACAGAGAATGATAGTGTAGAAGGCTTGCGTCCAAATGCGAGAGGTCCAGGTCTTGTCACATTTGGGCCTGACCGTGTATTGGACTTCTGCAAGAAAAACAAATTGCAGCTAATCATTAGGGCACATGAATGTGTAATGGACGGTTTTGAACGCTTTGCTCAAGGTCATTTGATTACACTATTTTCCGCGACAAACTATTGTGGCACAGCAAATAATGCTGGTGCATTACTGGTTTTGGGTAGAGACTTAGTTGTAGTTCCTAAGTTGATTCATCCTCTACCACCACCTATTAGATCACCAGAGTCATCCCAGAACATTATTTGGAAGAGACATGGATGCAGGAGCTCAATATACAAAGGCCACCTACGCCCACTCGTGGCCGACCTCAGCCTGCTCATGATCGAAATTCCTTGGCATTTATTTGATGCATGATTATGCCTTTACTGATTTCTGATGGTTTACCATTGTTGTAGTGGCCTATGTAGAATAGTGTATACTTAAAGAGTTATGTGGGCTCTGTGCACTTTCATCAGCATCTCTTTGCCCAAAGAGATCAGAAGAAACTATCTTTTGTTTCGTATATATAAATGTTTGTGTTGATCTTGCTATCAAAATAGTTGTGCATTGGGGGACTTGCTAATTTAGTGTTTGGACTTGCAATGTGGCGGTATGGATTCAATTTCATCTTCGTGTTTATTGCTGCTGTTCCTGAAGGCTTGATATGCGTTGACTTCTAAGTTCCTTCGAGGAGAATTGTACTGCTCAGAATGGCTGATTAGATACTTTAGTTGACTATGGCTTCTCCACATATGATTTGTAAGGCTCCATGAATTCTATGGAGTTTGTACTTTTAGCTAATATTTTTTATACTATGTGCCAATAAAATAGTTATGTTTCTGCTGTAGGGTTGGGATGTCCATTTATTTTTCTTAATTTTTTTTCCTTTTGGCATTTGTATTAATCTGAAGGCTTCAAGTATTCCACGTGATTCGTTTTTTTCTTACGTTTTGACAATAGAGTAGGCTATTACTTCCATCTGTGAGTATTGGAACTTTCTCAAGGACAGAACATTTTAAACTTATCTGACAATTTTTCTAGCAGAGTTGGAAACTTGGAATGCCAATCTTCATTTGCCTTGCAGGGTCTATTACATTTGAAGGAATCTGGAGACTGCAACTAATTTGTATACTTGATTCAGGTTTCTTGCAGCGTGAATTTAATCCTTAGACATAATTTATTAAGCTTAGAGATCAGGACCCACTGTATTTTCTAAATTTCTTTATCCTGCCATAGGGTATTCCTTCAAGGTAAAACATTATGAACTAATATTGGCTTTTACACGCTCCTCGTTGAGATTTATCTTTTCTGTATTCACAGACGAATTTGATATTTGATTGAGTCAAAGAAGTTTGATATGATTCTGGAAGTGAACGGCTCACAAGGATATGTAGGAGATACCTGCTTGTGTGCAAGTTCTAGAAATGTTTAATTTAGTGATCAGTCTATGAG

Ace file of the UniGene sp_v1.1_unigene135

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=3 Tax=rosids RepID=D7TP64_VITVI	-	-	68%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	protein	-	-	83%

Source	InterPros	Term	Type	Identity
Blast2go	Metallophosphoesterase domain	IPR004843	-	83%
Blast2go	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	83%
Blast2go	Kelch-type beta propeller	IPR015915	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPR8

Fln msg: your sequence is longer than subject: 611 - 318

Fln protein: MVEGLPAISVLDTSAGFWVDRNGVVSSPRTNKSHTEFDSSLDLLKRCRHAAASVGNQIYIYGGLRGEILLDDLLGSEDTASRRGTEVNYYTLEQLHKSAFSNRTPTENSAPHVDSPSVPMDNKGLETLEKASAAEAEAVIAHFNAAKAAAAMDMEGEERPKEEKESTHEGIENNVASGSNLASDLDDPVKSDVRLHHRAVVVAKEPVGSLGSLVRQLSLDQFENEGRRMSPWNLDQAHAAKRLLTKQKSPVALHKKVISSLLRPRNWRPPVNRGFFLDSYEVGELCYTAEQIFMHEPTILQLKAPVKIFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPDHVHLIRGNHEAADINALFGFRLECIERMGDRDGIWAWTRFNQLFNWLPLSALIERKIICMHGGIGRSINFLEQIESLQRPISMDAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVLDFCKKNKLQLIIRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGALLVLGRDLVVVPKLIHPLPPPIRSPESSQNIIWKRHGCRSSIYKGHLRPLVADLSLLMIEIPWHLFDA*

Protein Length: 612

Fln nts: CTCGGTATCAACATGCAGCAGTCTTTGTAGACGCAAGGTTGCATGTTTCAGGAGGTGCTCTCAGGGGAGGAAGA_-_ATGGTAGAGGGGCTTCCTGCAATCTCAGTACTTGATACATCTGCTGGATTTTGGGTTGATCGAAATGGAGTTGTTTCATCTCCTCGGACAAATAAATCTCACACAGAATTTGATTCATCTTTGGATCTTCTAAAGCGTTGTCGGCATGCAGCAGCTTCTGTTGGCAATCAAATATATATATATGGTGGATTAAGAGGAGAGATTTTGCTTGATGATCTTCTAGGGTCAGAAGATACAGCAAGCAGAAGGGGCACTGAAGTTAATTATTACACACTTGAACAGCTTCATAAATCAGCCTTTTCAAATAGAACGCCTACGGAGAATAGTGCTCCTCATGTCGACTCTCCTAGTGTGCCCATGGACAATAAAGGGCTTGAGACATTGGAGAAGGCATCTGCTGCTGAGGCTGAAGCAGTGATTGCACATTTTAATGCTGCTAAGGCAGCTGCGGCGATGGATATGGAAGGTGAGGAGAGGCCAAAAGAAGAGAAGGAATCTACTCATGAAGGAATTGAGAATAATGTTGCCTCAGGGTCTAACTTGGCATCTGATTTAGATGATCCTGTTAAATCGGATGTTCGCCTTCATCACAGAGCAGTTGTAGTTGCTAAAGAACCCGTAGGTAGCTTGGGCAGTCTAGTGCGGCAGCTATCTTTGGATCAATTTGAGAATGAGGGCAGGCGAATGAGCCCTTGGAATCTTGACCAGGCACATGCTGCTAAAAGGCTGCTTACAAAACAAAAGTCTCCTGTTGCTTTGCATAAAAAGGTCATTTCTTCTTTGCTGAGGCCTCGTAACTGGAGGCCTCCTGTAAATAGGGGATTCTTCTTGGATTCCTATGAAGTGGGTGAGCTATGTTATACTGCAGAACAAATCTTCATGCATGAGCCAACAATCCTACAATTAAAGGCTCCAGTCAAAATATTTGGTGATCTTCATGGACAATTTGGTGATTTAATGCGATTGTTTGATGAGTATGGATTTCCTTCAACTGCGGGAGATATTACGTATATTGACTACCTCTTTTTGGGAGATTATGTTGATCGTGGTCAGCACAGTTTAGAAACTATTACCTTGCTTCTTGCGCTTAAGATTGAGTATCCTGACCATGTACATTTGATTCGCGGAAATCATGAAGCTGCTGACATCAATGCTCTCTTTGGCTTTCGACTTGAATGCATCGAACGAATGGGAGATAGAGATGGCATATGGGCATGGACACGCTTTAACCAGCTTTTCAATTGGTTACCCTTATCTGCTCTTATAGAAAGAAAGATTATCTGTATGCATGGTGGGATTGGAAGATCTATAAACTTCTTGGAACAGATAGAGAGCCTGCAACGGCCGATAAGCATGGATGCAGGATCAATTGTTCTTATGGATCTTCTGTGGTCCGATCCAACAGAGAATGATAGTGTAGAAGGCTTGCGTCCAAATGCGAGAGGTCCAGGTCTTGTCACATTTGGGCCTGACCGTGTATTGGACTTCTGCAAGAAAAACAAATTGCAGCTAATCATTAGGGCACATGAATGTGTAATGGACGGTTTTGAACGCTTTGCTCAAGGTCATTTGATTACACTATTTTCCGCGACAAACTATTGTGGCACAGCAAATAATGCTGGTGCATTACTGGTTTTGGGTAGAGACTTAGTTGTAGTTCCTAAGTTGATTCATCCTCTACCACCACCTATTAGATCACCAGAGTCATCCCAGAACATTATTTGGAAGAGACATGGATGCAGGAGCTCAATATACAAAGGCCACCTACGCCCACTCGTGGCCGACCTCAGCCTGCTCATGATCGAAATTCCTTGGCATTTATTTGATGCATGA___TTATGCCTTTACTGATTTCTGATGGTTTACCATTGTTGTAGTGGCCTATGTAGAATAGTGTATACTTAAAGAGTTATGTGGGCTCTGTGCACTTTCATCAGCATCTCTTTGCCCAAAGAGATCAGAAGAAACTATCTTTTGTTTCGTATATATAAATGTTTGTGTTGATCTTGCTATCAAAATAGTTGTGCATTGGGGGACTTGCTAATTTAGTGTTTGGACTTGCAATGTGGCGGTATGGATTCAATTTCATCTTCGTGTTTATTGCTGCTGTTCCTGAAGGCTTGATATGCGTTGACTTCTAAGTTCCTTCGAGGAGAATTGTACTGCTCAGAATGGCTGATTAGATACTTTAGTTGACTATGGCTTCTCCACATATGATTTGTAAGGCTCCATGAATTCTATGGAGTTTGTACTTTTAGCTAATATTTTTTATACTATGTGCCAATAAAATAGTTATGTTTCTGCTGTAGGGTTGGGATGTCCATTTATTTTTCTTAATTTTTTTTCCTTTTGGCATTTGTATTAATCTGAAGGCTTCAAGTATTCCACGTGATTCGTTTTTTTCTTACGTTTTGACAATAGAGTAGGCTATTACTTCCATCTGTGAGTATTGGAACTTTCTCAAGGACAGAACATTTTAAACTTATCTGACAATTTTTCTAGCAGAGTTGGAAACTTGGAATGCCAATCTTCATTTGCCTTGCAGGGTCTATTACATTTGAAGGAATCTGGAGACTGCAACTAATTTGTATACTTGATTCAGGTTTCTTGCAGCGTGAATTTAATCCTTAGACATAATTTATTAAGCTTAGAGATCAGGACCCACTGTATTTTCTAAATTTCTTTATCCTGCCATAGGGTATTCCTTCAAGGTAAAACATTATGAACTAATATTGGCTTTTACACGCTCCTCGTTGAGATTTATCTTTTCTGTATTCACAGACGAATTTGATATTTGATTGAGTCAAAGAAGTTTGATATGATTCTGGAAGTGAACGGCTCACAAGGATATGTAGGAGATACCTGCTTGTGTGCAAGTTCTAGAAATGTTTAATTTAGTGATCAGTCTATGAG

Fln Alignment:

sp_v1.1_unigene135___VISSLLRPRNWRPPVNRGFFLDSYEVGELCYTAEQIFMHEPTILQLKAPVKIFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPDHVHLIRGNHEAADINALFGFRLECIERMGDRDGIWAWTRFNQLFNWLPLSALIERKIICMHGGIGRSINFLEQIESLQRPISM-DAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVLDFCKKNKLQLIIRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGALLVLGRDLVVVPKLIHP
C0PPR8_____________VIGRLLEVRGSKP--GKQVQLLEAEVRQLCILSKDIFMKQPNLLELEAPVKICGDVHGQYSDLLRLFEYGGLPPES------NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVR----LWKLFTDCFNCLPVAALIDEKILCMHGGLSPELNSLDQIRNIPRPTDVPDQG--LLCDLLWSDP--SNEIQGWGSNDRGVS-YTFGPDKVSDFLQKLDLDLICRAHQVVEDGYQFFADRQLVTVFSAPNYCGEFDNAGAMMSVDQSLMCSFQILKP

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1373	33		66		0.997452
1469		10		90	0.90298
1939			88	12	1.0
1940		12		84	1.0
1941	12			88	1.0
1942		12	4	84	1.0
1943	88			12	1.0
1945	12	88			1.0
2009	9			90	1.0
2010	9	90			1.0
2207		63	36		1.0
2424		20		80	0.995493
2426		80		20	0.995493
2430			20	80	0.995493
2432			87	12	0.992554
2474		90	10		0.90298
2477			11	88	0.923564
2479		11		88	0.923564
2480	11			88	0.923564
2481		11		88	0.923564
2605	85		14		0.999981
2609			14	85	0.999981
2611		85	14		0.999981
2613		14		85	0.999981
2617		85	14		0.999981
2620			14	85	0.999981
2621			85	14	0.999981
2624		14	85		0.999981
2625			85	14	0.999981

SSRs (tot: 1)

Start position	End position	Sequence	Length
246	257	AT AT AT AT AT AT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain