SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81

Length: 2098 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene81
CGTCGTGACCTTGGCTGTCACTCATGTTTCTGCACCCAATTTACAATTTTGGATTGTTTTTCTTTCGATCCACGACTGTTTTGCTCCCTTGCGTCCAATGCAATAAGGAACTCCGCTCCTTACAACGTTGCAAATTCAAGTTCTCTGTAAATCTTGGTAGTAATGGGTCGTATTGTACAATGCAGGACGCATAAGCTTTGGTAGGTCTATGATTCTTCTCAGAAATGTACGAATTGCGAAAGCGTGGTCACCTTTATAAAATTCCGAGCTATTTCTGGCCATTGTCACAGAACACCTGTTATGAAGACTATAAAGCATAAAATAGTTGGGGTTCCTAAACGAACTGATACTGATGGAGCCTGAGAATAATTCTACTCGGGTGGAGATACAGACAGAGGATCAAATGACAGGGGAGCCACACCATTCCGAGATGTCTACAACAATTGCACCGAAGTATCACAAATTCATTGCCGATCCTTGCTGCATCCAATTATGTGGGAAACCAAACCCTCTTGCGGCACGATACGTCTACGCGTTCATCTTTCTCTTGACAAATTTGCTAGCATGGATAATTCGGGATTATGGCCACAAGGTATTAGCAGGGCTGAAGCATTTGAAAGACTGTCAAGGAGGCCATGACTGCTTAGGCACAGAAGGTGTACTTCGCGTTAGCCTAGGCTGCTTTATATTTTATTTCACCATGTTTCTTACAACAGTTGGATCTACAAAGGTACATGAATCTCGTGACTCGTGGCATTCAGGATGGTGGCCTCTGAAGAGCTTTATGTGGATTACTCTCATGGTGGGCCCACTTTTTCTTCCATCGGCTTTCATTCAATTCTATGGTGAAATTGCCAGATTTGGTGCTGGGATATTTCTCATCATACAACTCATTAGTGTAATCAATTTCATCACCTGGTGGAATAACTATTGGCTGTCAGAAAATAATGCTGAGGAACGTCGAACCCTAGCGATTACAATGTCAACAACGGCCTATGTTGCTTCCTTGATTGGAATCATATTGTTGTACATTTGGTATGCTCCAAGACCGTCATGTGCCCTCAACATATTTTTCATCACGTGGACACTTACTCTTATTCCATTAATAACTGGCATCTCCCTCCATTCAAAAGTTAATGCAAGCCTTATGACGTCAGGACTTATGGGGCTGTATCTTGTATTCCTTTGCTGGTCTGCTCTTAGGAGTGAACCGGCAGCAGAGAAATGTAATACAAGGTCACAGGCAACAGGAAGAGGTCCAGACTGGATCACAATTATCAGTTTTATGATTGCAATGCTTGCAATAGTAATAGCAACATTTTCTACAGGCGTTGATTCAAAATCTTTCCAATTTCAGCAAGATGAAGTCGAGGAAGTCGAGGAAGGGGATGATGTTCCATATAGCTATGGATTTTTCCATTTTATTTTCTCCATGGGAGCCATGTACTTCGGTATGTTATTTATCGGTTGGAACTTGCACCAAACGATGCAAAGGTGGAGCCTAGATGTTGGCTGGATTAGTACCTGGGTGAAGATTGTGAACGAATGGCTTGCTGCAGGGCTATTCATTTGGACATTGGTTGCTCCAGTTGTATGGAAGAAAATAACTAACAGTGTATCGACATCGAACTCGACATCGAACACCCCAGTCTGATCGGCTGATATTCAATTCATTGGTTATGGCTTAGGATGCATTTTGAAAGTCTATATATATTTCTTCAATATTTATTATTTCCTTGTACCATATGAGGCCCTGTTAAGGTTGTCATTTAACAGAGCATCTATAGCCGGCTTTCAAAGACAATTTCATTTGTATATACTAAGGGTTTGAAAAATCGGCGAAGTCCATGCGTGAATTTAGTCACTTTGAAGACTGCAGTCATAGCAAATGTCAATATGCAATTGATAATGACCCTATTGGGCTATTCATTAGTACCTTAGGAGCTGCACTTGGTGGCAACAGAAAACTTATGCTTTCTGAATAAACGCTTTTTCTTATCAGAGTAAAGGACTGTCAAATCTTTCCACCAGGAGGATGCTTTCATATCATCGTAAAGGAGAAGAGAATGAACAAAGTTATCAGATAGAATTTTTTAGC

Ace file of the UniGene sp_v1.1_unigene81

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MEE55; MEE55 (maternal effect embryo arrest 55)	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	mee55 (maternal effect embryo arrest 55)	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQS2

Fln msg: your sequence is longer than subject: 434 - 343

Fln protein: MEPENNSTRVEIQTEDQMTGEPHHSEMSTTIAPKYHKFIADPCCIQLCGKPNPLAARYVYAFIFLLTNLLAWIIRDYGHKVLAGLKHLKDCQGGHDCLGTEGVLRVSLGCFIFYFTMFLTTVGSTKVHESRDSWHSGWWPLKSFMWITLMVGPLFLPSAFIQFYGEIARFGAGIFLIIQLISVINFITWWNNYWLSENNAEERRTLAITMSTTAYVASLIGIILLYIWYAPRPSCALNIFFITWTLTLIPLITGISLHSKVNASLMTSGLMGLYLVFLCWSALRSEPAAEKCNTRSQATGRGPDWITIISFMIAMLAIVIATFSTGVDSKSFQFQQDEVEEVEEGDDVPYSYGFFHFIFSMGAMYFGMLFIGWNLHQTMQRWSLDVGWISTWVKIVNEWLAAGLFIWTLVAPVVWKKITNSVSTSNSTSNTPV*

Protein Length: 435

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTCTGCACCCAATTTACAATTTTGGATTGTTTTTCTTTCGATCCACGACTGTTTTGCTCCCTTGCGTCCAATGCAATAAGGAACTCCGCTCCTTACAACGTTGCAAATTCAAGTTCTCTGTAAATCTTGGTAGTAATGGGTCGTATTGTACAATGCAGGACGCATAAGCTTTGGTAGGTCTATGATTCTTCTCAGAAATGTACGAATTGCGAAAGCGTGGTCACCTTTATAAAATTCCGAGCTATTTCTGGCCATTGTCACAGAACACCTGTTATGAAGACTATAAAGCATAAAATAGTTGGGGTTCCTAAACGAACTGATACTG_-_ATGGAGCCTGAGAATAATTCTACTCGGGTGGAGATACAGACAGAGGATCAAATGACAGGGGAGCCACACCATTCCGAGATGTCTACAACAATTGCACCGAAGTATCACAAATTCATTGCCGATCCTTGCTGCATCCAATTATGTGGGAAACCAAACCCTCTTGCGGCACGATACGTCTACGCGTTCATCTTTCTCTTGACAAATTTGCTAGCATGGATAATTCGGGATTATGGCCACAAGGTATTAGCAGGGCTGAAGCATTTGAAAGACTGTCAAGGAGGCCATGACTGCTTAGGCACAGAAGGTGTACTTCGCGTTAGCCTAGGCTGCTTTATATTTTATTTCACCATGTTTCTTACAACAGTTGGATCTACAAAGGTACATGAATCTCGTGACTCGTGGCATTCAGGATGGTGGCCTCTGAAGAGCTTTATGTGGATTACTCTCATGGTGGGCCCACTTTTTCTTCCATCGGCTTTCATTCAATTCTATGGTGAAATTGCCAGATTTGGTGCTGGGATATTTCTCATCATACAACTCATTAGTGTAATCAATTTCATCACCTGGTGGAATAACTATTGGCTGTCAGAAAATAATGCTGAGGAACGTCGAACCCTAGCGATTACAATGTCAACAACGGCCTATGTTGCTTCCTTGATTGGAATCATATTGTTGTACATTTGGTATGCTCCAAGACCGTCATGTGCCCTCAACATATTTTTCATCACGTGGACACTTACTCTTATTCCATTAATAACTGGCATCTCCCTCCATTCAAAAGTTAATGCAAGCCTTATGACGTCAGGACTTATGGGGCTGTATCTTGTATTCCTTTGCTGGTCTGCTCTTAGGAGTGAACCGGCAGCAGAGAAATGTAATACAAGGTCACAGGCAACAGGAAGAGGTCCAGACTGGATCACAATTATCAGTTTTATGATTGCAATGCTTGCAATAGTAATAGCAACATTTTCTACAGGCGTTGATTCAAAATCTTTCCAATTTCAGCAAGATGAAGTCGAGGAAGTCGAGGAAGGGGATGATGTTCCATATAGCTATGGATTTTTCCATTTTATTTTCTCCATGGGAGCCATGTACTTCGGTATGTTATTTATCGGTTGGAACTTGCACCAAACGATGCAAAGGTGGAGCCTAGATGTTGGCTGGATTAGTACCTGGGTGAAGATTGTGAACGAATGGCTTGCTGCAGGGCTATTCATTTGGACATTGGTTGCTCCAGTTGTATGGAAGAAAATAACTAACAGTGTATCGACATCGAACTCGACATCGAACACCCCAGTCTGA___TCGGCTGATATTCAATTCATTGGTTATGGCTTAGGATGCATTTTGAAAGTCTATATATATTTCTTCAATATTTATTATTTCCTTGTACCATATGAGGCCCTGTTAAGGTTGTCATTTAACAGAGCATCTATAGCCGGCTTTCAAAGACAATTTCATTTGTATATACTAAGGGTTTGAAAAATCGGCGAAGTCCATGCGTGAATTTAGTCACTTTGAAGACTGCAGTCATAGCAAATGTCAATATGCAATTGATAATGACCCTATTGGGCTATTCATTAGTACCTTAGGAGCTGCACTTGGTGGCAACAGAAAACTTATGCTTTCTGAATAAACGCTTTTTCTTATCAGAGTAAAGGACTGTCAAATCTTTCCACCAGGAGGATGCTTTCATATCATCGTAAAGGAGAAGAGAATGAACAAAGTTATCAGATAGAATTTTTTAGC

Fln Alignment:

sp_v1.1_unigene81___GKPNPLAARYVYAFIFLLTNLLAWIIRDYGHKVLAGLKHLKDCQGGHDCLGTEGVLRVSLGCFIFYFTMFLTTVGSTKVHESRDSWHSGWWPLKSFMWITLMVGPLFLPSAFIQFYGEIARFGAGIFLIIQLISVINFITWWNNYWLSENNAEERRTLAITMSTTAYVASLIGIILLYIWYAPRPSCALNIFFXXXXXXXXXXXXXXXXHSKVNASLMTSGLMGLYLVFLCWSALRSEPAAEKCNTRSQATGRGPDWITIISFMIAMLAIVIATFSTGVDSKSFQFQQXXXXXXXXXXXXPYSYGFFHFIFSMGAMYFGMLFIGWNLHQTMQR
A9NQS2____________GRAMAQVARYVYGFTFLLTNLLAWVVRDYSQSALAKLHYLKGCQGGHDCLGTEGVLRVSFGCFIFHFIMFLTTVGTTKLHEYRASWHSGLWPLKFFMWISFLLMPFLLPSTFIQLYGEVARFGAGIFLLIQLISVVKFITWWNDHWMSDDDAGHRRVPAIMVSTTAYSASVCGIILMYISYAPTASCSLNIFFITCSLILLQIMTGISLHSKANAGLLASGLMGLYIVFLCWSAIRSEPTMDNCNVRKQPTGKG-DWITIVSFIIALFAIVTAAFSAGIDSRVFQFRK---GEFQSEDDVPYGYGFFHFVFSMAATYFAMLFVGWNLHQSMER

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
654		57		42	1.0
681	57		42		1.0
915		40		60	1.0
947	80		20		0.995493
951			20	80	0.995493
1065		71		28	1.0
1066		71	28		1.0
1070	71			28	1.0
1366		28	71		1.0
1378	28		71		1.0
1404	87		12		0.992554
1406	87		12		0.992554
1409		12	87		0.992554
1416	85	14			0.993533
1419	20			80	0.995493
1420		20		80	0.995493
1423	20	80			0.995493
1584		12		87	0.992554
1622		10		90	0.90298
1625	90	10			0.90298
1626			10	90	0.90298
1627		90		10	0.90298
1631	90	10			0.90298
1633		90		10	0.90298
1636	90		10		0.90298
1641	90			10	0.90298
1646	11		88		0.923564
1655	90	10			0.90298
1665		10	90		0.90298
1666		90		10	0.90298
1669	90		10		0.90298
1670		10		90	0.90298
1671	88			11	0.923564
1672			10	90	0.90298
1677		10		90	0.90298
1829	90	10			0.90298
1845			90	10	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain