SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89

Length: 1247 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene89

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	plastid-lipid associated protein PAP-related / fibrillin-related [Arabidopsis thaliana] sp\|Q941D3.1\|PAP8_ARATH RecName: Full=Probable plastid-lipid-associated protein 8, chloroplastic; AltName: Full=Fibrillin-8; Flags: Precursor gb\|AAK97710.1\| AT5g19940/F	-	-	4.2039e-45	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	plastid-lipid associated protein pap-related fibrillin-related	-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPK5

Fln msg: your sequence is longer than subject: 324 - 265

Fln protein: MKWHVLGWMGDHIQALSNSCFYRTHIERHPILHKTRIIFLKILVHDHVPRCWPRITQPMALVNSSSYLSLFSATSTFIRPKVRANVNNWLGDAFSTSKSNANGIEGCNAQHPFEGLAITSVVRPRAVIRSSVVRASPAPTSLQQTENSAENLLGTLLSMVEGTDRGAKLSNEEHERVARIVSQLECLCMPEPLKSPFILGEWDVEYCSNPTSPGGYYRSAIGRLLLRTKEMTQSIQAPDFVGNKVVFSALNAIDGEVSLEGKFTPLDNKWIEITFDPPTLKFGSFNFQYGGQSSVKIAIIYLDERIRLGRGSRGSIFIFKRRG*

Protein Length: 325

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCATTAACAAAACAAA_-_ATGAAGTGGCATGTCCTTGGTTGGATGGGCGACCATATCCAAGCTTTATCCAATTCTTGTTTCTATAGGACACACATCGAACGCCACCCAATTTTGCACAAAACCAGGATCATCTTTCTTAAGATATTGGTCCACGACCACGTACCAAGGTGTTGGCCACGCATTACTCAGCCGATGGCCCTCGTCAATTCGTCTTCATATCTTTCTCTGTTCTCAGCAACATCAACATTCATTAGACCAAAAGTCCGTGCCAACGTTAACAATTGGCTCGGCGATGCCTTCAGCACCTCTAAATCCAATGCAAATGGAATTGAGGGGTGCAATGCACAACACCCATTTGAGGGCTTGGCAATCACCAGCGTTGTTCGACCCAGAGCAGTTATTAGAAGCTCAGTAGTGAGAGCATCTCCTGCTCCTACTTCTCTTCAACAGACTGAAAACAGTGCAGAAAATCTTTTGGGCACTCTTCTTTCCATGGTAGAGGGAACAGACAGAGGTGCCAAGTTAAGCAATGAAGAGCATGAAAGGGTTGCTAGGATTGTCTCTCAGTTGGAGTGTTTATGTATGCCAGAGCCCCTCAAGTCTCCATTTATACTTGGAGAGTGGGATGTTGAGTATTGCTCAAACCCAACATCACCTGGAGGTTACTATCGAAGTGCAATTGGGAGACTGCTATTGAGAACAAAGGAAATGACACAGAGTATACAGGCGCCAGATTTTGTGGGTAATAAGGTGGTCTTCTCTGCTCTCAATGCAATTGATGGAGAAGTTTCCTTGGAAGGGAAATTCACGCCTTTGGACAACAAATGGATTGAAATTACATTTGACCCACCTACTTTGAAGTTTGGCTCATTTAATTTTCAGTATGGAGGTCAGAGTAGTGTGAAAATTGCAATAATATATTTGGATGAGAGAATTAGGCTTGGCAGAGGTTCAAGGGGTTCGATTTTTATCTTTAAAAGGCGTGGCTAG___TGTTGATCCTATGGATATAAGATTTAGAAGCATTGTTCTAATAAGTTTCCTAGTATTTGTTAACGAGGGTGATGGATGAGGCAAGGTTAGTCATGGAATATCATTTGGCCAAGTAGTCTTGAACCAATGCAATTGCCAAGAAATGATaTCTTGTAATTTTATAATTcTGATTGGCGACTGAATATATTGAAGTTAAAATAACAGTTTTAAATACAAATTATATTTGGCTGC

Fln Alignment:

sp_v1.1_unigene89___MALVNXXXXXXXXXXXXXXIRPKVRANVNNWLGDAFSTSKSNANGIEGCNAQHPFEGLAITSVVRPRAVIRSSVVRASPAPTSLQQTENSAENLLGTLLSMVEGTDRGAKLSNEEHERVARIVSQLECLCMPEPLKSPFILGEWDVEYCSNPTSPGGYYRSAIGRLLLRTKEMTQSIQAPDFVGNKVVFSALNAIDGEVSLEGKFTPLDNKWIEITFDPPTLKFGSFNFQYGGQSSVKIAIIYLDEXXXXXXXXXXXXFIFKRRG
A9NPK5____________MALANSSSPLSLFSATPAIIRPKVRANINGRLIDAFSRYKPNGNGIEGCNAKHPIEGFAITSIVRLRAVIRSSVVRASSAATSLQQTENSAENLLGTLLSMVEGTDRGAKLSNEEHERVARIVSQLEHLCIPEPLKSPFILGEWNVEYCSNPRSPGGYYRSAIGRLLLRTKEMTQSIQAPDFVGNRVAFSAFNAIDGEVSLKGKFTPLDNKWIEITFDSPSLKFGPFDFQYGGESSVKIAIIYLDERIRLGRGSRGSIFIFKRCG

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
397		83		16	0.994512
454	16	83			0.994512
456		83	16		0.994512
457		83	16		0.994512
458			16	83	0.994512
597			20	80	0.995493
603		75		25	0.996473
632		25		75	0.996473
698		42		57	1.0
721			25	75	1.0
724		25		75	1.0
726	71			28	1.0
729	71	28			1.0
731	71			28	1.0
732	71			28	1.0
736	71	28			1.0
737	71			28	1.0
738	71		28		1.0
740		28	71		1.0
743	71			28	1.0
793		42		57	1.0
1057		75		25	1.0
1168		66		33	0.997452
1187		66		33	0.997452
1196			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain