SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene130

Length: 1998 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene130
CGTCGTGACCTTGGCTGTCACTCAATTTGGCACGCTGCCAACAATGTTGGCCACAATAAACTCTGTAAATTCTCGATTTCGTTTATCGTGAGAAACCATAGGTGAACTGTGATATGCGATCAAGAGAAAGGGAATTGAATTGAAGTTTTTAACGATGTCCAAACATCATATAATCAAGTTTCTCTCCTGCTCTGGTCGTGAATCATAATAAAAGAGTTTGCCAATTTGTAAATGAATAGAGGTCCAAGTTTGCCGTCAAGTAACTGTATAAATTTGTACATTAAACTGTGATCTCGCCATAAATAGGTCCGAGTTGCTCCAACCAGCGTACTCTGCAGGCTTACTGCAGTCTCGAACGAGCTCTATATCATTATCCCCAAAGCGAGAGGTTCGAAGTGGTGACAGTACAGTAGCCCGCTTTTCATACAATTCGAGTCAAAAGATATGTCTGTCCAGCACATGGAAGCTATGCAAGCTCGCGAGCTAAGATGAAGTGGCTGTCTATACACCTAATATCCAACGAAGAGTTGTAAGATTCGTCCTTTCTCTTCAAGCAAATCCGGCTTATCAGCAATGGCCGTGTCAGTAGACGGCGGTAGTAGCAAGAGCCTAATTGCCATAGACCTCTCCAGTTCTGACCTCACACACTCTGCATCCTTGATCAGACAGGCTTGCTTGGAGAGTGGGTTTTTCTATGTGATAAACCATGGCATCAGTAAGGAGCTATTTGAGGAGCTTTTCGATCAATCTCATAACTTTTTCCAGCTTCCATTGGAGGAAAAGATGAAGGTGTTGAAGAACGAGAATTTCAGAGGTTACACCCCCTTCATGGATGAGATGCTCGATCCATCCAAACAAACTAAAGGAGACTGTAAAGAAGGGTATTATATTGGAGTTGAAGTGGCCAAGGATGATCCTCGGGCAACAAAGAGTTTTTTTGGACCAAATGTTTGGCCTTCAGCAGATGTTTTGCCTGGTTGGAAGCAGACTATGGAGAAGTATCATCAAGAAGCATTAAATGTTGGGAGGAGGGTCGCCAGGCTGATAGCTTTGGCCTTGAATCTAGAGGCAGATTTCTTTGACAAACCACAGATTCTTGAGGAACCAATTGCTATATTGCGGCTTCTACATTATGTGGATGAAATATCTAAGCCAGAACTAGGAATATATGGTGCTGGAGCACATTCAGACTATGGTTTGCTCACGTTGCTGGTAACAGATGAAGTATCAGGTCTCCAAATCTGCAAAAACAAGGATGCTGAGCTACAAATTTGGGAAGATGTGCATCCGTTGAGAGGTGCATTCATTGTCAACATTGGGGACATGCTTGAACGATGGACTAATGGCATTTTCAGATCTACTCTGCACCGAGTTTTATTATCTGGCCAGGAGCGTTACTCGGTGGCATATTTCTTGGAACCGGGTCCTGACTGTCTTGTGGAGTGCCTTCCAACTTGTCAATCAGAAAGTAATCCTCCCAAGTATTTTCCTGTCAAATATGGGGATTATCTGGCCCAGCGATACAAGGACACGCACGGTAACTTAAGTTCATCTTACTAGATATGAGCTTCTGGATGACATGATCGGAAGGTGCAGTGCCCATTCTTTCTTAAAGTGAAGCAAGGATAAGCACGGTATACGGTCTGCATTTTCTTTCAAATATATTGTTCATTTCAACATTGAAAATGAATAAAACGCAAAGCACATTGAGAAAGGCAAAACCATGGTTTTGCTGCATCAATTTATAATCATTTATAACCTATTTGAAGAAACATAGTTTGCTCCTTACATATTGAACTTTTTAGAACTGACTTTTTCCGATTTTGTCTAAAAATTGTTCCTGTAGTTTAAGGAACAATCTGTGTTATGTGCATACCCATGGAAATATTGATTTATTGGAAATCTTCATAGGGCATGTCTTTAGTCTATTGCATGGGATGATGCACAAAAACCATTGTAAGAACTTACCAAAATCAAGGTGAATACTTTAAGGTTACC

Ace file of the UniGene sp_v1.1_unigene130

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Hyoscyamine 6-dioxygenase, putative (EC:1.14.11.23)	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	hyoscyamine 6-	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Isopenicillin N synthase	IPR002283	-	0.0	83%
Blast2go	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPL0

Fln msg:

Fln protein: MAVSVDGGSSKSLIAIDLSSSDLTHSASLIRQACLESGFFYVINHGISKELFEELFDQSHNFFQLPLEEKMKVLKNENFRGYTPFMDEMLDPSKQTKGDCKEGYYIGVEVAKDDPRATKSFFGPNVWPSADVLPGWKQTMEKYHQEALNVGRRVARLIALALNLEADFFDKPQILEEPIAILRLLHYVDEISKPELGIYGAGAHSDYGLLTLLVTDEVSGLQICKNKDAELQIWEDVHPLRGAFIVNIGDMLERWTNGIFRSTLHRVLLSGQERYSVAYFLEPGPDCLVECLPTCQSESNPPKYFPVKYGDYLAQRYKDTHGNLSSSY*

Protein Length: 330

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGGCACGCTGCCAACAATGTTGGCCACAATAAACTCTGTAAATTCTCGATTTCGTTTATCGTGAGAAACCATAGGTGAACTGTGATATGCGATCAAGAGAAAGGGAATTGAATTGAAGTTTTTAACGATGTCCAAACATCATATAATCAAGTTTCTCTCCTGCTCTGGTCGTGAATCATAATAAAAGAGTTTGCCAATTTGTAAATGAATAGAGGTCCAAGTTTGCCGTCAAGTAACTGTATAAATTTGTACATTAAACTGTGATCTCGCCATAAATAGGTCCGAGTTGCTCCAACCAGCGTACTCTGCAGGCTTACTGCAGTCTCGAACGAGCTCTATATCATTATCCCCAAAGCGAGAGGTTCGAAGTGGTGACAGTACAGTAGCCCGCTTTTCATACAATTCGAGTCAAAAGATATGTCTGTCCAGCACATGGAAGCTATGCAAGCTCGCGAGCTAAGATGAAGTGGCTGTCTATACACCTAATATCCAACGAAGAGTTGTAAGATTCGTCCTTTCTCTTCAAGCAAATCCGGCTTATCAGCA_-_ATGGCCGTGTCAGTAGACGGCGGTAGTAGCAAGAGCCTAATTGCCATAGACCTCTCCAGTTCTGACCTCACACACTCTGCATCCTTGATCAGACAGGCTTGCTTGGAGAGTGGGTTTTTCTATGTGATAAACCATGGCATCAGTAAGGAGCTATTTGAGGAGCTTTTCGATCAATCTCATAACTTTTTCCAGCTTCCATTGGAGGAAAAGATGAAGGTGTTGAAGAACGAGAATTTCAGAGGTTACACCCCCTTCATGGATGAGATGCTCGATCCATCCAAACAAACTAAAGGAGACTGTAAAGAAGGGTATTATATTGGAGTTGAAGTGGCCAAGGATGATCCTCGGGCAACAAAGAGTTTTTTTGGACCAAATGTTTGGCCTTCAGCAGATGTTTTGCCTGGTTGGAAGCAGACTATGGAGAAGTATCATCAAGAAGCATTAAATGTTGGGAGGAGGGTCGCCAGGCTGATAGCTTTGGCCTTGAATCTAGAGGCAGATTTCTTTGACAAACCACAGATTCTTGAGGAACCAATTGCTATATTGCGGCTTCTACATTATGTGGATGAAATATCTAAGCCAGAACTAGGAATATATGGTGCTGGAGCACATTCAGACTATGGTTTGCTCACGTTGCTGGTAACAGATGAAGTATCAGGTCTCCAAATCTGCAAAAACAAGGATGCTGAGCTACAAATTTGGGAAGATGTGCATCCGTTGAGAGGTGCATTCATTGTCAACATTGGGGACATGCTTGAACGATGGACTAATGGCATTTTCAGATCTACTCTGCACCGAGTTTTATTATCTGGCCAGGAGCGTTACTCGGTGGCATATTTCTTGGAACCGGGTCCTGACTGTCTTGTGGAGTGCCTTCCAACTTGTCAATCAGAAAGTAATCCTCCCAAGTATTTTCCTGTCAAATATGGGGATTATCTGGCCCAGCGATACAAGGACACGCACGGTAACTTAAGTTCATCTTACTAG___ATATGAGCTTCTGGATGACATGATCGGAAGGTGCAGTGCCCATTCTTTCTTAAAGTGAAGCAAGGATAAGCACGGTATACGGTCTGCATTTTCTTTCAAATATATTGTTCATTTCAACATTGAAAATGAATAAAACGCAAAGCACATTGAGAAAGGCAAAACCATGGTTTTGCTGCATCAATTTATAATCATTTATAACCTATTTGAAGAAACATAGTTTGCTCCTTACATATTGAACTTTTTAGAACTGACTTTTTCCGATTTTGTCTAAAAATTGTTCCTGTAGTTTAAGGAACAATCTGTGTTATGTGCATACCCATGGAAATATTGATTTATTGGAAATCTTCATAGGGCATGTCTTTAGTCTATTGCATGGGATGATGCACAAAAACCATTGTAAGAACTTACCAAAATCAAGGTGAATACTTTAAGGTTACC

Fln Alignment:

sp_v1.1_unigene130___MAVSVDGGXXXXXXXXXXXXXXXTHSASLIRQACLESGFFYVINHGISKELFEELFDQSHNFFQLPLEEKMKVLKNENFRGYTPFMDEMLDPSKQTKGDCKEGYYIGVEVAKDDPRATKSFFGPNVWPSADVLPGWKQTMEKYHQEALNVGRRVARLIALALNLEADFFDKPQILEEPIAILRLLHYVDEISKPELGIYGAGAHSDYGLLTLLVTDEVSGLQICKNKDAELQIWEDVHPLRGAFIVNIGDMLERWTNGIFRSTLHRVLLSGQERYSVAYFLEPGPDCLVECLPTCQSESNPPKYFPVKYGDYLAQRYKDTHGNLSSSY
C0PPL0_____________MAVSVDGGSSKNLIAIDLSSSDLTHSASLIKQACLDSGFFYVINHGIRKELFEELFDQSRNFFQLPLEDKMKVLRNENFRGYTPFMDEMLDPSKQTKGDCKEGYYIGVEVAKDDPRATKRFFGPNVWPSADILPGWKQTMEKYHQEALSVGRRVARLIALALNLEADFFDKPEILEEPIAVLRLLHYVDEISKPELGIYGAGAHSDFGLLTLLVTDEVSGLQICKNKDAELQIWEDVHPLRGAFIVNIGDMLERWTNGIFRSTLHRVLLFGQERYSVAYFFEPGPDCLVECLPTCHSESNPPKHFPVKYGDYLAQRYKDTHSDLNSSY

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
991	66		33		1.0
1033			88	11	0.923564
1102	10		90		0.90298
1184	90		10		0.90298
1186		10		90	0.90298
1187		90	10		0.90298
1188	90			10	0.90298
1192		10		90	0.90298
1193	90			10	0.90298
1198		10		90	0.90298
1206			90	10	0.90298
1207		10		90	0.90298
1208	10			90	0.90298
1272			14	85	0.993533
1273			14	85	0.993533
1336		20		80	0.995493
1348	85		14		0.993533
1438		85		14	0.993533
1601		85		14	0.993533
1603	85		14		0.993533
1604		14		85	0.993533
1605	14			85	0.993533
1606		85	14		0.993533
1608			14	85	0.993533
1609	14			85	0.993533
1610		85	14		0.993533
1612			14	85	0.993533
1614	85	14			0.993533
1617		14		85	0.993533
1618		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain