SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene97

Length: 3279 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene97
TCAATCGTCTGATCTGACGGAGGACACGAAGGATCTGAAGACTTTAGCGGAAGAGCGTGCCCTTATTGACCGGTTTGATGCATCACAATATGCATTTTTTGGAAAGGATGTTACGCAAGAGGTAGAGCTTGGAGGTTTAGAAGACGAAGATGATACTGGGCAATTGGGGACTCTTGAAGATGACGAATATGGGTTGTCCTCCGTTTGTGATAGAGACGAGGCTGAACAATCTGAGGCTGTATCTGAAGCTGATAATATGTCAGAGCTGTCCAGCTCCTTTATGAGGATGAACAGGGTCTCTGGGGAAACCAGGCTTCCAGCAAATAGTGGAGACTTGGGATTTGGAGCTAGAGAATCCCCTGAATGGTTTCGAGAAGCAGAGGTTTCCAATTGGTTGGATCAGCAGATATTAGATGCTGATATTGAACAGGAGGGAAGAAAATGGTGGCAGCAAGAGCAGCATTCTCCGGTGAGAGCACCAGAGCCAAAACCACTTTACAGGCACTCATCATATCCTCCACAACAGTGGGGAGGGGATCCAAAATTTCCTCAGTCATCATTCAGTTCATATCCTCCACTTCACTCACAAGTTATACAAAATCAACCACGTCACAGGTCTTATCCTGGTCAAGCATCACAGGTTGCCTTGTCTGGGCCACCTCAAATGTCACATTTTCCTGGACCGCAGCCTCATTTTGGAGGAATTCTGCCTTCTGTGATCCAATATGGAGGAGGGATGCCTCAATACAACTCTTCAGGTCATGTAATGGGTACACGGCCTCAGCAAGGCCACTGGTTGAATCAATCTAATATGCGACCAGGAGGGCCATCGGGGATTATGACTAATATGATGCATCAGCAAATGCCCCAACCCAATGCTATGTTGCCTACACAAGCACAGGCATTGCTGCAGCAGCAAAGATTTCAGGCGATGCAGAGTGGTGTTCCTCATTTTCCTCCTGTGCCAACTCAACAAGTATTCAATTCACATCCTCCTTCACCTGCCATGCACAGATACAATGAGGCATTTTTGGGTGGGGATTTTAGGGATCAGCGTAGTAAGTCTCAACAACGTGGAAAGCAAAATCAGCGTAATAGCCAACAGAATTCAGATACGAACAGCCAGTCAGGTAGGTCTAATAATGGCTGGCCACAGTTCCGATCAAAGTATATGTCTGCAGAAGAAATCGAGAGCATTGTTCGCATGCAGCTTGCTGCAACTCACACCAGTGATCCCTATGTTGATGATTATTATCATCAGGCTGTGCAAGCAAAGAATGCTACTGGTTCTCGAGGAAAAAGTCAGTTTGCACCATCTTCTCTACGTGAATTGCCGCCGCGAACAAAAGCTGTGGCAGAGCCACATGCTTATCTTCAGGTAGAGGCACTGGGAAGAGTGCCATTTTCTTCTATTCGCAGGCCTCGTCCACTTCTGGAAGTGGACGCTCCTTCAACACCGAATGCATCAGGTGATAATGTAAATGAACCCAAGGCCACTGAGAGACCCCTTGAACAGGAACCAATGCTGGCTGCAAGGATTGTTATTGAGGATGGGCTGTGCCTTCTTCTTGATGTGGATGATATTGATCGGTTTTTGCAAGTATCTCAACTACAAGATGGTGGGGCCCAATTAAAAAGAAGGCGGCAGATTCTGTTGGAAGGATTAGCAGCTTCTCTGCACTTGGTTGATCCTCTTGGAGCAGAGGGTGGCCATCCAATCGGGTTGGCTCCAAAAGATGACCTTGTTTTTCTACGCCTGGTTTCTCTTCCCAAAGGGAGAAAACTTCTATCAAAATACCTTCAGCTTCTCACACCTGGAAGTGAACTTGCACGCATTGTCTCCATGGCAGTTTTTCGTCATTTGCGTTTTTTGTTTGGTAGCTTAACTCCAGATCCCAGTGCTACAGTTGGGCTTGCGAAGACTGTGGCTATGTGTGTTTTCAACATGGATTTAGATGCCCTTATTGCTTGTTTGACAGCAGTAGTTTGTTCTTCAGAGCAACCACCACTTCGTCCTCTTGGAAGTTCTACTGGTGATGGGGCATCGGTGGTTCTAAAAGCTGTTCTGGAAAGAGCTACAGATATCCTGACAGATCCACGTGCTAGTTATACCATGCAAAAGAGAAATATTTGGCAGGCATCATTTAATTGCTTCTTCAAATTATTGACAACATACTGTACTAATAAGTATGATAGTATCATGCAATCCCTAATTTCATCATCAGGAAACTCAGCTTCAATTAGTTCAGCTGCTGCGTTTGCTATGAGCAAGGAAATGCCTGTGGAACTACTAAAGAGTAGCCTTCCTCATACGAATGAGAACCAGCGGAGACTTCTACTTGATTTTGCTCAGAGATCAATGCCAGGAGGTGGATTCAACTCCCAGAATGGCAGTGGTGGGCACGTGAGTACTGCGTCAGTTCCAGGCTAACATATGTGAACTTCTAAAGGACACATTCTCTCTCAACTGATGTATTCAATGCATTCTCTTTGGTGGCTCTTTTGGCATAATTACATCTGGAAATCCTCGAGGTGCATTTCACCATAAAGTTGAGTAAAGATTTTGTGTTGATGCCAGCCTCAACAATGTGGAATCAGATTGTACATGAAGCCCATCTTTTAGCCCAGAAGGTTTGTATATTCCTTCAGATTATATGCATAGCAGGGTGCTTATGTAGCTATATTAAGTGGTAAGGATCTAATGCTCATACGGTTTCTTCATAAATTCCCAAATGGCTTGCTGCACTATTTCTTTTTCACTATACTTGAAAGCAACAGTGTGATAAAATTCCCTGTCACAAAATGGCCGCCATTGGTTCTGTCAACACTGAATTTCAGTGTTGCTATAGGAGAGTTGAGTACACTGTTATCTTTAGAGGTTCAAAGTGGACTTTTCTAGTTTCTTGCAATAATCAATCTGTTTGTAGGTTTAGGTCAACATATTATGGCTGAAACTTCTTTTGGAGCCAGATTTTGAGTGCTCTATATTGAACTATAAGGCAGAAGATTTTAGGTATTGGCAATCTACACATGTGGATTTTAGATTTTTGCTTCTTATAGGGATACCTTTGTTTGTAAATTGAATATTTTGAAGTGTTCAGTGATATTGGAAACAGGCTAAAGTAGCTTGATGTCATTAATGGGACATTTCACGGGGAACAACCGAAAGGTGTCTATCAGCTATAAATTGTATATTCAAATGCCAAAGGATATTTCCAGGTCGATCTGGCTAAGATCTTCATGACGCGATAAATAAATTGAAATATGTTGTTGAATTTG

Ace file of the UniGene sp_v1.1_unigene97 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAT1 multi-domain protein	-	-	1.0e-27	20%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	49%
Blast2go	protein	-	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6HTJ0

Fln msg: atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning,

Fln protein: QSSDLTEDTKDLKTLAEERALIDRFDASQYAFFGKDVTQEVELGGLEDEDDTGQLGTLEDDEYGLSSVCDRDEAEQSEAVSEADNMSELSSSFMRMNRVSGETRLPANSGDLGFGARESPEWFREAEVSNWLDQQILDADIEQEGRKWWQQEQHSPVRAPEPKPLYRHSSYPPQQWGGDPKFPQSSFSSYPPLHSQVIQNQPRHRSYPGQASQVALSGPPQMSHFPGPQPHFGGILPSVIQYGGGMPQYNSSGHVMGTRPQQGHWLNQSNMRPGGPSGIMTNMMHQQMPQPNAMLPTQAQALLQQQRFQAMQSGVPHFPPVPTQQVFNSHPPSPAMHRYNEAFLGGDFRDQRSKSQQRGKQNQRNSQQNSDTNSQSGRSNNGWPQFRSKYMSAEEIESIVRMQLAATHTSDPYVDDYYHQAVQAKNATGSRGKSQFAPSSLRELPPRTKAVAEPHAYLQVEALGRVPFSSIRRPRPLLEVDAPSTPNASGDNVNEPKATERPLEQEPMLAARIVIEDGLCLLLDVDDIDRFLQVSQLQDGGAQLKRRRQILLEGLAASLHLVDPLGAEGGHPIGLAPKDDLVFLRLVSLPKGRKLLSKYLQLLTPGSELARIVSMAVFRHLRFLFGSLTPDPSATVGLAKTVAMCVFNMDLDALIACLTAVVCSSEQPPLRPLGSSTGDGASVVLKAVLERATDILTDPRASYTMQKRNIWQASFNCFFKLLTTYCTNKYDSIMQSLISSSGNSASISSAAAFAMSKEMPVELLKSSLPHTNENQRRLLLDFAQRSMPGGGFNSQNGSGGHVSTASVPG*

Protein Length: 811

Fln nts: TCAATCGTCTGATCTGACGGAGGACACGAAGGATCTGAAGACTTTAGCGGAAGAGCGTGCCCTTATTGACCGGTTTGATGCATCACAATATGCATTTTTTGGAAAGGATGTTACGCAAGAGGTAGAGCTTGGAGGTTTAGAAGACGAAGATGATACTGGGCAATTGGGGACTCTTGAAGATGACGAATATGGGTTGTCCTCCGTTTGTGATAGAGACGAGGCTGAACAATCTGAGGCTGTATCTGAAGCTGATAATATGTCAGAGCTGTCCAGCTCCTTTATGAGGATGAACAGGGTCTCTGGGGAAACCAGGCTTCCAGCAAATAGTGGAGACTTGGGATTTGGAGCTAGAGAATCCCCTGAATGGTTTCGAGAAGCAGAGGTTTCCAATTGGTTGGATCAGCAGATATTAGATGCTGATATTGAACAGGAGGGAAGAAAATGGTGGCAGCAAGAGCAGCATTCTCCGGTGAGAGCACCAGAGCCAAAACCACTTTACAGGCACTCATCATATCCTCCACAACAGTGGGGAGGGGATCCAAAATTTCCTCAGTCATCATTCAGTTCATATCCTCCACTTCACTCACAAGTTATACAAAATCAACCACGTCACAGGTCTTATCCTGGTCAAGCATCACAGGTTGCCTTGTCTGGGCCACCTCAAATGTCACATTTTCCTGGACCGCAGCCTCATTTTGGAGGAATTCTGCCTTCTGTGATCCAATATGGAGGAGGGATGCCTCAATACAACTCTTCAGGTCATGTAATGGGTACACGGCCTCAGCAAGGCCACTGGTTGAATCAATCTAATATGCGACCAGGAGGGCCATCGGGGATTATGACTAATATGATGCATCAGCAAATGCCCCAACCCAATGCTATGTTGCCTACACAAGCACAGGCATTGCTGCAGCAGCAAAGATTTCAGGCGATGCAGAGTGGTGTTCCTCATTTTCCTCCTGTGCCAACTCAACAAGTATTCAATTCACATCCTCCTTCACCTGCCATGCACAGATACAATGAGGCATTTTTGGGTGGGGATTTTAGGGATCAGCGTAGTAAGTCTCAACAACGTGGAAAGCAAAATCAGCGTAATAGCCAACAGAATTCAGATACGAACAGCCAGTCAGGTAGGTCTAATAATGGCTGGCCACAGTTCCGATCAAAGTATATGTCTGCAGAAGAAATCGAGAGCATTGTTCGCATGCAGCTTGCTGCAACTCACACCAGTGATCCCTATGTTGATGATTATTATCATCAGGCTGTGCAAGCAAAGAATGCTACTGGTTCTCGAGGAAAAAGTCAGTTTGCACCATCTTCTCTACGTGAATTGCCGCCGCGAACAAAAGCTGTGGCAGAGCCACATGCTTATCTTCAGGTAGAGGCACTGGGAAGAGTGCCATTTTCTTCTATTCGCAGGCCTCGTCCACTTCTGGAAGTGGACGCTCCTTCAACACCGAATGCATCAGGTGATAATGTAAATGAACCCAAGGCCACTGAGAGACCCCTTGAACAGGAACCAATGCTGGCTGCAAGGATTGTTATTGAGGATGGGCTGTGCCTTCTTCTTGATGTGGATGATATTGATCGGTTTTTGCAAGTATCTCAACTACAAGATGGTGGGGCCCAATTAAAAAGAAGGCGGCAGATTCTGTTGGAAGGATTAGCAGCTTCTCTGCACTTGGTTGATCCTCTTGGAGCAGAGGGTGGCCATCCAATCGGGTTGGCTCCAAAAGATGACCTTGTTTTTCTACGCCTGGTTTCTCTTCCCAAAGGGAGAAAACTTCTATCAAAATACCTTCAGCTTCTCACACCTGGAAGTGAACTTGCACGCATTGTCTCCATGGCAGTTTTTCGTCATTTGCGTTTTTTGTTTGGTAGCTTAACTCCAGATCCCAGTGCTACAGTTGGGCTTGCGAAGACTGTGGCTATGTGTGTTTTCAACATGGATTTAGATGCCCTTATTGCTTGTTTGACAGCAGTAGTTTGTTCTTCAGAGCAACCACCACTTCGTCCTCTTGGAAGTTCTACTGGTGATGGGGCATCGGTGGTTCTAAAAGCTGTTCTGGAAAGAGCTACAGATATCCTGACAGATCCACGTGCTAGTTATACCATGCAAAAGAGAAATATTTGGCAGGCATCATTTAATTGCTTCTTCAAATTATTGACAACATACTGTACTAATAAGTATGATAGTATCATGCAATCCCTAATTTCATCATCAGGAAACTCAGCTTCAATTAGTTCAGCTGCTGCGTTTGCTATGAGCAAGGAAATGCCTGTGGAACTACTAAAGAGTAGCCTTCCTCATACGAATGAGAACCAGCGGAGACTTCTACTTGATTTTGCTCAGAGATCAATGCCAGGAGGTGGATTCAACTCCCAGAATGGCAGTGGTGGGCACGTGAGTACTGCGTCAGTTCCAGGCTAA___CATATGTGAACTTCTAAAGGACACATTCTCTCTCAACTGATGTATTCAATGCATTCTCTTTGGTGGCTCTTTTGGCATAATTACATCTGGAAATCCTCGAGGTGCATTTCACCATAAAGTTGAGTAAAGATTTTGTGTTGATGCCAGCCTCAACAATGTGGAATCAGATTGTACATGAAGCCCATCTTTTAGCCCAGAAGGTTTGTATATTCCTTCAGATTATATGCATAGCAGGGTGCTTATGTAGCTATATTAAGTGGTAAGGATCTAATGCTCATACGGTTTCTTCATAAATTCCCAAATGGCTTGCTGCACTATTTCTTTTTCACTATACTTGAAAGCAACAGTGTGATAAAATTCCCTGTCACAAAATGGCCGCCATTGGTTCTGTCAACACTGAATTTCAGTGTTGCTATAGGAGAGTTGAGTACACTGTTATCTTTAGAGGTTCAAAGTGGACTTTTCTAGTTTCTTGCAATAATCAATCTGTTTGTAGGTTTAGGTCAACATATTATGGCTGAAACTTCTTTTGGAGCCAGATTTTGAGTGCTCTATATTGAACTATAAGGCAGAAGATTTTAGGTATTGGCAATCTACACATGTGGATTTTAGATTTTTGCTTCTTATAGGGATACCTTTGTTTGTAAATTGAATATTTTGAAGTGTTCAGTGATATTGGAAACAGGCTAAAGTAGCTTGATGTCATTAATGGGACATTTCACGGGGAACAACCGAAAGGTGTCTATCAGCTATAAATTGTATATTCAAATGCCAAAGGATATTTCCAGGTCGATCTGGCTAAGATCTTCATGACGCGATAAATAAATTGAAATATGTTGTTGAATTTG

Fln Alignment:

sp_v1.1_unigene97___DTKDLKTLAEERALIDRFDASQYAFFGKDVTQEVXXXXXXXXXXXXXXGTLEDDEYGLSSVCDRDEAEQSEAVSEADNMSELSSSFMRMNRVSGETRLPANSGDLGFGA--RESP---EWFREAEVSNWLDQQILDADIEQEGRKWWQQEQHSPVRAPEPKPLYRHSSYP-----PQQWGGDPKF-PQSSFSSYPPLHSQVIQNQPRHRSYPGQASQVALSGP------PQMSHFPGPQPHFGGILPSVIQYGGGMPQYNSSGHVMGTRPQQGHWLNQSNMRPGGPSGIMTNMMHQQMPQPNAMXXXXXXXXXXXXXXXXXQSGVP---HFPPVPTQQVFNSHPPSPAMHRYNEAFLGGDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSNNGWPQFRSKYMSAEEIESIVRMQLAATHTSDPYVDDYYHQAVQAKNATGSRGKSQFAPSSLRELPPRTKAVAEPHAYLQVEALGRVPFSSIRRPRPLLEVDAPSTPNASGDNVNEPKATERPLEQEPMLAARIVIEDGLCLLLDVDDIDRFLQVSQLQDGGAQLKRRRQILLEGLAASLHLVDPLGAEGGHPIGLAPKDDLVFLRLVSLPKGRKLLSKYLQLLTPGSELARIVSMAVFRHLRFLFGSLTPDPSA---TVGLAKTVAMCVFNMDLDALIACLTAVVCSSEQPPLRPLGSSTGDGASVVLKAVLERATDILTDPRAS--YTMQKRNIWQASFNCFFKLLTTYCTNKYDSIMQXXXXXXXXXXXXXXXXXXXXSKEMPVELLKSSLPHTNENQRRLLLDFAQRSMP
F6HTJ0____________DFKDLPEASSSDGAL--FDASQYEFFGQHAVEEVELGGLENEENIPVFGSV-DDEYQLF------EREESVGLSSLSDIDDLASTFSKLNRVVTGPRNPGVIGDRGSGSFSRESSSAADWAQDTDFPNWLDQHMFDAECSQEGKRWSSQPHASSAHLGESRPLYRTSSYPQQPQQPHHFSSEPILVPKSSFTSFPPGGSSQQASPRHHHSHHLNISSLTV-GPQLHLSAPNLSPLSNSNIHLSG-LPHGLHYGGNIPQFNPPGLSVNNRPLN-HWVNHAGLIHGDHPSLLNNILQQQLPHQNGIMPQQLMSQQQLQQQRLHHSVQPSMAHFSALRSQ-LYNTHP-SP-----QHKGMPGLSDMRDQRPKSTQRSKQNMRFSHQASDSSSQKSDNGLVQFRSKYMTADEIESILRMQHAATHSNDPYIDDYYHQARLAKKSAESRLKHHFYPSHLKDLPTRGRNNTEQHSHLPVDALGRIAFSSIRRPRPLLEVDSPS--SGSNDGSTEQNVTVKPLEQEPMLAARIAIEDGLCLLLDVDDIDRVLQFSPPQDGGIQLRRKRQMLLEGLAASLQLVDPLG-KSGHAVGLAPNDDLVFLRLVSLPKGRKLLFRYIQLLFPGGELARIVCMAIFRHLRFLFGGLPSDKGAAETTIDLAKTVSTCVNGMDLRALSACLVAVVCSSEQPPLRPLGSPAGDGASIILKSVLERATELLTDPHVAGKCSMPNRALWQASFDEFFSLLTKYCLSKYETIIH---------------------REMPVELLRASLPHTDEHQRKLLLDFAQRSMP

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1446			20	80	0.995493
1515	87		12		0.992554
2350		83		16	0.994512
2439		12		87	0.992554
2511		75	8	16	0.99999
2689	80	20			0.995493
2705	20		80		0.995493
2708			75	25	0.996473
2712	75		25		0.996473
2718	25			75	0.996473
2720	75	25			0.996473
2722	25			75	0.996473
2724	75		25		0.996473
2726		25	75		0.996473
2732		25	75		0.996473
2916	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain