SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene105

Length: 2129 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene105
ATGGGGATATTATTTCTTGTGTAGGCTAGCGCATGATGTACAAACTCGTGACATAAAATTCTGGAACCCTCACAAAATCTGAGGCCCAGATTACATCATCGTCTACTGCATGTTTGTGTTTCTGTTTCAACTTTGTCTTTGCCTTCTCGTGCTGATGGCGTTCAGGAGATGAGAAAGCACGGGAAAGCTGATGGCCCTCTCTATGGCTATGGCTTCCTCTGCAACGCTGAAGCCCAATTTCCTCCAGCTCCGCACCACCAGCAAAACATGCTACCGAATGGCGAGCAAGAGGTTCACGGTTCGATTCTCAACGGAGACGCAGGAGAAGGAAACAAAGAAAAGCGAGGAAGACCCGGCCGAGAAACGGTCGCTCGCGGTTGTCACCGGAGAATTCTTTCTCGGCATCGCTGCGCGGTTCTTAAAATATCGAGTTGCACGGGAAGACCAACGAAGACCCTTAGAAGATGATTGGAAAGATAGGTTTTCCAGGGTCTTCTCTCCGAAAAATATCAAGGACGATGAAGATATAGCTTCGGTTACCAAGGACGAAATCGATCCTTCGGTATTATGGGAACAGAGGAGAAAGGACGTGGATGCCGAGAGAGAAAGGCGCGTCATCACCAGCCCAGGTTTCAGCTTCTCGGCAGCCGGCTTGTTGTTCCCTTATCATCTTGGCGTCGCACAGTGTCTTATCGAGAGAGGCTATATCACCGAGAACACACCATTGTCTGGTTCATCTGCTGGCGCTATTGTCTGTGCTGTAATTGCATCTGGAGAAAGCATGAAAGAGGCTCTCAGGGCAACCAAGGTGCTTGCGGAAGATTGCAGATCGAAAGGGACTGCCTTTAGACTTGGGGCAGTCCTTCGGGGTGTCCTTGAAAGGTTCCTGCCCGATGACGTGCACATCAAAGCAAGTGGCAGAATTCGAGTTGCTATAACGCAAGTGTTCAGATCACCGAGAGCCTTACTTGTAGACCAGTTTGACTCTAAGGAGGATTTGATTAATGCAGTTTTCACTTCTTCTTTTATACCAGGATATCTTGCACCAAGACCTGTCACAATATTCAGAAATCGTATCTGCATAGATGGAGGTCTGACACTTTTCATGCCACCAACTTGTGCTGACAATACGATCAGGGTTTGTGCTTTTTCCCTTAGCCGTTTGGGATTGCAAGGCATTGGAATCAGCCCCGATTGCAATCCTGAGAATAGAGCATCGGCAAGGCAGCTTTTGAATTGGGCATTGGAACCAGCTGATGATGATATTCTGGATGAACTTTTTGATGTGGGATACCGTGATGCAAGTGTTTGGACTGAGCAAAATCCTGTTGAAGATATAGTGAAACCAAATATGGTGGTTGAAGTACTTTAACATAACAGCTTGCTGGATACAGATTGACGTCAAGCATCAGTACATGGATATGAATGTAATGATTTCCTCTAATGTGCTTTTGGCGTCCCTCATGTTTCCAAGAGGTTGCTTCTAATAACTTTGCTTATTTCATTCAAGGCCTCTAACATTACAACTTGCAGCATTGCACCTTGGATATCAAGTTGGACAGGCAAAAGAAATAAGAGATTTAAAATCAAGTGATATTTGGAAAGCCAAAATTGTAAGATTCCAGAAAGGTGTAAACCTGGAATTAAAACAAATGATTTTCGGGTAGGATTTATGCATCTTGACCAAGAGTCATACACGACACACAACCTAATAAGCCATTACAATGATGCCTTGTTTGTACAGAAGCTTGATAAGTGTAGAGTAATAACACTGTCAATATGTATAATATTCAAGATAGCGAAATTATTTTACAACGAGGATGTCTGGAGGCTTGTATTTCTAGAATGCATTGATTTTGGTTTCAATTATTCAAGGAGCTAGGTCAAACTGAGGTGGTTGAACTAATTGAAACTGAAATCTTCCTCATGTCAACGCTCACTTTTATGAAGCATTATTTACAGATTTCATTTAATTTCTTTTGAAATCTCATGGTGGTATGAATTTTATTTCAGTTCAATAAGTTGGGGGAAAGACCTTTCATGCTCGCTCAGCAGGTGGCAATCTTTAATTCCTTTTTTGTTCTTTCTAGATGGCAATCTTTAGAAAGTCATTCATTCTATGTACAACC

Ace file of the UniGene sp_v1.1_unigene105

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	patatin-related	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	conserved hypothetical protein [Ricinus communis]	-	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0Y7

Fln msg: your sequence is longer than subject: 394 - 219

Fln protein: MALSMAMASSATLKPNFLQLRTTSKTCYRMASKRFTVRFSTETQEKETKKSEEDPAEKRSLAVVTGEFFLGIAARFLKYRVAREDQRRPLEDDWKDRFSRVFSPKNIKDDEDIASVTKDEIDPSVLWEQRRKDVDAERERRVITSPGFSFSAAGLLFPYHLGVAQCLIERGYITENTPLSGSSAGAIVCAVIASGESMKEALRATKVLAEDCRSKGTAFRLGAVLRGVLERFLPDDVHIKASGRIRVAITQVFRSPRALLVDQFDSKEDLINAVFTSSFIPGYLAPRPVTIFRNRICIDGGLTLFMPPTCADNTIRVCAFSLSRLGLQGIGISPDCNPENRASARQLLNWALEPADDDILDELFDVGYRDASVWTEQNPVEDIVKPNMVVEVL*

Protein Length: 395

Fln nts: ATGGGGATATTATTTCTTGTGTAGGCTAGCGCATGATGTACAAACTCGTGACATAAAATTCTGGAACCCTCACAAAATCTGAGGCCCAGATTACATCATCGTCTACTGCATGTTTGTGTTTCTGTTTCAACTTTGTCTTTGCCTTCTCGTGCTGATGGCGTTCAGGAGATGAGAAAGCACGGGAAAGCTG_-_ATGGCCCTCTCTATGGCTATGGCTTCCTCTGCAACGCTGAAGCCCAATTTCCTCCAGCTCCGCACCACCAGCAAAACATGCTACCGAATGGCGAGCAAGAGGTTCACGGTTCGATTCTCAACGGAGACGCAGGAGAAGGAAACAAAGAAAAGCGAGGAAGACCCGGCCGAGAAACGGTCGCTCGCGGTTGTCACCGGAGAATTCTTTCTCGGCATCGCTGCGCGGTTCTTAAAATATCGAGTTGCACGGGAAGACCAACGAAGACCCTTAGAAGATGATTGGAAAGATAGGTTTTCCAGGGTCTTCTCTCCGAAAAATATCAAGGACGATGAAGATATAGCTTCGGTTACCAAGGACGAAATCGATCCTTCGGTATTATGGGAACAGAGGAGAAAGGACGTGGATGCCGAGAGAGAAAGGCGCGTCATCACCAGCCCAGGTTTCAGCTTCTCGGCAGCCGGCTTGTTGTTCCCTTATCATCTTGGCGTCGCACAGTGTCTTATCGAGAGAGGCTATATCACCGAGAACACACCATTGTCTGGTTCATCTGCTGGCGCTATTGTCTGTGCTGTAATTGCATCTGGAGAAAGCATGAAAGAGGCTCTCAGGGCAACCAAGGTGCTTGCGGAAGATTGCAGATCGAAAGGGACTGCCTTTAGACTTGGGGCAGTCCTTCGGGGTGTCCTTGAAAGGTTCCTGCCCGATGACGTGCACATCAAAGCAAGTGGCAGAATTCGAGTTGCTATAACGCAAGTGTTCAGATCACCGAGAGCCTTACTTGTAGACCAGTTTGACTCTAAGGAGGATTTGATTAATGCAGTTTTCACTTCTTCTTTTATACCAGGATATCTTGCACCAAGACCTGTCACAATATTCAGAAATCGTATCTGCATAGATGGAGGTCTGACACTTTTCATGCCACCAACTTGTGCTGACAATACGATCAGGGTTTGTGCTTTTTCCCTTAGCCGTTTGGGATTGCAAGGCATTGGAATCAGCCCCGATTGCAATCCTGAGAATAGAGCATCGGCAAGGCAGCTTTTGAATTGGGCATTGGAACCAGCTGATGATGATATTCTGGATGAACTTTTTGATGTGGGATACCGTGATGCAAGTGTTTGGACTGAGCAAAATCCTGTTGAAGATATAGTGAAACCAAATATGGTGGTTGAAGTACTTTAA___CATAACAGCTTGCTGGATACAGATTGACGTCAAGCATCAGTACATGGATATGAATGTAATGATTTCCTCTAATGTGCTTTTGGCGTCCCTCATGTTTCCAAGAGGTTGCTTCTAATAACTTTGCTTATTTCATTCAAGGCCTCTAACATTACAACTTGCAGCATTGCACCTTGGATATCAAGTTGGACAGGCAAAAGAAATAAGAGATTTAAAATCAAGTGATATTTGGAAAGCCAAAATTGTAAGATTCCAGAAAGGTGTAAACCTGGAATTAAAACAAATGATTTTCGGGTAGGATTTATGCATCTTGACCAAGAGTCATACACGACACACAACCTAATAAGCCATTACAATGATGCCTTGTTTGTACAGAAGCTTGATAAGTGTAGAGTAATAACACTGTCAATATGTATAATATTCAAGATAGCGAAATTATTTTACAACGAGGATGTCTGGAGGCTTGTATTTCTAGAATGCATTGATTTTGGTTTCAATTATTCAAGGAGCTAGGTCAAACTGAGGTGGTTGAACTAATTGAAACTGAAATCTTCCTCATGTCAACGCTCACTTTTATGAAGCATTATTTACAGATTTCATTTAATTTCTTTTGAAATCTCATGGTGGTATGAATTTTATTTCAGTTCAATAAGTTGGGGGAAAGACCTTTCATGCTCGCTCAGCAGGTGGCAATCTTTAATTCCTTTTTTGTTCTTTCTAGATGGCAATCTTTAGAAAGTCATTCATTCTATGTACAACC

Fln Alignment:

sp_v1.1_unigene105___PNFLQLRTTSKTCYRMASKRFTVRFXXXXXXXXXXXXXXDPAEKRSLAVVTGEFFLGIAARFLKYRVAREDQRRPLEDDWKDRFSRVFSPKNIKDDEDIASVTKDEIDPSVLWEQRRKDVDAERERRVITSPGFSFSAAGLLFPYHLGVAQCLIERGYIT
A9P0Y7_____________PNFLRLRTTSKTCYRMASKRFTVRFSTETQEKETKKSEDEPAEKRSLAVATGEFFLGIAARLLKYRVLRDDERRTFEDDRKDRFSRVFSPKNNKDDEDIASVTKDEIDPSVLWEQRRKDVDAERERRTITSPGFSFSAAGLLFPYHLGVAQCLIEKGYLT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1483	21		78		1.0
1619		44		55	1.0
1936		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain