SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene98

Length: 2337 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene98
AGTGTCAATTTTACCTGTGAATTCATTCTCTTTCCTTCTCCGCATCGCTCTTCCCTAGTCATTTCCATGCAAAACTCTCCAGCTTCCCCCTTCTTCTCTTTATAAAGCCCGCCAGAACCTGCACGGGGACTTCATTCCATCGTCCCTCTCCGGATTTGTATTGTTCGCAACAATCTAATCCAATTTCCCAGAGCTCTTCACGGCTTTTGAGGTTTTCTGGTCTGTCTTGCATTTGAGAATCATCGTTCTAGAGACGTGTATCCACTGAACCAAGAAAATTAGAATTCCCCATTTCCCAACCTGCGATTTCAAGCTCGAAAAAGCCATGGATGCCAACGACCATTCGCATCACTTTTCTCAGGCTGAATCTGGTGCCTGGTGGCTGCTAGCCCTGCCTGTTGCCATTAACAACAAGGTTCTTACTATATTTACCCCTGAAGCATTTTGTAATACATGGATGCTTTTAGTTTTGCTTATAGCCATGGCGTATGTTCTACTCTCTTGGCTTTCACCCGGAGGTCCTGCTTGGGGCGGTTCCCTGAAACGGAAACCCACAATCCCGGGACCCAGGGGATTACCGATATTGGGAAACCTCACTGTCATGTGCAGCCTCGCACACCAGCGCCTTGCTTACCTGGCACAAGCCTGCAATGCTCAGAAGCTTATGGCCTTTAGTATGGGTTTCACCCGCGCTGTCATATGCAGCCAGCCTGAAGTCGCCAAGGCGATTCTTAACAGCTCGGCCTTTGCAGATAGGCCCATTAAGGAATCCGCTTATCAACTGATGTTTGATAGAGCAATTGGGTTTGCTCCATACAGTGAGTACTGGAAAAATCTCAGGCGAATTGCTGCTCTACACCTCTTCTCTGCACGAAGAATCTCTGCCTTCGAATCCCACAGACAGGCCTTGACGAACTCCATGTTGGAAACCATTGAGCTGTTGGCGAAGTCACAGCCCAATTCTTCTGTGAAAATCCGTGAGATTTTGCAGAAGACTTCGTTGAATAACATCATGGGGTCAGTATTTGGGAGGAGTTACAGCTTTGGCTCTGGAGATTCTGAGTCTGAAGAGCTGGCTTCAATGGTGAAAGAGGGATATGACCTCTTGGGTATATTCAATTGGGCAGACCACCTTCCTTTTATAGGATTTCTTGATTTACAGGGGATCAGGAGGAGGTGTTCTGACTTGGTTCCGAGAGTGTACGCATTCGTCCAGAATATCATTGAAGATCACAGAGCTACTCCAGCGAACATAGACAAAGGGGATTCCGACTTCGTTGATGTGTTATGTCACTGCAGGGGACTGAGGAGCTCAGCGACAGTGATATGGTTGCTGTTCTCTGGGAAATGATCTTCAGAGGTACTGATACTGTTGCAATTCTCTTGGAATGGATTCTTGCAAGGCTGATTCTTCATCCCAACATCCAGGCCAAGATTCACGAGGAGCTGGACTCTGTTGTCGGAAACTCTCGGCAATTAACAGAATCTGACATTCCTAAGCTCCACTATCTGCAAGCAGTTGTGAAGGAGGTTCTGAGGATCCACCCACCTGGGCCATTGCTCTCTTGGGCTAGGCGTTCCATCCATGATGTCCATGTCGGTGAGCACCTCATTCCTGCTGGTACAACTGCATATGTAAATATGTGGGCCATCACTCATGATGAGAAGATATGGACCGACCCTCTCAGCTTCAAACCAGAGCGGTTCTTGCCATCCGCTGGGGGATTGGATGTTAACATCATGGGAAGTGATCTGAGGCTGGCACCCTTCGGATCAGGACGAAGGGCTTGCCCTGGAAAGGCCTTAGGATTGCAAACTGTCCATACATGGCTTGCAAGGATGCTCCATCATTTCGAATGGTTGCCTTCACCAGATCATCCTGTAGACCTTACGGAGGTCTTAAGGCTATCATGTGAGATGAAAGCTCCACTCTTTGCAAAACCCATCAAAAGGAACACAGTACGTTTTCAATAGTGGGGAGCAAACAGCTCCCTTGGCTAGCAACTTTCTTCATTGTAGAAAATGTCCCAGCCATTGTAGATTCCTGTGATAAAGTTTTGGGTAAATTTTTTGCTAATTATTCTGCTGGTATCAAGAGAAGGGCAAGTCTACATGGAGGGTATATGTGGTGTGGGAACGGACTGTAATGGGTTTTAGATGTGGATTTGCGTAGATGAACCTCCAGGTGGAAAAGTCTGCTGTCCTATACTGTGTGTGTCTGCATACCCAAACTTTTACTGGTAATGAGGTATTGGTTATGGCAGAAATTTGTGTACTTTTGTGATTCTGATCGGATCCGAATATATATCTTAAATATAATGAATGGTGATTTGGTCC

Ace file of the UniGene sp_v1.1_unigene98

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 78A4 n=1 Tax=Pinus radiata RepID=C78A4_PINRA	-	-	63%
FL-Next	sp=Cytochrome P450 78A4; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	47%
Blast2go	cytochrome p450	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	floral organ development	GO:0048437	Biological Process	78%
Blast2go	leaf formation	GO:0010338	Biological Process	78%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	78%
Blast2go	positive regulation of organ growth	GO:0046622	Biological Process	78%
Blast2go	regulation of growth rate	GO:0040009	Biological Process	78%
Blast2go	positive regulation of cell proliferation	GO:0008284	Biological Process	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O65012

Fln msg: Overlapping hits, possible frame ERROR between 1303 and 1285,

Fln protein: MDANDHSHHFSQAESGAWWLLALPVAINNKVLTIFTPEAFCNTWMLLVLLIAMAYVLLSWLSPGGPAWGGSLKRKPTIPGPRGLPILGNLTVMCSLAHQRLAYLAQACNAQKLMAFSMGFTRAVICSQPEVAKAILNSSAFADRPIKESAYQLMFDRAIGFAPYSEYWKNLRRIAALHLFSARRISAFESHRQALTNSMLETIELLAKSQPNSSVKIREILQKTSLNNIMGSVFGRSYSFGSGDSESEELASMVKEGYDLLGIFNWADHLPFIGFLDLQGIRRRCSDLVPRVYAFVQNIIEDHRATPANIDKGDSDFVDxxxxxxxxEELSDSDMVAVLWEMIFRGTDTVAILLEWILARLILHPNIQAKIHEELDSVVGNSRQLTESDIPKLHYLQAVVKEVLRIHPPGPLLSWARRSIHDVHVGEHLIPAGTTAYVNMWAITHDEKIWTDPLSFKPERFLPSAGGLDVNIMGSDLRLAPFGSGRRACPGKALGLQTVHTWLARMLHHFEWLPSPDHPVDLTEVLRLSCEMKAPLFAKPIKRNTVRFQ*

Protein Length: 551

Fln nts: AGTGTCAATTTTACCTGTGAATTCATTCTCTTTCCTTCTCCGCATCGCTCTTCCCTAGTCATTTCCATGCAAAACTCTCCAGCTTCCCCCTTCTTCTCTTTATAAAGCCCGCCAGAACCTGCACGGGGACTTCATTCCATCGTCCCTCTCCGGATTTGTATTGTTCGCAACAATCTAATCCAATTTCCCAGAGCTCTTCACGGCTTTTGAGGTTTTCTGGTCTGTCTTGCATTTGAGAATCATCGTTCTAGAGACGTGTATCCACTGAACCAAGAAAATTAGAATTCCCCATTTCCCAACCTGCGATTTCAAGCTCGAAAAAGCC_-_ATGGATGCCAACGACCATTCGCATCACTTTTCTCAGGCTGAATCTGGTGCCTGGTGGCTGCTAGCCCTGCCTGTTGCCATTAACAACAAGGTTCTTACTATATTTACCCCTGAAGCATTTTGTAATACATGGATGCTTTTAGTTTTGCTTATAGCCATGGCGTATGTTCTACTCTCTTGGCTTTCACCCGGAGGTCCTGCTTGGGGCGGTTCCCTGAAACGGAAACCCACAATCCCGGGACCCAGGGGATTACCGATATTGGGAAACCTCACTGTCATGTGCAGCCTCGCACACCAGCGCCTTGCTTACCTGGCACAAGCCTGCAATGCTCAGAAGCTTATGGCCTTTAGTATGGGTTTCACCCGCGCTGTCATATGCAGCCAGCCTGAAGTCGCCAAGGCGATTCTTAACAGCTCGGCCTTTGCAGATAGGCCCATTAAGGAATCCGCTTATCAACTGATGTTTGATAGAGCAATTGGGTTTGCTCCATACAGTGAGTACTGGAAAAATCTCAGGCGAATTGCTGCTCTACACCTCTTCTCTGCACGAAGAATCTCTGCCTTCGAATCCCACAGACAGGCCTTGACGAACTCCATGTTGGAAACCATTGAGCTGTTGGCGAAGTCACAGCCCAATTCTTCTGTGAAAATCCGTGAGATTTTGCAGAAGACTTCGTTGAATAACATCATGGGGTCAGTATTTGGGAGGAGTTACAGCTTTGGCTCTGGAGATTCTGAGTCTGAAGAGCTGGCTTCAATGGTGAAAGAGGGATATGACCTCTTGGGTATATTCAATTGGGCAGACCACCTTCCTTTTATAGGATTTCTTGATTTACAGGGGATCAGGAGGAGGTGTTCTGACTTGGTTCCGAGAGTGTACGCATTCGTCCAGAATATCATTGAAGATCACAGAGCTACTCCAGCGAACATAGACAAAGGGGATTCCGACTTCGTTGATxxxxxxxxxxxxxxxxxxxxxxxxGAGGAGCTCAGCGACAGTGATATGGTTGCTGTTCTCTGGGAAATGATCTTCAGAGGTACTGATACTGTTGCAATTCTCTTGGAATGGATTCTTGCAAGGCTGATTCTTCATCCCAACATCCAGGCCAAGATTCACGAGGAGCTGGACTCTGTTGTCGGAAACTCTCGGCAATTAACAGAATCTGACATTCCTAAGCTCCACTATCTGCAAGCAGTTGTGAAGGAGGTTCTGAGGATCCACCCACCTGGGCCATTGCTCTCTTGGGCTAGGCGTTCCATCCATGATGTCCATGTCGGTGAGCACCTCATTCCTGCTGGTACAACTGCATATGTAAATATGTGGGCCATCACTCATGATGAGAAGATATGGACCGACCCTCTCAGCTTCAAACCAGAGCGGTTCTTGCCATCCGCTGGGGGATTGGATGTTAACATCATGGGAAGTGATCTGAGGCTGGCACCCTTCGGATCAGGACGAAGGGCTTGCCCTGGAAAGGCCTTAGGATTGCAAACTGTCCATACATGGCTTGCAAGGATGCTCCATCATTTCGAATGGTTGCCTTCACCAGATCATCCTGTAGACCTTACGGAGGTCTTAAGGCTATCATGTGAGATGAAAGCTCCACTCTTTGCAAAACCCATCAAAAGGAACACAGTACGTTTTCAATAG___TGGGGAGCAAACAGCTCCCTTGGCTAGCAACTTTCTTCATTGTAGAAAATGTCCCAGCCATTGTAGATTCCTGTGATAAAGTTTTGGGTAAATTTTTTGCTAATTATTCTGCTGGTATCAAGAGAAGGGCAAGTCTACATGGAGGGTATATGTGGTGTGGGAACGGACTGTAATGGGTTTTAGATGTGGATTTGCGTAGATGAACCTCCAGGTGGAAAAGTCTGCTGTCCTATACTGTGTGTGTCTGCATACCCAAACTTTTACTGGTAATGAGGTATTGGTTATGGCAGAAATTTGTGTACTTTTGTGATTCTGATCGGATCCGAATATATATCTTAAATATAATGAATGGTGATTTGGTCC

Fln Alignment:

sp_v1.1_unigene98___WWLLALPVAINN-KVLTIFTPEAFCNTWM-----LLVLLIAMAYVLLSWLSPGGPAWGGSLKR-KPTIPGPRGLPILGNLTVMC-SLAHQRLAYLAQACNAQKLMAFSMGFTRAVICSQPEVAKAILNSSAFADRPIKESAYQLMFDRAIGFAPYSEYWKNLRRIAALHLFSARRISAFESHRQALTNSMLETIELLAKSQPNSSVKIREILQKTSLNNIMGSVFGRSYSFGSGDSESEELASMVKEGYDLLGIFNWADHLPFIGFLDLQGIRRRCSDLVPRVYAFVQNIIEDHRATPANIDKGDS-DFVDVxxxxxxTEELSDSDMVAVLWEMIFRGTDTVAILLEWILARLILHPNIQAKIHEELDSVVGNSRQLTESDIPKLHYLQAVVKEVLRIHPPGPLLSWARRSIHDVHVGEHL-IPAGTTAYVNMWAITHDEKIWTDPLSFKPERFLPSAGGLDVNIMGSDLRLAPFGSGRRACPGKALGLQTVHTWLARMLHHFEWLPSPDHPVDLTEVLRLSCEMKAPLFAKPIKR
O65012____________WWVCVLPLFTKDGPAYFLHSSSDDVSAWRQWPLYIALLIVAVCAVLVSWLSPGGCAWAGRHKRGRVAIPGPKGWPIIGSLMDMSVGLPHRKLESLARLHGAKQLMSFSLGCTPAVITSDPEVARELLTSPHFANRPLKQSAQQLLFGRAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAMLDDIQ--KEYHSKGVVRVRRHLQGAALNNIMGSVFGRRFDMSHENEEVKKLREMVDEGFQLLGAFNWADHLPWLRPLDPLRIHARCARLVPRVTTFVSNIIEQHRREEQRRESGDQCDFVDVxxxxxxEDKLDEEDMIAVLWEMIFRGTDTTALLTEWTMAELVLHPEAQKKAQAELDAVVGHDRSVKDSDIPKLPYIQAVVKEALRMHPPGPLLSWARLSTEDVNMGDGMCVPAGTTAMVNMWSITHDPNIWESPYEFRPERFVVFEGGEEVDVRGNDLRLAPFGAGRRVCPGKALGLATVNLWVAKLLHHFEWLPHAEHPVDLSEVLKLSCEMARPLHCVPVTR

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
712		75		25	1.0
789		25		75	0.996473
791	75		25		0.996473
792			25	75	0.996473
1051	14			85	0.993533
1249		16		83	0.994512
1380		14		85	0.993533
1445	83		16		0.994512
1451	85		14		0.993533
1482	57		42		1.0
1550	85		14		0.993533
1612	11	88			0.923564
1613	88			11	0.923564
1619			11	88	0.923564
1620	11			88	0.923564
1815	83		16		0.994512
1841	20	80			0.995493
1842	75	25			0.996473
2081		10		90	0.90298
2339			60	20	0.99255
2341	25		50		0.995533
2342		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain