SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene102

Length: 1010 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene102

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LEA_2 domain containing protein	-	-	2.0e-08	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	protein	-	-	1.37335e-28	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	1.37335e-28	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Late embryogenesis abundant protein, LEA-14	IPR004864	-	1.37335e-28	60%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
607	85		14		0.993533
660		62		37	1.0
798	36	63			1.0
852	11	88			0.923564
855		88	11		0.923564
915		40	60		1.0
1008			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
993	1010	TA TA TA TA TA TA TA TA TA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain