SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene78

Length: 2045 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene78
CGTCGTGACCTTGGCTGTCACTCATTTGGAAGGGCCGTCGTGCCCTTGGTGTCACTCTACTTACTGATTTGTATCAGTTCACAATGGCTTATGCATATTGGAAAGCTCACAAGCATCTGGATAAGGCAGTATTTGACTTATTTTTTCGAAAGAACCCCTTTGGTGGAGAGTACACTGTCTTTGCTGGGTTAGAAGAGTGTATACGGTTTGCTGCAACTTTCAAATTCAAGGAGGAGGAGATTGAATTTTTACGCACAACATTACCGCCAACATGTGAGGAGGGATTCTTTGATTATCTGAGAGGAATCAATTGTTCAGACATTGAGATATATGCAATACCAGAAGGTTCTGTTGTTTTTCCTAAGATACCCCTCATGAGGGTTGAAGGGCCCATTGCAGTTGTCCAGCTTTTGGAAACTCCGCTTGTGAATTTGGTTAATTATGCATCATTGGTTACTACAAATGCTGCAAGGCATAGGCGTGTTGCTGGGAGTTCTAAGATTTTGCTTGAATTTGGACTACGCCGAGCTCAAGGTCCTGATGGAGGGGTCAGTGCATCAAAATATTGCTACCTAGGCGGATTTGATGCAACCAGCAATGTTGATGCTGGGCGGCGATTTGGAATACCACTTCGAGGGACACACTCTCATGCCTTTGTCAGCTCATTCATGGGACCTGATGAGATCACAGACCGGGCACTTCCTAGATCTGATGGTACGGGTGTCTGTGAAGATTTTGTGATTTTGACACAGCACTGGCTAAGCAAATTACAAGCAGCAGATTCTCTTAAAGGGACATTCTCTGAGACCAATCATAGTGAATTGGCAGCCTTTATGTCATATGCTTTGGCTTTTCCAACAAAATTTCAGGCACTTGTGGACACTTATGATGTTATGAGAAGTGGGCTTCCCAACTTTTGTGCAGTTTCTTTGGCGCTTAATGAGTTAGGCTACAAGTCTCAGGGAATTAGGTTGGACTCAGGTGACCTTGCATATTTATCTACTGAGGCACGGGAATTCTTTTGTGCAATTGAAAAGGAATTCCGAGTTCCTGATTTTGGAAAGATGATAATTACTGCGAGCAATGATATCAATGAGGAAACTCTTGATGCATTGAACAAACAGGGGCATGAAGTGGATGCATTTGGGATAGGTACCCATCTCGTTACATGCTTTGCTCAACCTGCCCTCGGTTGTGTTTTTAAATTGGTAGAGATAAATGGTCAGCCTCGCATGAAATTATCTGAAGATGTCTCAAAGGTGTCAATTCCTTGCAAAAAGCAGTGTTATAGGTTGTATGGGAAGGATGGCTATCCTTTGGTGGACATAATGATTGGGGAAAATGAAGTGCCACCTAAAGAATGGGAGCGAATTTTATGCAGGCACCCATTCAATGAATCTAAGCGAGCATATGTGGTGCCACAACGAGTGGAGGAACTATATAAGTGCTACTGGTCAGGAAACTCAGGTAAACGGGAGCCCTTGCCGACACTGAAAGAAATTAGGGAGCGATGTCTAAGACAGTTGGCTGAAATGCGGCCTGACCACATGCGCGAGTTAAACCCGACACCTTACAAGGTAAGCGTGAGTGCAAAGCTTTATGACTTCATTCATTTTCTCTGGTTGAACGAGGCACCTGTTGGAGAATTACAGTGAAAGATCGCATATACCATTACTTATATTTTCAACAATTCTTTTGTTGTTATGAAAATTCTATTGAAATAAATTGAAATAGTTTGCATCATTTATTTATTGGAATTCGTATTTATATAATTAAATTTCTGATGTCTCAAATCCTTGGGCACTGTAACGATATCATTAATATAATGTGTACTGCAAGTTTATCGGGTAAGGTGATATCACTAAACAAGTTAAAAGAGGTTCGTGCCAAGTAAATGGTAGCAAATCTATGCTTTATTCAGTGAAGCATAGTGTAAAAGGAATAATAATTAAAAAATGATTAACCAGATTGTAGTGCGAAGATATATTTACAGCTGAATTGTAAGCAATGGTGACAAAACATAGAGAAAAATCAGTTTGTTGTTG

Ace file of the UniGene sp_v1.1_unigene78

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nicotinate phosphoribosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SC93_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	nicotinate phosphoribosyltransferase-like protein	-	-	87%

Source	InterPros	Term	Type	Identity
Blast2go	Quinolinate phosphoribosyl transferase, C-terminal	IPR002638	-	87%
Blast2go	Nicotinate phosphoribosyltransferase putative	IPR006405	-	87%
Blast2go	Nicotinate phosphoribosyltransferase-related	IPR007229	-	87%
Blast2go	Nicotinate phosphoribosyltransferase-like	IPR015977	-	87%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLD0

Fln msg: atg_distance in limit (1-15): atg_distance = 6, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 524 - 556

Fln protein: MAYAYWKAHKHLDKAVFDLFFRKNPFGGEYTVFAGLEECIRFAATFKFKEEEIEFLRTTLPPTCEEGFFDYLRGINCSDIEIYAIPEGSVVFPKIPLMRVEGPIAVVQLLETPLVNLVNYASLVTTNAARHRRVAGSSKILLEFGLRRAQGPDGGVSASKYCYLGGFDATSNVDAGRRFGIPLRGTHSHAFVSSFMGPDEITDRALPRSDGTGVCEDFVILTQHWLSKLQAADSLKGTFSETNHSELAAFMSYALAFPTKFQALVDTYDVMRSGLPNFCAVSLALNELGYKSQGIRLDSGDLAYLSTEAREFFCAIEKEFRVPDFGKMIITASNDINEETLDALNKQGHEVDAFGIGTHLVTCFAQPALGCVFKLVEINGQPRMKLSEDVSKVSIPCKKQCYRLYGKDGYPLVDIMIGENEVPPKEWERILCRHPFNESKRAYVVPQRVEELYKCYWSGNSGKREPLPTLKEIRERCLRQLAEMRPDHMRELNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ*

Protein Length: 525

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGGAAGGGCCGTCGTGCCCTTGGTGTCACTCTACTTACTGATTTGTATCAGTTCACA_-_ATGGCTTATGCATATTGGAAAGCTCACAAGCATCTGGATAAGGCAGTATTTGACTTATTTTTTCGAAAGAACCCCTTTGGTGGAGAGTACACTGTCTTTGCTGGGTTAGAAGAGTGTATACGGTTTGCTGCAACTTTCAAATTCAAGGAGGAGGAGATTGAATTTTTACGCACAACATTACCGCCAACATGTGAGGAGGGATTCTTTGATTATCTGAGAGGAATCAATTGTTCAGACATTGAGATATATGCAATACCAGAAGGTTCTGTTGTTTTTCCTAAGATACCCCTCATGAGGGTTGAAGGGCCCATTGCAGTTGTCCAGCTTTTGGAAACTCCGCTTGTGAATTTGGTTAATTATGCATCATTGGTTACTACAAATGCTGCAAGGCATAGGCGTGTTGCTGGGAGTTCTAAGATTTTGCTTGAATTTGGACTACGCCGAGCTCAAGGTCCTGATGGAGGGGTCAGTGCATCAAAATATTGCTACCTAGGCGGATTTGATGCAACCAGCAATGTTGATGCTGGGCGGCGATTTGGAATACCACTTCGAGGGACACACTCTCATGCCTTTGTCAGCTCATTCATGGGACCTGATGAGATCACAGACCGGGCACTTCCTAGATCTGATGGTACGGGTGTCTGTGAAGATTTTGTGATTTTGACACAGCACTGGCTAAGCAAATTACAAGCAGCAGATTCTCTTAAAGGGACATTCTCTGAGACCAATCATAGTGAATTGGCAGCCTTTATGTCATATGCTTTGGCTTTTCCAACAAAATTTCAGGCACTTGTGGACACTTATGATGTTATGAGAAGTGGGCTTCCCAACTTTTGTGCAGTTTCTTTGGCGCTTAATGAGTTAGGCTACAAGTCTCAGGGAATTAGGTTGGACTCAGGTGACCTTGCATATTTATCTACTGAGGCACGGGAATTCTTTTGTGCAATTGAAAAGGAATTCCGAGTTCCTGATTTTGGAAAGATGATAATTACTGCGAGCAATGATATCAATGAGGAAACTCTTGATGCATTGAACAAACAGGGGCATGAAGTGGATGCATTTGGGATAGGTACCCATCTCGTTACATGCTTTGCTCAACCTGCCCTCGGTTGTGTTTTTAAATTGGTAGAGATAAATGGTCAGCCTCGCATGAAATTATCTGAAGATGTCTCAAAGGTGTCAATTCCTTGCAAAAAGCAGTGTTATAGGTTGTATGGGAAGGATGGCTATCCTTTGGTGGACATAATGATTGGGGAAAATGAAGTGCCACCTAAAGAATGGGAGCGAATTTTATGCAGGCACCCATTCAATGAATCTAAGCGAGCATATGTGGTGCCACAACGAGTGGAGGAACTATATAAGTGCTACTGGTCAGGAAACTCAGGTAAACGGGAGCCCTTGCCGACACTGAAAGAAATTAGGGAGCGATGTCTAAGACAGTTGGCTGAAATGCGGCCTGACCACATGCGCGAGTTAAACCCGACACCTTACAAGGTAAGCGTGAGTGCAAAGCTTTATGACTTCATTCATTTTCTCTGGTTGAACGAGGCACCTGTTGGAGAATTACAGTGAAAGATCGCATATACCATTACTTATATTTTCAACAATTCTTTTGTTGTTATGAAAATTCTATTGAAATAAATTGAAATAGTTTGCATCATTTATTTATTGGAATTCGTATTTATATAATTAAATTTCTGATGTCTCAAATCCTTGGGCACTGTAACGATATCATTAATATAATGTGTACTGCAAGTTTATCGGGTAAGGTGATATCACTAAACAAGTTAAAAGAGGTTCGTGCCAAGTAAATGGTAGCAAATCTATGCTTTATTCAGTGAAGCATAGTGTAAAAGGAATAATAATTAAAAAATGATTAACCAGATTGTAGTGCGAAGATATATTTACAGCTGAATTGTAAGCAATGGTGACAAAACATAGAGAAAAATCAGTTTGTTGTTG

Fln Alignment:

sp_v1.1_unigene78___LLTDLYQFTMAYAYWKAHKHLDKAVFDLFFRKNPFGGEYTVFAGLEECIRFAATFKFKEEEIEFLRTTLPPTCEEGFFDYLRGINCSDIEIYAIPEGSVVFPKIPLMRVEGPIAVVQLLETPLVNLVNYASLVTTNAARHRRVAGSSKILLEFGLRRAQGPDGGVSASKYCYLGGFDATSNVDAGRRFGIPLRGTHSHAFVSSFMGPDEITDRALPRSDGTGVCEDFVILTQHWLSKLQAADSLKGTFSETNHSELAAFMSYALAFPTKFQALVDTYDVMRSGLPNFCAVSLALNELGYKSQGIRLDSGDLAYLSTEAREFFCAIEKEFRVPDFGKMIITASNDINEETLDALNKQGHEVDAFGIGTHLVTCFAQPALGCVFKLVEINGQPRMKLSEDVSKVSIPCKKQCYRLYGKDGYPLVDIMIGENEVPPKEWERILCRHPFNESKRAYVVPQRVEELYKCYWSGNSGK-REPLPTLKEIRERCLRQLAEMRPDHMRELNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
B8LLD0____________LLTDLYQFTMAYAYWKAGKHLDKAVFDLFFRKNPFRGEYTVFAGLEECIRFAATFKFKEEEIAFLHTILPPTCEEGFFDYLRGINCSDLEIYAIPEGSVVFPKIPLIRVEGPIAVVQLLETPFVNLVNYASLVTTNAARHRRVAGSSKILLEFGLRRAQGPDGGISASKYCYLGGFDATSNVDAGRRFGIPLRGTHSHAFVSSFMGPDEITDRALPRSDGTGVCEDFVILTQHWLSKLQASDSLRGTFSETSHSEMAAFISYALAFPTNFQALVDTYDVMRSGLPNFCAVSLALDELGYKAHGIRLDSGDLAYLSTQAREFFRGIEKEFGVPDFGKMPITASNDINEETLDALNKQGHEVDAFGIGTHLVTCFAQPALGCVFKLVEINGQPRMKLSEDVSKVSIPCKKRCYRLYGKDGYPLVDIMTGENEEPPKERERILCRHPFNESKRAYVVPQRVEELYKCYWSGISGKQRESLPTLNEIRERCLRHLAEMRPDHMRELNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
871		12		87	0.992554
872			12	87	0.992554
875	87		12		0.992554
876			87	12	0.992554
878	12	87			0.992554
879	87	12			0.992554
884		12		87	0.992554
885			87	12	0.992554
887	87			12	0.992554
892		12		87	0.992554
977		25	75		0.996473
980		25		75	0.996473
986		75		25	0.996473
987	75		25		0.996473
989		25	75		0.996473
992	75			25	0.996473
994	25	75			0.996473
995		25		75	0.996473
997		25	75		0.996473
998	25	75			0.996473
1197		80		20	0.995493
1395	86		13		0.999973
1399	86		13		0.999973
1404	86	13			0.999973
1408	86			13	0.999973
1409	86		13		0.999973
1414		13	86		0.999973
1465			89	10	0.999919
1468	89	10			0.999919
1477	88	11			0.999937
1621		10		89	0.999919
1624		89	10		0.999919
1634	80	5		5	0.99967
1741	10		90		0.90298
1742	10			90	0.90298
1746	10	90			0.90298
1748	10			90	0.90298
1749		90		10	0.90298
1751			10	90	0.90298
1909		58	41		1.0
1939			37	62	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain