SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene73

Length: 3098 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene73
GCTTTTACCTGCACTCCCATATCTGGTTGCCCACCGTATGAATTCTTTCGGTCTCAAAGCTCGAGTCTTTTAATATTGGATGCCCATGACCAGAAATTGGCTGCGTTTAAACAAGGAACCGGGTAGGCATTAAATTCCCATCTTCATGCTCTTGCTATTATTTTTCAGGTCCGTTTCCTGACTCCCAACTTTGGCCTTCTTGAGAAGTCACAGAGCTACCTAATCTCTTTTAATTGCCGCCCTGCCCTTTCTACCCACCTGGTCGAGGATTTTCAAGAGAGGAAAAGGAAGGTCCAGTTCGCCTGCCACAGTTTTCTTCTCGAAGGTGAAGAGAATGTCAGGACGACCTGCAATGGAGTTGTTGCGCTCCCATTTATCGAGAGTCAGGATTCCAGAGCCGTCTAATCGTATATACAAGGAGGAGTGCTGCGTATCTTTTGATACTCCGAAGTCAGAGGGAGGACTTTTCATCGACTTAAATTCATTTTTAGCATTTGGAAAGGACTCGGTGTTTTGGAACTACAAGAAAAGTGGAAATCCAGTTTACTTGCACATCAAGTCAACTAAAAAGCCTGTCAGTGAAGATAGGCCTTTCAAGAAGCCAACGCTTCTAGCAATAGGTATTGATGGGGGCTTTGAAAACCGAGAGCAGGAGTTTGAAGATTCATATAAGATTGTCATATTGCCTGAAAATGTTACACTTCCATTCCCTTCGGTAGAACTGCCAGAAAAGGTCAGATTATCAGTTGATGGTGTTTTGTCAGCTGTGGGCGCTGAGCGCAAAGAACAGGTTGCAGCTTGGGTAGATGATAAGAAGCAAGTTAGTGCATATGCAATGAACTTGCAACAGATTGATAATGGTGTCACAGTTCCTCCGTCTGGTTGGAAGTGTGCAAAGTGTGACAAGGTCGAAAATTTGTGGCTCAATCTTACAGATGGCATGATTCTTTGTGGGAGAAAGAATTGGGATGGAACTGGAGGCAATGATCATGCTGTTGAGCATTACAAAGAAACGAAGTACCCTTTAGCAGTAAAGCTTGGTACCGTCACGGCAGATTTAGAAACTGCAGATGTCTATTCTTATGCTGAGGATGAAACCGTTGAAGATCCCCTGTTAGCTCAACATTTATCATTTTTTGGTATTGACTTCTCATCTTTGAAAAAGACGGAGTTGACTACCGCTGAAAAAGAACTGGATCAGAATACAAACTTTGATTGGAATCGTATTCAGGAAAGTGGCAAGGAATCAGAGCCTCTATTTGGGCCTGGTTATACAGGACTTATCAATCTTGGAAACAGCTGTTACTTGGCCTCTATCATGCAAACAGTATTCTCCACAAGAGATTTTAGTTTACGTTATTTTGGAACTCAAAAATTGGATGAAGCTTTTGAAGGGGCTCCTGCAGATCCAACTGTTGACTTGAATATGCAGCTGGTGAAACTTGGACATGGCCTACTCTCTGGCAAGTATTCAAATCCTGTTAAAGAGGCTTATGATGCAGATGACTGTGAAAATGCAACCTTGAAACCTAGGCAAGAAGGCATACCACCTCGTATGTTCAAGGCACTTATTGGCACTGGTCATCCTGAGTTCTCTAGTACTAGACAACAGGATGCACTGGAGTTCTTTCAACATTTACTTGACCATGTTGAGCGAAGCAATGCGGGAAAACCTCAATCGGATCCTTCTAGATGTTTTAAGTTCTGCGTTGAAGAGCGAATTCTTTGCTCATCTGGGAAAGTTTCATACAATAGAAGAATTGACAATGTTCTTTCTCTGAATATTCCTTTGCATGCCGCTATCAATAAGGATGAGGTAACAGCATTTGAGAAGAAAAAAGCAGAGAAAGAATTAGCAGGAGAGAAATTTAACAGTGAGGAAATTGTTCGTCCAAGAGTACCATTATCAGCATGTATAGCGAGTTTCTCAGCACCAGAAGAGGTGCATGATTTTTATAGCACTGCACTGAATGATAAGACGACAGCAGTTAAAACTGGTGGTCTAGCAACATTTCCTGATTATTTGGTACTACATATGCGCAAGTTTGTCATGGAGGCTGGTTGGGTTCCTAAAAAACTTGATGTTTTTATTGATGTTCCTGACACAATAGATATCAGCCATATGCATAGCAAAGGTTTGCAACCAGGAGAGGAGCTACTACCCGAAAATGTTCAGAGTGGGCCTTCAGCCAGTGAACCTATTGTGTCACAGCTTGCAGCCATGGGTTTTCCTCGTCTTTATTGTGAAAAAGCTGCAATCAATACCTCAAATACAGGAATTGAGGATGCAATGAGTTGGCTTCTAAGCCACATGGAGGACCCAGATATTAATTCACCTATATCCACTGGAAGTAAAAATAATACAAAGCTGATTCCACCCGTTGATGAAGAACTTGTGGATACTCTTGTCGGATTTGGATTTGAAGCAGATGTTGCTCGAAAAGCATTAAGAGCCACAAGTGGTGATATTGAGAGAGCAGCTGAGTGGATCTTTTCTCGGCCAGAAGATTCTGTTGGCATGGACTTAGACGTCAATTCTAACAGTGCTCCTAGCACATCTGACCAGGCATTACCAGATGGAGAAGGAAAATACAAGCTTATGGCATTTGTAAGTCACATGGGCACGTCTACTCAGTGTGGACACTACGTAGCACATATACTTAAAGAAGGAAGATGGGTCATTTTCAATGACTGTAAAGTCGCAGTTTCATCTGAACCCCCCAAGGATATGGGATACCTGTACTTTTTTGAACGTGTTCATGGACATGCTGGAACAGCTTAGGTTGAGAACAACACATTTCGTTTTCTTAGTCAGTGTGCATTTGGAAAGAGTGAGGGTTTGCCTTTCCCAACACCTTGAAGCAGTCACGGCGGAATCTTGTGTACATGAAGAGCCAATTATTTTTTTTTTGGGATTTCATTGTGACGAGCTACTTCTCTTACATTACGGGTGATTTTCAATTGGCAATTATAAAGTCTTGGGAACCAGTCTAAATTTCATTCAATTAATGATCACTATTTGGTAGCAGTTCGAGTAGAGTGTTAATTTCTATGTATTTTTCAGGGTAAGCAGTCCGAGAAAGTGTCAAGTCCTATGA

Ace file of the UniGene sp_v1.1_unigene73 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=E0CSV0_VITVI	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	ubiquitin-specific protease 14	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	78%
Blast2go	protein deubiquitination	GO:0016579	Biological Process	78%
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7V4

Fln msg: your sequence is longer than subject: 816 - 219

Fln protein: MSGRPAMELLRSHLSRVRIPEPSNRIYKEECCVSFDTPKSEGGLFIDLNSFLAFGKDSVFWNYKKSGNPVYLHIKSTKKPVSEDRPFKKPTLLAIGIDGGFENREQEFEDSYKIVILPENVTLPFPSVELPEKVRLSVDGVLSAVGAERKEQVAAWVDDKKQVSAYAMNLQQIDNGVTVPPSGWKCAKCDKVENLWLNLTDGMILCGRKNWDGTGGNDHAVEHYKETKYPLAVKLGTVTADLETADVYSYAEDETVEDPLLAQHLSFFGIDFSSLKKTELTTAEKELDQNTNFDWNRIQESGKESEPLFGPGYTGLINLGNSCYLASIMQTVFSTRDFSLRYFGTQKLDEAFEGAPADPTVDLNMQLVKLGHGLLSGKYSNPVKEAYDADDCENATLKPRQEGIPPRMFKALIGTGHPEFSSTRQQDALEFFQHLLDHVERSNAGKPQSDPSRCFKFCVEERILCSSGKVSYNRRIDNVLSLNIPLHAAINKDEVTAFEKKKAEKELAGEKFNSEEIVRPRVPLSACIASFSAPEEVHDFYSTALNDKTTAVKTGGLATFPDYLVLHMRKFVMEAGWVPKKLDVFIDVPDTIDISHMHSKGLQPGEELLPENVQSGPSASEPIVSQLAAMGFPRLYCEKAAINTSNTGIEDAMSWLLSHMEDPDINSPISTGSKNNTKLIPPVDEELVDTLVGFGFEADVARKALRATSGDIERAAEWIFSRPEDSVGMDLDVNSNSAPSTSDQALPDGEGKYKLMAFVSHMGTSTQCGHYVAHILKEGRWVIFNDCKVAVSSEPPKDMGYLYFFERVHGHAGTA*

Protein Length: 817

Fln nts: GCTTTTACCTGCACTCCCATATCTGGTTGCCCACCGTATGAATTCTTTCGGTCTCAAAGCTCGAGTCTTTTAATATTGGATGCCCATGACCAGAAATTGGCTGCGTTTAAACAAGGAACCGGGTAGGCATTAAATTCCCATCTTCATGCTCTTGCTATTATTTTTCAGGTCCGTTTCCTGACTCCCAACTTTGGCCTTCTTGAGAAGTCACAGAGCTACCTAATCTCTTTTAATTGCCGCCCTGCCCTTTCTACCCACCTGGTCGAGGATTTTCAAGAGAGGAAAAGGAAGGTCCAGTTCGCCTGCCACAGTTTTCTTCTCGAAGGTGAAGAGA_-_ATGTCAGGACGACCTGCAATGGAGTTGTTGCGCTCCCATTTATCGAGAGTCAGGATTCCAGAGCCGTCTAATCGTATATACAAGGAGGAGTGCTGCGTATCTTTTGATACTCCGAAGTCAGAGGGAGGACTTTTCATCGACTTAAATTCATTTTTAGCATTTGGAAAGGACTCGGTGTTTTGGAACTACAAGAAAAGTGGAAATCCAGTTTACTTGCACATCAAGTCAACTAAAAAGCCTGTCAGTGAAGATAGGCCTTTCAAGAAGCCAACGCTTCTAGCAATAGGTATTGATGGGGGCTTTGAAAACCGAGAGCAGGAGTTTGAAGATTCATATAAGATTGTCATATTGCCTGAAAATGTTACACTTCCATTCCCTTCGGTAGAACTGCCAGAAAAGGTCAGATTATCAGTTGATGGTGTTTTGTCAGCTGTGGGCGCTGAGCGCAAAGAACAGGTTGCAGCTTGGGTAGATGATAAGAAGCAAGTTAGTGCATATGCAATGAACTTGCAACAGATTGATAATGGTGTCACAGTTCCTCCGTCTGGTTGGAAGTGTGCAAAGTGTGACAAGGTCGAAAATTTGTGGCTCAATCTTACAGATGGCATGATTCTTTGTGGGAGAAAGAATTGGGATGGAACTGGAGGCAATGATCATGCTGTTGAGCATTACAAAGAAACGAAGTACCCTTTAGCAGTAAAGCTTGGTACCGTCACGGCAGATTTAGAAACTGCAGATGTCTATTCTTATGCTGAGGATGAAACCGTTGAAGATCCCCTGTTAGCTCAACATTTATCATTTTTTGGTATTGACTTCTCATCTTTGAAAAAGACGGAGTTGACTACCGCTGAAAAAGAACTGGATCAGAATACAAACTTTGATTGGAATCGTATTCAGGAAAGTGGCAAGGAATCAGAGCCTCTATTTGGGCCTGGTTATACAGGACTTATCAATCTTGGAAACAGCTGTTACTTGGCCTCTATCATGCAAACAGTATTCTCCACAAGAGATTTTAGTTTACGTTATTTTGGAACTCAAAAATTGGATGAAGCTTTTGAAGGGGCTCCTGCAGATCCAACTGTTGACTTGAATATGCAGCTGGTGAAACTTGGACATGGCCTACTCTCTGGCAAGTATTCAAATCCTGTTAAAGAGGCTTATGATGCAGATGACTGTGAAAATGCAACCTTGAAACCTAGGCAAGAAGGCATACCACCTCGTATGTTCAAGGCACTTATTGGCACTGGTCATCCTGAGTTCTCTAGTACTAGACAACAGGATGCACTGGAGTTCTTTCAACATTTACTTGACCATGTTGAGCGAAGCAATGCGGGAAAACCTCAATCGGATCCTTCTAGATGTTTTAAGTTCTGCGTTGAAGAGCGAATTCTTTGCTCATCTGGGAAAGTTTCATACAATAGAAGAATTGACAATGTTCTTTCTCTGAATATTCCTTTGCATGCCGCTATCAATAAGGATGAGGTAACAGCATTTGAGAAGAAAAAAGCAGAGAAAGAATTAGCAGGAGAGAAATTTAACAGTGAGGAAATTGTTCGTCCAAGAGTACCATTATCAGCATGTATAGCGAGTTTCTCAGCACCAGAAGAGGTGCATGATTTTTATAGCACTGCACTGAATGATAAGACGACAGCAGTTAAAACTGGTGGTCTAGCAACATTTCCTGATTATTTGGTACTACATATGCGCAAGTTTGTCATGGAGGCTGGTTGGGTTCCTAAAAAACTTGATGTTTTTATTGATGTTCCTGACACAATAGATATCAGCCATATGCATAGCAAAGGTTTGCAACCAGGAGAGGAGCTACTACCCGAAAATGTTCAGAGTGGGCCTTCAGCCAGTGAACCTATTGTGTCACAGCTTGCAGCCATGGGTTTTCCTCGTCTTTATTGTGAAAAAGCTGCAATCAATACCTCAAATACAGGAATTGAGGATGCAATGAGTTGGCTTCTAAGCCACATGGAGGACCCAGATATTAATTCACCTATATCCACTGGAAGTAAAAATAATACAAAGCTGATTCCACCCGTTGATGAAGAACTTGTGGATACTCTTGTCGGATTTGGATTTGAAGCAGATGTTGCTCGAAAAGCATTAAGAGCCACAAGTGGTGATATTGAGAGAGCAGCTGAGTGGATCTTTTCTCGGCCAGAAGATTCTGTTGGCATGGACTTAGACGTCAATTCTAACAGTGCTCCTAGCACATCTGACCAGGCATTACCAGATGGAGAAGGAAAATACAAGCTTATGGCATTTGTAAGTCACATGGGCACGTCTACTCAGTGTGGACACTACGTAGCACATATACTTAAAGAAGGAAGATGGGTCATTTTCAATGACTGTAAAGTCGCAGTTTCATCTGAACCCCCCAAGGATATGGGATACCTGTACTTTTTTGAACGTGTTCATGGACATGCTGGAACAGCTTAG___GTTGAGAACAACACATTTCGTTTTCTTAGTCAGTGTGCATTTGGAAAGAGTGAGGGTTTGCCTTTCCCAACACCTTGAAGCAGTCACGGCGGAATCTTGTGTACATGAAGAGCCAATTATTTTTTTTTTGGGATTTCATTGTGACGAGCTACTTCTCTTACATTACGGGTGATTTTCAATTGGCAATTATAAAGTCTTGGGAACCAGTCTAAATTTCATTCAATTAATGATCACTATTTGGTAGCAGTTCGAGTAGAGTGTTAATTTCTATGTATTTTTCAGGGTAAGCAGTCCGAGAAAGTGTCAAGTCCTATGA

Fln Alignment:

sp_v1.1_unigene73___MHSKGLQPGEELLPENVQSGPSASEPIVSQLAAMGFPRLYCEKAAINTSNTGIEDAMSWLLSHMEDPDINSPISTGSKNNTKLIPPVDEELVDTLVGFGFEADVARKALRATSGDIERAAEWIFSRPEDSVGMDLDVNSNSAPSTSDQALPDGEGKYKLMAFVSHMGTSTQCGHYVAHILKEGRWVIFNDCKVAVSSEPPKDMGYLYFFERVHGHAGTA
D5A7V4____________MHSKGLQPGEELLPENVQRGPSASEAIVSQLAAMGFPRLHCEKAAINTSNTGVEDAMNWLLSHTEDPDIDTPISTGRQNDTKLKPPVDEGLVDTLVGFGFEADVARKALRATGGIIERAAEWIFSQPQDSIGMDLDASSNSAPSTSDQALPNGEGKYKLMAFVSHMGTSTQCGHYVAHILKEGRWVIFNDCKVAASCEPPKDMGYLYFFERIHGDAGRA

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
1408		10		90	0.90298
1410		10		90	0.90298
1412			90	10	0.90298
1447		83	16		0.994512
1825		33		66	0.997452
1867		33		66	0.997452
1874	85			14	0.993533
1957	83		16		0.994512
2053		11	88		0.923564
2055		44		55	1.0
2198		11		88	0.923564
2262		12		87	0.992554
2270			12	87	0.992554
2279	80		20		0.995493
2281		20		80	0.995493
2282	25			75	0.996473
2283	25		75		0.996473
2284		75	25		0.996473
2285			25	75	0.996473
2288	25			75	0.996473
2289		25		75	0.996473
2290	75		25		0.996473
2291	25			75	0.996473
2293	75		25		0.996473
2420	66	33			0.997452
2421		33		66	0.997452
2422		33	66		0.997452
2424		66		33	0.997452
2668		33		66	0.997452
2673	80		20		0.995493
2676	80	20			0.995493
2677		80		20	0.995493
2685	20	80			0.995493
2686		20		80	0.995493
2689		20		80	0.995493
2690	80		20		0.995493
2691	20			80	0.995493
2752			80	20	0.995493
2753		80		20	0.995493
2754	80		20		0.995493
2755	20		80		0.995493
2760	20			80	0.995493
2762	20	80			0.995493
2765	80	20			0.995493
2768	20			80	0.995493
2769			20	80	0.995493
2770		80	20		0.995493
2773	20			80	0.995493
2774		25		75	0.996473
2775		75	25		0.996473
2778		75	25		0.996473
2910		66		33	0.997452
2942	66			33	0.997452
2979	33		66		0.997452
2995	66			33	0.997452
2997	66	33			0.997452
3032	66	33			0.997452
3033	66	33			0.997452
3034	66	33			0.997452
3037			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain