SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene116

Length: 3105 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene116
AGAAATCAGGGGGAAGTGACCGTTGATTCGAGATTTGAATTGTCCGGAGGGGAGGAAGATAATGCAGCGCCGCGATGCCTACGCGTCACCGACTGAATATTATTTAAATTGTGTCTGCTACCCGCCGGCGACTCAGCAGGTTATGTATGGATGAAGAATAAGTATGTATTTATATATTTGTTTCAGCTTCGAGATGCGTGAAGGTTACGGAGTTTCGAGCAAACCCGCACGAGTTTCCTCTCCACCTTGGTACTGATGGATCGTGTCTGGATGTATAGTGATGCATCTTTTACCGTCCGATTAAAAAGATGCGAGGAGTTTATGGTATTCAAACATTAGGTTCATTGTTCAGGGTTTTATGCTTCTTTTTGGGTGGATTAGCGGGTTTCGGTGCATTTGGCGTTTTGTAAATGGAAAAGATTCCGTGGGGAAGACGGACAGGCAGCTCTGCAGTGCAGGATTGAAAGCTCGAGGGTAAATAGGATGTGATAAGGCTTTCGACTGTTTTCATCCTTGTTTCAAACTCACAGCTACTAGCCGTTAGATTTTTCTCCACTTTGTAGCCGTTTGATTTCAATGCCTTTAATGGATTCTGCTCATTGGAACTTGGTGCTTTAATCGTTGTAGTGATTGAATAATTGCGCTTTGGAATCTGTGAAGAGCTTTTTCGGAGCAAAAGAAGTTCCGTTTAGGTTTTGCCTGAACAGAAGCGCGAAGTTCTTGCATATTGCATTGAAGTTTGTCGAGAAAGCGATTTTTGTCAAGAGTAGAGCGATTCCGCGAAGATATTGCGCTGGTGTTTCCATTTTCCGGAGTATATCAGATCGCAGAGTGAGACGAGGAAAAAAATGCTTAACGTTCTTGAACGGGCCCGATCATTAAGCGCAAAAGTTTTCTGGTTCTCCGGTTTCTAACGGCTCTGGAATTCGAAAGGGAGAAAGAAAACATGGTGGAAGAAGTGTTTGAAGGGAACAGCGCGACTAAATCCACAGAAGAATGGTTGAAACAGGCGGAAGATCTGGTTCCATTGGCTGTAGCTAAAATTGGAGAAGTTAAAGCTTTTATTGGAAGATGGAAGAATATCTCCAACAAAGTGGAGCAGCTTCCTTCAACGCTCTCGGACTTGGCAAGCCATCCCTGTTTCACGAAAAATTCCCTATGCAAGGAGCAGTTGCAGGCTGTGGTAGTTACTCTCCAGGAAACGATAAAGCTAGCCACTAATTGTGTGGACCAGAACTATGGCGGAAAACTGCAGATGCAAAGCAACCTGGATGCGTTGGCTGCCAAAATCGACCTGAATCTTCATGACTGCGGTCTCTTGGTGAAAACCGGCGTATTAGGCGAAGCAACCATTCCTTTAACGCTTACCAGGTCTGCATCCGGAGCAAAGCGCGAAGCAATACGATGGAACATAAGGGAATTGCTCGCTCGCCTCCAAATCGGCCACATGGAATCCAAGCACAAAGCCCTGGATAGCCTCATAGAAATGATTAACGAAGATGAGAAAAACATTTTGGCCGCGGCCGGTAGAAGCAGTGTCTCGGCTCTGGTACAGCTATTGAGTGCTAGTTCACCGCGGATTCGGGAAAAGGCGGCCACGGTCATATGCTGCCTCGCAGAGGCTGATAATTGCGATCAGCTCTTGGTATCGGAAGGCGCTCTTCCGCCTCTGGTGAGGTTGCTGGAATCCGGAAGCCCTTTGGCAAAAGAAAAGGCCACGCTGGCTCTTCAACGTCTGACATCTGGCGCGGAGACAGCTCGATCCGTGGTTGGTCACGGCGGGATTCCTGCGCTGATTGAGATATGCCAGGTCGGTTCGCCTGTAACGCAGACAGCAGCGGCGGGGGCTTTGAGAAATCTATCGGCGGTGCCAGAAGTTAGACAGGGTTTGGCAGAAGAAGGCATCATTTCCATCGCGATAAATTTGCTCGATTCTGGCAGCGCTGCCCTGTCCAAAGAATACGCTTCTGACTGTTTACAACACTTGACTTCGGGCCATGAAAGCCTGCGTCGGACGGTGGTATCCGAGGGCGGAATTCAACACCTGTTGAAGTACTTGGACTGCTCGTTGCCCCCGGAGTCCGCCATCGGAGCTTTACGGAACCTGACGGCATCCGTCCCCGCCGACGGTTTGATTTCCGTCGGGTTACTTCCGCGTCTAGTGAATGTGCTGAAAAGCGGTTCACTGGGGGCGCAGCAGGCCGCTGCGTCCACCATTTGCCGGATTTCGACATCGACTGATCTGAGAAAAGAAGTCGGCGAGGCCGGCTGCATCCCTTTTCTGGTCAAGATGTTGGAGGCCAAAAGCAGCACCGCACAGGAGATGGCTGCACAGGCGTTGTCGAGCCTGCTACTCGTGCCACACAATTGCCGTGAAATTCGCAAAGAGGAGAAAAGCATACCCAATTTGGTGCAGCTGTTAGATCCCACCAACCAAACGACAGCCAAAAAGTACGCCATTTCGGCTCTCGCATCGCTCTCCACCAGCAAAAAGTGCAAGAAATTGATGATTTCATGCGGAGCCCGTGCTCACCTCAAGAAACTCTCCGAGCTGGAAGTTTTTGGGGCCAAGAAACTGCTCGAACGCCTGGACAGGGGCAAATTTCGAAGTTTTCTTTTTGGTAGAAAGTAAGTACAGAGTAAACCAAAAATCTTTGATAAGTTGCATTGCACTTAACTTTTTGGGCGTCTGTACTGTACATCATGGGTTAAAGAAAGCAAATTATTCAAGCAGCAGCAACCTTAAATCGGATGAAAATTGTGCATTTTAGCTTATGGGTAGGTATGTTGTGTAGGCCATCCATCATGTTGTTTCTGCAGCATGTTTTGCATTTAAAAATTTCGATAGACAAAGGGTATGGTTGCTGCTGCTGCTGCTATCGTCTTTTATTTTGCCTGTTCTTTTGTTTTGTACACTTCTTGTGCAGCAAGAAGAGCCAAAAGCTGCACGGCTTGTGCAGGAATATACAAATTCAATAGTTGGAAACGCTTCTCAGCTGCTTGTTAGATTCTCTAGCCCTAAACTTGCTTTCTGCAAAAGCTCTGAACTTACTTTTCTGTAAACTCCGTGTATATATCATCCGCGCTTCACATAAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene116

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RDK5_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	armadillo beta-catenin repeat family protein	-	-	78%

Source	InterPros	Term	Type	Identity
Blast2go	Armadillo	IPR000225	-	78%
Blast2go	Armadillo-like helical	IPR011989	-	78%
Blast2go	Armadillo-type fold	IPR016024	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADE7

Fln msg: your sequence is longer than subject: 562 - 386

Fln protein: MVEEVFEGNSATKSTEEWLKQAEDLVPLAVAKIGEVKAFIGRWKNISNKVEQLPSTLSDLASHPCFTKNSLCKEQLQAVVVTLQETIKLATNCVDQNYGGKLQMQSNLDALAAKIDLNLHDCGLLVKTGVLGEATIPLTLTRSASGAKREAIRWNIRELLARLQIGHMESKHKALDSLIEMINEDEKNILAAAGRSSVSALVQLLSASSPRIREKAATVICCLAEADNCDQLLVSEGALPPLVRLLESGSPLAKEKATLALQRLTSGAETARSVVGHGGIPALIEICQVGSPVTQTAAAGALRNLSAVPEVRQGLAEEGIISIAINLLDSGSAALSKEYASDCLQHLTSGHESLRRTVVSEGGIQHLLKYLDCSLPPESAIGALRNLTASVPADGLISVGLLPRLVNVLKSGSLGAQQAAASTICRISTSTDLRKEVGEAGCIPFLVKMLEAKSSTAQEMAAQALSSLLLVPHNCREIRKEEKSIPNLVQLLDPTNQTTAKKYAISALASLSTSKKCKKLMISCGARAHLKKLSELEVFGAKKLLERLDRGKFRSFLFGRK*

Protein Length: 563

Fln nts: AGAAATCAGGGGGAAGTGACCGTTGATTCGAGATTTGAATTGTCCGGAGGGGAGGAAGATAATGCAGCGCCGCGATGCCTACGCGTCACCGACTGAATATTATTTAAATTGTGTCTGCTACCCGCCGGCGACTCAGCAGGTTATGTATGGATGAAGAATAAGTATGTATTTATATATTTGTTTCAGCTTCGAGATGCGTGAAGGTTACGGAGTTTCGAGCAAACCCGCACGAGTTTCCTCTCCACCTTGGTACTGATGGATCGTGTCTGGATGTATAGTGATGCATCTTTTACCGTCCGATTAAAAAGATGCGAGGAGTTTATGGTATTCAAACATTAGGTTCATTGTTCAGGGTTTTATGCTTCTTTTTGGGTGGATTAGCGGGTTTCGGTGCATTTGGCGTTTTGTAAATGGAAAAGATTCCGTGGGGAAGACGGACAGGCAGCTCTGCAGTGCAGGATTGAAAGCTCGAGGGTAAATAGGATGTGATAAGGCTTTCGACTGTTTTCATCCTTGTTTCAAACTCACAGCTACTAGCCGTTAGATTTTTCTCCACTTTGTAGCCGTTTGATTTCAATGCCTTTAATGGATTCTGCTCATTGGAACTTGGTGCTTTAATCGTTGTAGTGATTGAATAATTGCGCTTTGGAATCTGTGAAGAGCTTTTTCGGAGCAAAAGAAGTTCCGTTTAGGTTTTGCCTGAACAGAAGCGCGAAGTTCTTGCATATTGCATTGAAGTTTGTCGAGAAAGCGATTTTTGTCAAGAGTAGAGCGATTCCGCGAAGATATTGCGCTGGTGTTTCCATTTTCCGGAGTATATCAGATCGCAGAGTGAGACGAGGAAAAAAATGCTTAACGTTCTTGAACGGGCCCGATCATTAAGCGCAAAAGTTTTCTGGTTCTCCGGTTTCTAACGGCTCTGGAATTCGAAAGGGAGAAAGAAAAC_-_ATGGTGGAAGAAGTGTTTGAAGGGAACAGCGCGACTAAATCCACAGAAGAATGGTTGAAACAGGCGGAAGATCTGGTTCCATTGGCTGTAGCTAAAATTGGAGAAGTTAAAGCTTTTATTGGAAGATGGAAGAATATCTCCAACAAAGTGGAGCAGCTTCCTTCAACGCTCTCGGACTTGGCAAGCCATCCCTGTTTCACGAAAAATTCCCTATGCAAGGAGCAGTTGCAGGCTGTGGTAGTTACTCTCCAGGAAACGATAAAGCTAGCCACTAATTGTGTGGACCAGAACTATGGCGGAAAACTGCAGATGCAAAGCAACCTGGATGCGTTGGCTGCCAAAATCGACCTGAATCTTCATGACTGCGGTCTCTTGGTGAAAACCGGCGTATTAGGCGAAGCAACCATTCCTTTAACGCTTACCAGGTCTGCATCCGGAGCAAAGCGCGAAGCAATACGATGGAACATAAGGGAATTGCTCGCTCGCCTCCAAATCGGCCACATGGAATCCAAGCACAAAGCCCTGGATAGCCTCATAGAAATGATTAACGAAGATGAGAAAAACATTTTGGCCGCGGCCGGTAGAAGCAGTGTCTCGGCTCTGGTACAGCTATTGAGTGCTAGTTCACCGCGGATTCGGGAAAAGGCGGCCACGGTCATATGCTGCCTCGCAGAGGCTGATAATTGCGATCAGCTCTTGGTATCGGAAGGCGCTCTTCCGCCTCTGGTGAGGTTGCTGGAATCCGGAAGCCCTTTGGCAAAAGAAAAGGCCACGCTGGCTCTTCAACGTCTGACATCTGGCGCGGAGACAGCTCGATCCGTGGTTGGTCACGGCGGGATTCCTGCGCTGATTGAGATATGCCAGGTCGGTTCGCCTGTAACGCAGACAGCAGCGGCGGGGGCTTTGAGAAATCTATCGGCGGTGCCAGAAGTTAGACAGGGTTTGGCAGAAGAAGGCATCATTTCCATCGCGATAAATTTGCTCGATTCTGGCAGCGCTGCCCTGTCCAAAGAATACGCTTCTGACTGTTTACAACACTTGACTTCGGGCCATGAAAGCCTGCGTCGGACGGTGGTATCCGAGGGCGGAATTCAACACCTGTTGAAGTACTTGGACTGCTCGTTGCCCCCGGAGTCCGCCATCGGAGCTTTACGGAACCTGACGGCATCCGTCCCCGCCGACGGTTTGATTTCCGTCGGGTTACTTCCGCGTCTAGTGAATGTGCTGAAAAGCGGTTCACTGGGGGCGCAGCAGGCCGCTGCGTCCACCATTTGCCGGATTTCGACATCGACTGATCTGAGAAAAGAAGTCGGCGAGGCCGGCTGCATCCCTTTTCTGGTCAAGATGTTGGAGGCCAAAAGCAGCACCGCACAGGAGATGGCTGCACAGGCGTTGTCGAGCCTGCTACTCGTGCCACACAATTGCCGTGAAATTCGCAAAGAGGAGAAAAGCATACCCAATTTGGTGCAGCTGTTAGATCCCACCAACCAAACGACAGCCAAAAAGTACGCCATTTCGGCTCTCGCATCGCTCTCCACCAGCAAAAAGTGCAAGAAATTGATGATTTCATGCGGAGCCCGTGCTCACCTCAAGAAACTCTCCGAGCTGGAAGTTTTTGGGGCCAAGAAACTGCTCGAACGCCTGGACAGGGGCAAATTTCGAAGTTTTCTTTTTGGTAGAAAGTAA___GTACAGAGTAAACCAAAAATCTTTGATAAGTTGCATTGCACTTAACTTTTTGGGCGTCTGTACTGTACATCATGGGTTAAAGAAAGCAAATTATTCAAGCAGCAGCAACCTTAAATCGGATGAAAATTGTGCATTTTAGCTTATGGGTAGGTATGTTGTGTAGGCCATCCATCATGTTGTTTCTGCAGCATGTTTTGCATTTAAAAATTTCGATAGACAAAGGGTATGGTTGCTGCTGCTGCTGCTATCGTCTTTTATTTTGCCTGTTCTTTTGTTTTGTACACTTCTTGTGCAGCAAGAAGAGCCAAAAGCTGCACGGCTTGTGCAGGAATATACAAATTCAATAGTTGGAAACGCTTCTCAGCTGCTTGTTAGATTCTCTAGCCCTAAACTTGCTTTCTGCAAAAGCTCTGAACTTACTTTTCTGTAAACTCCGTGTATATATCATCCGCGCTTCACATAAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene116___LLARLQIGHMESKHKALDSLIEMINEDEKNILAAAGRXXXXXXXXXXXXXXPRIREKAATVICCLAEADNCDQLLVSEGALPPLVRLLESGSPLAKEKATLALQRLTSGAETARSVVGHGGIPALIEI---CQVGSPVTQTAAAGALRNLSAVPEVRQGLA-EEGIISIAINLLDSGSAALSKEYASDCLQHLTSGH-ESLRRTVVSEGGIQHLLK
D5ADE7_____________LVSMLKSANLEAKEAAVLALLNLAVGNERNKVRIVKAGAIPTLVELLQSENANLRESVVAAILTLSASAINKPIIGVSGVIPLLVEMLTSGSIQGKVDAVMALYNLSTYTDNLLPILAAGAVPPLIWLLKDCKKTSKFSEKMTA-LLESLLALEEGRTAVVKEEGGILALVEAVEDGSPQ-SREHAVGALLNLCQANIGEHRQAILKEGVIPGLLE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
2049	85			14	0.993533
2215	14		85		0.993533
2574			42	57	1.0
2672		20		80	0.999996
2728	36	63			1.0
2746			73	26	1.0
2852	21	78			1.0
2885	21		78		1.0
2897	12			87	0.992554
2899	12		12	75	0.975346
2930		27		72	1.0
2939	70			30	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2863	2878	TGC TGC TGC TGC TGC T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain