SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64

Length: 3079 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene64
CGTCGTGACCTTGGCTGTGGGGCCTTTTGCCGACGGTGGGCATTTAAACCTATTGACTTCCCCTTTTGCCGACGGCTGGTCTCGGTCTTTGACCAGACAACGGTTGCGCCTTCCGTTTTGCAACAACCCAGAGTTCAGTTTTCGAACCTCGCGGCCATTGTATTCCTGCAAGTGGATGATTTGTAATCAGTGAGCGCCCAGGGATTGTATTTGCAGTTTCTGTTTGAAGTATCAATCATTTCCTCATTTACATTGGTAGGCAAGTACAGACTGCAGCTGTGGTTAAACAATCAGCATGAAAAAGGGCGCGAAGGAAACGCAGCTAAATAAAGTAGATGTAACTAGAGAATGGGTGGTCAGAGGTCTCACTTCTCCTAGGTCTAAGGGGGCTGAAGGAAATGATAATTCTATGGTAAAGGACTTAGCTGCACAGGTAGAGGACTACTCACAATCTGAGATTGAGAATTTTCAAGGAGCAAAGCCTGAATCACTACTATTTAGTGAGTTTATAAATAGAAACCCAGAAGGAGCACATGGAAGGCATGGAAAGAAGCCGTTGAGAGATAATGGAGTTAAAAATCAAGTTTGCTTCACCAACATAAAGAATGGCACTAGATCTTTAAGGTCTGATGCAGTCAATCAAGCTGTCCCAGACATTTCCAGTTCAGGCCAATGCACTGCCTTCTCTAATGAACATAAGTCAGGCGATGCTTCTGAGAGGGCGCTTGCAGCTAAACCAAGGAATGCTACAGAAATTGAAGTTATATCTGAGACTGAAGTATTGATGCAGGACTGCTCAGTAGTTGGAAGCAGTGACAACTCAAAATTTTGCAGAGAAGAGGAATATAAGAATGGAGATCTATGTTCCATTATAAAACGATTGGAAAAACTTTGTTTGGCCATCAATGAACCTGAACTGTCTGAATCACAGGTTGAATTGAATGATCAGGAACAAGAAGATGAGGTGCTGGCATTGAAGGCAATTTATGAGGATGATGTGTTTGCTGTTGAAAGAGAAGATGGCAGCCCTCGTGCATTAAAGATGTCTATACATGTTGAAATTCCTGAGAATATTGCTATTACTGTGAGGCTGCCATCGGCTTCCAGTAAATGTAAACTCAGCGGAAACAATAGCAGGTCTTCTTCAAAAGATGTTCTAGTGGGAAATGTTTACACATTCAATGTTCAGCACCTTCTTCCTATTGCATTGACATGTGTTCTGCCTAAATCATATCCGTGCTACATGCCCCCACAATTTACGATTTTGGCCTACTGGTTGGACTCTGATAGTATTTCTAAGCTCTGCAACAGCTTAGACAGCATTTGGGCTGGAGACTCGGGACAAGTTGTACTATATAAATGGGCAGAATGGCTCCGCAGTTCATGTCTTTCACACCTGGGATTTCAGCATGAGATATTGCTAGATCCATTCAATGTGCAGAGCAAAACAGATTGGCGAGCGATTTCTGTGTTTTCATCTCCAGATGTTGATATTCCTCGCCTGATGCAATACAATGATGAAAAAAAACACTATTCTGTAGCACTTTGCATGTGTGCCTTATATGCTTCAATGAATATCCAGGGACTGAGTTTGTCAAATTACGATGCCAACATATCTTCTGCTGGAAGTGTATGGAAACATATTCACATGTTCATGTGAAGGATGGTACCGTCAACAAGCTCAATTGTCCAGATCCTAAGTGTGAAGTTTCTATTCCACCTAGCCTACTGAAGAAACTTCTTGGGGATGAGGCATTTGAAAGATGGGAATCCTTGCTGTTGCAGAAGACATTAGATTCAATGATGGATGTCGTATACTGCCCTCGCTGTGAGTCAGTATGTTTGGAGGATGAAGATCATCATGCACAATGTGCCAAGTGCTTCTACAGTTTTTGTAGTCTCTGCAGAGAGCGACGACATGTAGGGCAAACTTGTATGACCCCAGAGATGCGGCTTTGTATTTTGCAGGAGCGCCAAAATTCAGTTCAGATGGGCTCCGAGCAGAGAAAAAGGGAGCATGACTTAATTAATGAACTGCTTAGTATGAAGCAGATACTACGTGATGCAAAACAATGTCCATCATGCAAGATGGCCATCTCCAAAACAGAGGGCTGCAACAAGATGACTTGCTATAATTGTGGTCAGTATTTTTGTTATAGGTGCAGCAAAGCAGTGGATGGATATGACCACTTCAGTGGTGGAAATTGCATATTATTTGAGGAACAAGATATTCAAAACTGGGAGAGGGCTATGAATGATCGCCAACTTTTACAGCAAGCTCAAGTGGAACTTTGGCCTCATCTTGGTCGACCATGTCCAAACTGTGGTCAACCAAATCCAAAGCTAGGAAATAACAATCACATATTCTGCTGGTCTTGCCAAAACCATTACTGCGCTTTGTGTCGTAAAGTTGTGCGACGCAGCTCTGAACATTACGGACCACGAGGGTGTAAACAGCATACGGCAGATTGACAAGTATAAATATAGTCCTGTGTGAAGAAGTAAAGTCTTTCACTTGTCAATTTTGGCTTTTCAGGCACAGGGGCATCCATATATTTGTCTTGTTAGGCTATGGCATTGGTCTTCCTGGCATTCTCTCATTGCCTAGAGGAATCGTGGCATTTTTCAAGTGATCTCCAGAAATTTAAATGTTGGTCATTGGAGCCACCATGCTCTCTGCTGGAAAGCTCAATGTTTCAATAAAATGAGTGGTCTGTCAGAAGTCAAGAGTTACTGCCATTCTGTTTGCTATTATGCCCATTCTTTCCGATTTTTACATATATCATCCTTTCTGCCTATATTTTCAATTTGAATGAGAATAATGATTTTGTAGCAGTCGGTCATGCTATTCATCTCAAGATATCTTTCTTCCAGCAAAAGATTTGTCATTTGTCATTATAACAACAGAGTTATTGCCCTCAGAAAAGAGACATCACTGTTTCTTGTGGATGACGCTGTGTTTTCCTAAATTGGTGATACCCTATATATGTATTCTGTGTTACAGTCACAGGGAATAGATTGTAGAATTTATGTGCAATTCACAAGTCATATGAGAAGTTATAATTTTTGATATAATATG

Ace file of the UniGene sp_v1.1_unigene64

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NHL8; NHL8; protein binding / zinc ion binding; K11971 E3 ubiquitin-protein ligase RNF14 [EC:6.3.2.19]	-	-	61%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	39%
Blast2go	ring finger	-	-	70%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, C6HC-type	IPR002867	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9MU50

Fln msg: Separated hits, possible frame ERROR between 1531 and 1534, your sequence is longer than subject: 726 - 642

Fln protein: MKKGAKETQLNKVDVTREWVVRGLTSPRSKGAEGNDNSMVKDLAAQVEDYSQSEIENFQGAKPESLLFSEFINRNPEGAHGRHGKKPLRDNGVKNQVCFTNIKNGTRSLRSDAVNQAVPDISSSGQCTAFSNEHKSGDASERALAAKPRNATEIEVISETEVLMQDCSVVGSSDNSKFCREEEYKNGDLCSIIKRLEKLCLAINEPELSESQVELNDQEQEDEVLALKAIYEDDVFAVEREDGSPRALKMSIHVEIPENIAITVRLPSASSKCKLSGNNSRSSSKDVLVGNVYTFNVQHLLPIALTCVLPKSYPCYMPPQFTILAYWLDSDSISKLCNSLDSIWAGDSGQVVLYKWAEWLRSSCLSHLGFQHEILLDPFNVQSKTDWRAISVFSSPDVDIPRLMQYNDEKKxxFCSTLHVCLICFNEYPGTEFVKLRCQHIFCWKCMETYSHVHVKDGTVNKLNCPDPKCEVSIPPSLLKKLLGDEAFERWESLLLQKTLDSMMDVVYCPRCESVCLEDEDHHAQCAKCFYSFCSLCRERRHVGQTCMTPEMRLCILQERQNSVQMGSEQRKREHDLINELLSMKQILRDAKQCPSCKMAISKTEGCNKMTCYNCGQYFCYRCSKAVDGYDHFSGGNCILFEEQDIQNWERAMNDRQLLQQAQVELWPHLGRPCPNCGQPNPKLGNNNHIFCWSCQNHYCALCRKVVRRSSEHYGPRGCKQHTAD*

Protein Length: 727

Fln nts: CGTCGTGACCTTGGCTGTGGGGCCTTTTGCCGACGGTGGGCATTTAAACCTATTGACTTCCCCTTTTGCCGACGGCTGGTCTCGGTCTTTGACCAGACAACGGTTGCGCCTTCCGTTTTGCAACAACCCAGAGTTCAGTTTTCGAACCTCGCGGCCATTGTATTCCTGCAAGTGGATGATTTGTAATCAGTGAGCGCCCAGGGATTGTATTTGCAGTTTCTGTTTGAAGTATCAATCATTTCCTCATTTACATTGGTAGGCAAGTACAGACTGCAGCTGTGGTTAAACAATCAGC_-_ATGAAAAAGGGCGCGAAGGAAACGCAGCTAAATAAAGTAGATGTAACTAGAGAATGGGTGGTCAGAGGTCTCACTTCTCCTAGGTCTAAGGGGGCTGAAGGAAATGATAATTCTATGGTAAAGGACTTAGCTGCACAGGTAGAGGACTACTCACAATCTGAGATTGAGAATTTTCAAGGAGCAAAGCCTGAATCACTACTATTTAGTGAGTTTATAAATAGAAACCCAGAAGGAGCACATGGAAGGCATGGAAAGAAGCCGTTGAGAGATAATGGAGTTAAAAATCAAGTTTGCTTCACCAACATAAAGAATGGCACTAGATCTTTAAGGTCTGATGCAGTCAATCAAGCTGTCCCAGACATTTCCAGTTCAGGCCAATGCACTGCCTTCTCTAATGAACATAAGTCAGGCGATGCTTCTGAGAGGGCGCTTGCAGCTAAACCAAGGAATGCTACAGAAATTGAAGTTATATCTGAGACTGAAGTATTGATGCAGGACTGCTCAGTAGTTGGAAGCAGTGACAACTCAAAATTTTGCAGAGAAGAGGAATATAAGAATGGAGATCTATGTTCCATTATAAAACGATTGGAAAAACTTTGTTTGGCCATCAATGAACCTGAACTGTCTGAATCACAGGTTGAATTGAATGATCAGGAACAAGAAGATGAGGTGCTGGCATTGAAGGCAATTTATGAGGATGATGTGTTTGCTGTTGAAAGAGAAGATGGCAGCCCTCGTGCATTAAAGATGTCTATACATGTTGAAATTCCTGAGAATATTGCTATTACTGTGAGGCTGCCATCGGCTTCCAGTAAATGTAAACTCAGCGGAAACAATAGCAGGTCTTCTTCAAAAGATGTTCTAGTGGGAAATGTTTACACATTCAATGTTCAGCACCTTCTTCCTATTGCATTGACATGTGTTCTGCCTAAATCATATCCGTGCTACATGCCCCCACAATTTACGATTTTGGCCTACTGGTTGGACTCTGATAGTATTTCTAAGCTCTGCAACAGCTTAGACAGCATTTGGGCTGGAGACTCGGGACAAGTTGTACTATATAAATGGGCAGAATGGCTCCGCAGTTCATGTCTTTCACACCTGGGATTTCAGCATGAGATATTGCTAGATCCATTCAATGTGCAGAGCAAAACAGATTGGCGAGCGATTTCTGTGTTTTCATCTCCAGATGTTGATATTCCTCGCCTGATGCAATACAATGATGAAAAAAAACAxxxATTCTGTAGCACTTTGCATGTGTGCCTTATATGCTTCAATGAATATCCAGGGACTGAGTTTGTCAAATTACGATGCCAACATATCTTCTGCTGGAAGTGTATGGAAACATATTCACATGTTCATGTGAAGGATGGTACCGTCAACAAGCTCAATTGTCCAGATCCTAAGTGTGAAGTTTCTATTCCACCTAGCCTACTGAAGAAACTTCTTGGGGATGAGGCATTTGAAAGATGGGAATCCTTGCTGTTGCAGAAGACATTAGATTCAATGATGGATGTCGTATACTGCCCTCGCTGTGAGTCAGTATGTTTGGAGGATGAAGATCATCATGCACAATGTGCCAAGTGCTTCTACAGTTTTTGTAGTCTCTGCAGAGAGCGACGACATGTAGGGCAAACTTGTATGACCCCAGAGATGCGGCTTTGTATTTTGCAGGAGCGCCAAAATTCAGTTCAGATGGGCTCCGAGCAGAGAAAAAGGGAGCATGACTTAATTAATGAACTGCTTAGTATGAAGCAGATACTACGTGATGCAAAACAATGTCCATCATGCAAGATGGCCATCTCCAAAACAGAGGGCTGCAACAAGATGACTTGCTATAATTGTGGTCAGTATTTTTGTTATAGGTGCAGCAAAGCAGTGGATGGATATGACCACTTCAGTGGTGGAAATTGCATATTATTTGAGGAACAAGATATTCAAAACTGGGAGAGGGCTATGAATGATCGCCAACTTTTACAGCAAGCTCAAGTGGAACTTTGGCCTCATCTTGGTCGACCATGTCCAAACTGTGGTCAACCAAATCCAAAGCTAGGAAATAACAATCACATATTCTGCTGGTCTTGCCAAAACCATTACTGCGCTTTGTGTCGTAAAGTTGTGCGACGCAGCTCTGAACATTACGGACCACGAGGGTGTAAACAGCATACGGCAGATTGA___CAAGTATAAATATAGTCCTGTGTGAAGAAGTAAAGTCTTTCACTTGTCAATTTTGGCTTTTCAGGCACAGGGGCATCCATATATTTGTCTTGTTAGGCTATGGCATTGGTCTTCCTGGCATTCTCTCATTGCCTAGAGGAATCGTGGCATTTTTCAAGTGATCTCCAGAAATTTAAATGTTGGTCATTGGAGCCACCATGCTCTCTGCTGGAAAGCTCAATGTTTCAATAAAATGAGTGGTCTGTCAGAAGTCAAGAGTTACTGCCATTCTGTTTGCTATTATGCCCATTCTTTCCGATTTTTACATATATCATCCTTTCTGCCTATATTTTCAATTTGAATGAGAATAATGATTTTGTAGCAGTCGGTCATGCTATTCATCTCAAGATATCTTTCTTCCAGCAAAAGATTTGTCATTTGTCATTATAACAACAGAGTTATTGCCCTCAGAAAAGAGACATCACTGTTTCTTGTGGATGACGCTGTGTTTTCCTAAATTGGTGATACCCTATATATGTATTCTGTGTTACAGTCACAGGGAATAGATTGTAGAATTTATGTGCAATTCACAAGTCATATGAGAAGTTATAATTTTTGATATAATATG

Fln Alignment:

sp_v1.1_unigene64___SDAVNQAVPDISSSGQCTAFSNEHKSGDASERALAAK----PRNATEIEVISETEVLMQDCSV----VGSSDNSKFCREEEYKNGD-LCSIIKRLEKLCLAINEPELSESQVELNDQEQEDEVLALKAIYEDDVFAVEREDGSPRALKMSIHVEIPENIAITVRLPSASSKCKLSGNNSRSSSKDVLVGNVYTFNVQHLLPIALTCVLPKSYPCYMPPQFTILAYWLDSDSISKLCNSLDSIWAGDSGQVVLYKWAEWLRSSCLSHLGFQHEILLDPFNVQSKTDWRAISVFSSPDVDIPRLMQYNDEKKHxFCSTLHVCLICFNEYPGTEFVKLRCQHIFCWKCMETYSHVHVKDGTVNKLNCPDPKCEVSIPPSLLKKLLGDEAFERWESLLLQKTLDSMMDVVYCPRCESVCLEDEDHHAQCAKCFYSFCSLCRERRHVGQTCMTPEMRLCILQERQNSVQMGSEQRKREHDLINELLSMKQILRDAKQCPSCKMAISKTEGCNKMTCYNCGQYFCYRCSKAVDGYDHFSGGNCILFEEQDIQNWERAMNDRQLLQQAQVELWPHLGRPCPNCGQPNPKLGNNNHIFCWSCQNHYCALCRKVVRRSSEHYGPRGCKQHT
B9MU50____________SNLESPSVPSASSQQQYIKKS-EHKPSNSQVVSLNSPKSDPPSSSTEVGASSFGEKVNENMEKHLHETKKEEIEEKKEESEPDNGNGVDGVVTRLEEFFLGVEEPELSEEQLRINDQLQEDELLAMESIYGDNTFILERQRGL-RSFQIHIHIEVPAEFTVTAKLYS------LGDCNGKSGSSDEFS---YSFEVQYLPPIVLTCLLPKSYPSHLPPYFTISVQWLDSTSISHLCSMLDSIWTEQPGLEVIYQWADWLQNYSLSFLGIDKDIILGPCVTKHKKDRRAISGSVSLEVDVPSLRSYNAEQCHxFCKNLHECCICCDD----DFIRLPCQHFFCPKCMKRYSDIHVAEGTVNKLQCPDAKCGVMVPPGLLKRLLGDEEYERWESLMLQKTLESMSDVSYCPRCETPCIEDEEQHAQCSKCLYSFCTLCRERRHLGEVCMTPEMKLQVLEERQNSSHLKDGQKHREREMINELLSVKEILRDAKQCPSCKMAISRTEGCNKMVCKNCEQFFCYRCNKGIDGYDHFKDGQCELFPQEEIQQWEERMNPRRVVAEVHAELFPDHVNACPNCGQFNVKVGNNNHILCWSCQMHYCYLCRKIVRRGSQHFGPKGCKQHT

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1089		14		85	0.993533
1224		11		88	0.923564
1226		88		11	0.923564
1228			11	88	0.923564
1229	88			11	0.923564
1230	88		11		0.923564
1232		11		88	0.923564
1234	88			11	0.923564
1236	88		11		0.923564
1237			11	88	0.923564
1239		88		11	0.923564
1242	11		88		0.923564
1245	88	11			0.923564
1246	11	88			0.923564
1487			83	16	0.994512
1504		60	40		1.0
1735	75			25	0.996473
1739	75	25			0.996473
1742	75			25	0.996473
1743	75		25		0.996473
1745		75	25		0.996473
1747			25	75	0.996473
1748	25	75			0.996473
1749		25		75	0.996473
1750	25			75	0.996473
1753		25	75		0.996473
1754		25	75		0.996473
1761	25		75		0.996473
1765			25	75	0.996473
1766		25		75	0.996473
2003	80		20		0.995493
2269		10		90	0.90298
2359	83		16		0.999991
3062			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain