SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62

Length: 1200 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene62

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acetylornithine aminotransferase, putative (EC:2.6.1.11)	-	-	64%
FL-Next	tr=Ornithine aminotransferase; Pinus sylvestris (Scots pine).	-	-	30%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	77%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	77%
Blast2go	cutin biosynthetic process	GO:0010143	Biological Process	77%
Blast2go	cellular nitrogen compound metabolic process	GO:0034641	Biological Process	77%
Blast2go	wax metabolic process	GO:0010166	Biological Process	77%
Blast2go	copper ion binding	GO:0005507	Molecular Function	77%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	77%
Blast2go	catalytic activity	GO:0003824	Molecular Function	77%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Acetylornithine/Succinylornithine aminotransferase	IPR004636	-	77%
Blast2go	Aminotransferase class-III	IPR005814	-	77%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	77%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	77%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1RPP3

Fln msg: Distance to subject end: 239 aas, your sequence is shorter than subject: 284 - 468

Fln protein: MASLYFHCITNPQEHLLGRPLFESRESQKTSLLQGRYCNPRVSEFKNPSGGLRHGKREGRLRISACIATDAAERTSVVNGVGVDLGFDRSSSGVIEAERKYFVGNYARSPAVFVKGEGCKLYDVEGKEYLDLTAGIAVNALGHGDPAWLKAVTEQAATLTHVSNVFHTVPQVKLAKRLVESSFSDKVFFANSGTEANEAAIKFARKYQQTLRSAKEENATEFISFTNSFHGRTMGALALTSKEKYRTPFEPVMPGVKFVEYGNVEATKKAVQPGKTAAIFVEPV

Protein Length: 285

Fln nts: ATGGGGATACCCACCGTCGTGACCTTGGCTGTCACTCAATCTCGTTAGAGCCTTCAAGCTGCTGTCAAGCTTGATGTCTTTCCTGATACAAAAGCAGTGCAAATAGTTTTCGAACCTCAATAATTCAACCACGCGGTGATCAATAATTCACTTTGACACCAATAATTTTGGTACGCCACTGAAGATTTTTCTCCGCCGCTTTTTCTTTATTCCATTCCAATTTCGCTGTCTTCGGTTGTGCCAAAGCTATCGTTTGACGTCTCAAACATACAGTAGGCGTTATAAATAGCTCTTCAACTCTATTTGTAAACACTCGGAAAAGAGAAGCGGAAGCAAATTCGGGCAAAA_-_ATGGCTTCTTTATACTTTCATTGCATTACGAATCCTCAGGAGCATTTGTTAGGCCGTCCCCTGTTTGAATCTAGGGAGTCCCAGAAAACGTCGTTGCTCCAAGGGCGCTATTGCAATCCCAGAGTTTCGGAGTTTAAAAACCCTAGCGGGGGTTTACGCCATGGAAAACGTGAAGGTCGGTTGAGAATATCTGCTTGCATTGCCACGGATGCTGCAGAGAGGACTTCTGTAGTGAATGGGGTAGGTGTAGACTTAGGGTTTGATAGGAGCAGCAGTGGTGTTATCGAAGCTGAAAGGAAGTATTTCGTGGGGAATTATGCTAGGTCGCCTGCTGTTTTTGTGAAGGGAGAGGGTTGTAAATTATATGATGTAGAGGGAAAGGAGTATTTAGATTTGACTGCAGGGATTGCAGTGAACGCGCTCGGTCACGGCGATCCAGCTTGGCTGAAAGCAGTGACGGAACAGGCAGCTACTCTTACTCATGTCAGCAATGTCTTTCATACAGTGCCACAGGTGAAGCTTGCAAAGCGTCTTGTTGAATCGTCATTTTCTGATAAGGTTTTCTTTGCAAACTCTGGTACTGAAGCAAATGAAGCAGCAATCAAATTTGCAAGGAAATACCAGCAAACTTTGAGGTCTGCCAAAGAAGAGAATGCCACAGAATTTATTTCTTTTACAAATAGTTTTCATGGAAGAACAATGGGAGCCCTTGCTTTAACCAGCAAAGAGAAGTACAGAACTCCATTTGAGCCTGTCATGCCTGGAGTGAAATTTGTTGAGTATGGAAACGTGGAGGCAACAAAAAAGGCAGTTCAACCTGGAAAGACAGCAGCCATTTTTGTTGAACCTGTT

Fln Alignment:

sp_v1.1_unigene62___NGVGVDLGFDRSSSG-------VIEAERKYFVGNYARSPAVFVKGEGCKLYDVEGKEYLDLTAGIAVNALGHGDPAWLKAVTEQAATLTHVSNVFHTVPQVKLAKRLVESSFSDKVFFANSGTEANEAAIKFARKYQQTLRSAKEENATEFISFTNSFHGRTMGALALTSKEKYRTPFEPVMPGVKFVEYGNVEATKKAVQP--GKTAAIFVEPV
Q1RPP3____________NGQGIGL-MSRSISGNAVSSQELIEYESDYSAHNYHPIPMVFSKAKDVHVWDPEGRKYLDFLSAYSAVNQGHCHEKILNALSQQAQQLTLSSRAFHNDIFPIFAQHLTSMFGYEMILPMNTGAEGVETALKLARKWGYEKKHIPKNEAI-IISCCGCFHGRTTAVISMSCDNEATRGFGPFLPGLLKVDFGDADSLKSMFEAHGDKVAGFLFEPI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
835		85		14	0.999981
1055	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain