SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63

Length: 2530 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene63
ATGGGACGTCCCTTCTCGCGTTTCTCGATGAGCATTTATGTTGTAGCTCTCAAACTCTGTTCGCCCTACGAACACACGTATAACCCATTCAAATTATTGTCGTTGGTCCCCGTACGCCGGGGAAATCCAACACAACTCCGGAGGCATTCAAATTGCCTGTTCCCTCGTTGAGATTTTGGTTTGCCTATGCAACATGCGTCAAAATAACTGTCAATTCGGCATTCAACCTGCCATACTTCTGTGACCGTCGCACCAGCACACCACTGTGGAGAAATTTGTGTCTGACCCGTAATGAGTTTCATTAGAATAATTGAATTGCATTCGCCATTTTCTGTTTAGAGATTTTGAGTCAAATCATTCAGTGCCTGTATTTTCTGCGAAAAAAATTGAAACGCAGACTCAAATTCGAGGGTTTCAAAAGTTTCGCGCCCATAGGATCTAGGGCCTTATACCCGACGATCCAGGGCTCCGCCGATCTTGTACCATCCATTAGGAGGGAATCTTGTTTTGAATATGAAGCCGAGGGATCTCTTGTGTTTTCTCGTGGCAGCGGTGTATATTTTGGTGCGATTAGGGTTTGTAGTCGAGAGTGTCCGTTTGGGCGATGGCGGTGTGAAGGTCCAGGTGCCGCGATCGCAGCAGACTATGGAAGCGTATGCGACTCTTCTTTATGGAGATGAATTTCTACTGGGAGTTCGCGTGCTCGGGAAATCCATAAGGGAAACGGGCACCAGTAGGGATATGGTGGCTCTTGTATCAGACGGCGTTTCTCCTTATGGTGTTCAGCTTTTACAGGCTGATGGATGGATTGTAGAGCGTATTGGTTTATTGGCTAATCCAAACCATAAAAGGCCAAAGAGATTTTGGGGAGTTTACACCAAACTAAAAATATTTAACATGACCAACTACAAGAAAGTTGTCTACCTCGATGCTGACACCGTCGTCCTCAGAAATATTGATGATCTCTTCCAATGCCAAAAGTTCTGTGCAAACTTGAAACATTCTGAAAGGCTGAACTCTGGAGTCATGGTTGTGGAGCCTTCTGAATCAGTTTTCAAGGATATGATGGATAAAGTTTCTACGTTGCCATCTTATACTGGAGGAGATCAAGGTTTTCTTAATTCATACTATGCAGATTTTCCCAATGCTCGACTTTTTGAACCAAATTTATCTGCAGATCAACGGAAATCTAGACCCGAGCCTTCCATGGAACGACTATCAACACTGTATAATGCAGATGTTGGTTTGTACATGCTGGCCAACAAGTGGATGGTGGATGGAAGTGAATTGCGAGTTGTTCATTACACACTTGGCCCACTTAAACCTTGGGATTGGTGGACAGCTTGGCTGTTGAAGCCTGTTGATCTGTGGCAGAGTTTTAGAGTGAAGCTGGAGGCATCTCTTTCTGGAACTGAAGGAGGAAATGATCCTCATAAACAACTTGTAGTTAAAATTCTTTTTGTTCTCCCTCTGTTGATTACTCTCTTTTATGGACGGCGATTTTTAATTCAGGTGCAGCAAGGCCTCCTGTGCAATGGGTCCTTTTTTGGATATGTCAGACAACTCTATTACAAATACAAGTCTGGCAGTAGTTTGCCTATCTACTCAACAGTTGGAGTCAGCTCGTCAGCTAGCACTAATCAACAGTATATAAATGGTTTGGGAGGTTCCACAAATGCTCATAAGCTACCACCTTATCTTGGTGTTTTGTCGATATTTGTTTCCTTTCTTGCTGTAGCAGTATCTGTTGGCATAGGAGCTTTCCTTGTACCAAGGCAGGTAATGCCATGGACTGGGATTGTGCTAGCTTATGAGTGGTCTTTCTTTCTTTTTATGATGATTTTTGGCAAGTATCTGGATGTGGTTAATGCATGGGGAAAAGCGTCTGCTTCTGTTACATTTACTGGGGGCTCTTCTGCTTCTCCCGAATATGATTCTGGTAAAGGTCATCAACGACACAATTCTAGTTGTGATGCTGCAGCATTTTATTTTGGAGTGGGAATGGCAGTATTGGCTATACTCATACCTAGTTTGCCATTTATCTTTGGAGTTACAGCACTGTTTCTGCGATTGGCTATGATGATAGGAGGCGGCTTCGTCTTAGTATCCTTCATGACGTATGCTTCAGAACATCTGGCAATTCGATCATTTCTGAAAGGGCGCGAGGACCGGAACTTGCTTAATTCAAGACATCTGTGTTGTGGATTTTAAAAATGGAGGCTTTGTAAATTGTAATTTATTGTATTATTACACATTTCCAGTGCTGAAATTAAAATGGAAATTATTTATATTTATATTTGTGCTAATGTTCCTCGCACTAACTTCAGCTGATAAAATTAAAACATTTGTATTGTCCTTTTGAAGGAACATATAACCCTTCGGTGCCTTGTTTAGCTCAGATCCATTTTATATTTTTTAAGCCAAGAATGGCGCGGTTTGTATCTGAGCATTTAAGTTAATTTTTTTAAAGAGTAACTTACTACGGTTGCCATCTTCCTTTAACCGCATAAGAGCGTCGACTTTATGGTGC

Ace file of the UniGene sp_v1.1_unigene63

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycogenin, putative (EC:2.4.1.186)	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLU5

Fln msg:

Fln protein: MKPRDLLCFLVAAVYILVRLGFVVESVRLGDGGVKVQVPRSQQTMEAYATLLYGDEFLLGVRVLGKSIRETGTSRDMVALVSDGVSPYGVQLLQADGWIVERIGLLANPNHKRPKRFWGVYTKLKIFNMTNYKKVVYLDADTVVLRNIDDLFQCQKFCANLKHSERLNSGVMVVEPSESVFKDMMDKVSTLPSYTGGDQGFLNSYYADFPNARLFEPNLSADQRKSRPEPSMERLSTLYNADVGLYMLANKWMVDGSELRVVHYTLGPLKPWDWWTAWLLKPVDLWQSFRVKLEASLSGTEGGNDPHKQLVVKILFVLPLLITLFYGRRFLIQVQQGLLCNGSFFGYVRQLYYKYKSGSSLPIYSTVGVSSSASTNQQYINGLGGSTNAHKLPPYLGVLSIFVSFLAVAVSVGIGAFLVPRQVMPWTGIVLAYEWSFFLFMMIFGKYLDVVNAWGKASASVTFTGGSSASPEYDSGKGHQRHNSSCDAAAFYFGVGMAVLAILIPSLPFIFGVTALFLRLAMMIGGGFVLVSFMTYASEHLAIRSFLKGREDRNLLNSRHLCCGF*

Protein Length: 567

Fln nts: ATGGGACGTCCCTTCTCGCGTTTCTCGATGAGCATTTATGTTGTAGCTCTCAAACTCTGTTCGCCCTACGAACACACGTATAACCCATTCAAATTATTGTCGTTGGTCCCCGTACGCCGGGGAAATCCAACACAACTCCGGAGGCATTCAAATTGCCTGTTCCCTCGTTGAGATTTTGGTTTGCCTATGCAACATGCGTCAAAATAACTGTCAATTCGGCATTCAACCTGCCATACTTCTGTGACCGTCGCACCAGCACACCACTGTGGAGAAATTTGTGTCTGACCCGTAATGAGTTTCATTAGAATAATTGAATTGCATTCGCCATTTTCTGTTTAGAGATTTTGAGTCAAATCATTCAGTGCCTGTATTTTCTGCGAAAAAAATTGAAACGCAGACTCAAATTCGAGGGTTTCAAAAGTTTCGCGCCCATAGGATCTAGGGCCTTATACCCGACGATCCAGGGCTCCGCCGATCTTGTACCATCCATTAGGAGGGAATCTTGTTTTGAAT_-_ATGAAGCCGAGGGATCTCTTGTGTTTTCTCGTGGCAGCGGTGTATATTTTGGTGCGATTAGGGTTTGTAGTCGAGAGTGTCCGTTTGGGCGATGGCGGTGTGAAGGTCCAGGTGCCGCGATCGCAGCAGACTATGGAAGCGTATGCGACTCTTCTTTATGGAGATGAATTTCTACTGGGAGTTCGCGTGCTCGGGAAATCCATAAGGGAAACGGGCACCAGTAGGGATATGGTGGCTCTTGTATCAGACGGCGTTTCTCCTTATGGTGTTCAGCTTTTACAGGCTGATGGATGGATTGTAGAGCGTATTGGTTTATTGGCTAATCCAAACCATAAAAGGCCAAAGAGATTTTGGGGAGTTTACACCAAACTAAAAATATTTAACATGACCAACTACAAGAAAGTTGTCTACCTCGATGCTGACACCGTCGTCCTCAGAAATATTGATGATCTCTTCCAATGCCAAAAGTTCTGTGCAAACTTGAAACATTCTGAAAGGCTGAACTCTGGAGTCATGGTTGTGGAGCCTTCTGAATCAGTTTTCAAGGATATGATGGATAAAGTTTCTACGTTGCCATCTTATACTGGAGGAGATCAAGGTTTTCTTAATTCATACTATGCAGATTTTCCCAATGCTCGACTTTTTGAACCAAATTTATCTGCAGATCAACGGAAATCTAGACCCGAGCCTTCCATGGAACGACTATCAACACTGTATAATGCAGATGTTGGTTTGTACATGCTGGCCAACAAGTGGATGGTGGATGGAAGTGAATTGCGAGTTGTTCATTACACACTTGGCCCACTTAAACCTTGGGATTGGTGGACAGCTTGGCTGTTGAAGCCTGTTGATCTGTGGCAGAGTTTTAGAGTGAAGCTGGAGGCATCTCTTTCTGGAACTGAAGGAGGAAATGATCCTCATAAACAACTTGTAGTTAAAATTCTTTTTGTTCTCCCTCTGTTGATTACTCTCTTTTATGGACGGCGATTTTTAATTCAGGTGCAGCAAGGCCTCCTGTGCAATGGGTCCTTTTTTGGATATGTCAGACAACTCTATTACAAATACAAGTCTGGCAGTAGTTTGCCTATCTACTCAACAGTTGGAGTCAGCTCGTCAGCTAGCACTAATCAACAGTATATAAATGGTTTGGGAGGTTCCACAAATGCTCATAAGCTACCACCTTATCTTGGTGTTTTGTCGATATTTGTTTCCTTTCTTGCTGTAGCAGTATCTGTTGGCATAGGAGCTTTCCTTGTACCAAGGCAGGTAATGCCATGGACTGGGATTGTGCTAGCTTATGAGTGGTCTTTCTTTCTTTTTATGATGATTTTTGGCAAGTATCTGGATGTGGTTAATGCATGGGGAAAAGCGTCTGCTTCTGTTACATTTACTGGGGGCTCTTCTGCTTCTCCCGAATATGATTCTGGTAAAGGTCATCAACGACACAATTCTAGTTGTGATGCTGCAGCATTTTATTTTGGAGTGGGAATGGCAGTATTGGCTATACTCATACCTAGTTTGCCATTTATCTTTGGAGTTACAGCACTGTTTCTGCGATTGGCTATGATGATAGGAGGCGGCTTCGTCTTAGTATCCTTCATGACGTATGCTTCAGAACATCTGGCAATTCGATCATTTCTGAAAGGGCGCGAGGACCGGAACTTGCTTAATTCAAGACATCTGTGTTGTGGATTTTAA___AAATGGAGGCTTTGTAAATTGTAATTTATTGTATTATTACACATTTCCAGTGCTGAAATTAAAATGGAAATTATTTATATTTATATTTGTGCTAATGTTCCTCGCACTAACTTCAGCTGATAAAATTAAAACATTTGTATTGTCCTTTTGAAGGAACATATAACCCTTCGGTGCCTTGTTTAGCTCAGATCCATTTTATATTTTTTAAGCCAAGAATGGCGCGGTTTGTATCTGAGCATTTAAGTTAATTTTTTTAAAGAGTAACTTACTACGGTTGCCATCTTCCTTTAACCGCATAAGAGCGTCGACTTTATGGTGC

Fln Alignment:

sp_v1.1_unigene63___MKPRDLLCFLVAAVYILVRLGFVVESVRLGDGGVKVQVPRSQQTMEAYATLLYGDEFLLGVRVLGKSIRETGTSRDMVALVSDGVSPYGVQLLQADGWIVERIGLLANPNHKRPKRFWGVYTKLKIFNMTNYKKVVYLDADTVVLRNIDDLFQCQKFCANLKHSERLNSGVMVVEPSESVFKDMMDKVSTLPSYTGGDQGFLNSYYADFPNARLFEPNLSADQRKSRPEPSMERLSTLYNADVGLYMLANKWMVDGSELRVVHYTLGPLKPWDWWTAWLLKPVDLWQSFRVKLEASLSGTEGGNDPHKQLVVKILFVLPLLITLFYGRRFLIQ--VQQGLLCNGSFFGYVRQLYYKYKSGSSLPIYSTVGVSSSASTNQQYINGLGGSTNAHKLPPYLGVLSIFVSFLAVAVSVGIGAFLVPRQVMPWTGIVLAYEWSFFLFMMIFGKYLDVVNAWGKASASVTFTGGSSASPEYDSGKGHQRHNSSCDAAAFYFGVGMAVLAILIPSLPFIFGVTALFLRLAMMIGGGFVLVSFMTYASEHLAIRSFLKGREDRNLLNSRHLCCGF
B8LLU5____________MKPRDLWCFLVAAVYILVRLGFVVESARLGDGGVKVQVPRSRKTLEAYATLLYGDEFLLGVRVLGKSIRDTGTTRDMVALVSDGVSPYAVQLLQADGWIVEHIGLLANPNQKRPKRFWGVYTKLKIFNMTNYKKVVYLDADTVVLRSIDDLFQCRKFCANLKHSERLNSGVMVVEPSESVFKDMMAKVTTLPSYTGGDQGFLNSYYGDFPNARLFEPNLSADELKSRPEPSMERLSTLYNADVGLYMLANKWMVDGSELRVVHYTLGPLKPWDWWTAWLLKPVDLWQGFRVKLEGSLPGTEGENDPHKQLIVRILFVLPLLVALFYGRRFLIQVPVQQGLLCNWSFCGYVRQLYYKYKSGSSLPIYSTVGVTSSVSTNQQYANGLGGVSNAHKLPPYLGVLSIFVSFLSVAVSVGVAAFLVPRQVMPWTGIMLAYEWSFFLFMIIFGKYLDVVNAWGKSSASGTYAGGSSDSSEYDSGKGHQRHTSSCDAATFYSGVGMAVLAILIPSLPFIFGVTALFLRLALMIGGGLVLVSFMTYASEHLAIRSFLKGREDRNLLNSTYLCCGF

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1405		50		50	1.0
1461		16		83	0.994512
1464		16		83	0.994512
1465		83	16		0.994512
1467		83	16		0.994512
1468	16	83			0.994512
1475			16	83	0.994512
1477	83	16			0.994512
1479			16	83	0.994512
1480	83			16	0.994512
1482	16			83	0.994512
1486	16			83	0.994512
1623		75		25	1.0
1902			12	87	0.999964
1903			12	87	0.999964
1904	87		12		0.999964
2126			8	92	0.999718
2129	92		8		0.999718
2130			92	8	0.999718
2131	92		8		0.999718
2134	92	8			0.999718
2141	88		4		0.999262
2142	92			8	0.999718
2143			8	92	0.999718
2146	8		92		0.999718
2147	92	8			0.999718
2507	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1819	1831	TCTT TCTT TCTT T	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain