SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57

Length: 2866 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene57
CAGTAAAGAAAAGGAAAGCGGTGGTGCAGTGACACAGTGCGGTTGCAAAGGGGATTGAGATTCTCATAGGATCGATGGCTTCACTATTAACCCCCGAAGGGCTGGTGTTGACATGCATTTAGGGGCCTCTATAAGCTCTCATGACTGGAAAGGCCACGGTTCTGCGGGATCTTCGCTTAAATGGGCCTTGATTCGTAGTTTTAAGGCGAGGACGGCAAAGGAGGAGGAGGTTCTAGAAAGTTCTAGAAATTTTGGTGGACAGGCGGAAGATGATCTGCGGAGGGACGGAAGGGGAGGTGGTGGCGGCAACAGCAGCAACATCGTCCGGGGCGCCGCCACCTCTCGATTGGAAATTCTCTCAGGTCTTTGGCGAACGCGCAGCTGGAGAAGATGTTCAAGAGGTTGATATCATCTCAGCAATTGAGTTTGATAAGACTGGTGAGCATCTTGCTACTGGAGATCGTGGTGGTCGTGTTGTACTCTTTGAGAGGACAGATGGAAAAGATTTACATTCTCGAAAAGAGTTGGAGAGAATGGATTATCCTATTACAAGGCATCCTGAATTTCGCTACAAGACAGAGTTCCAGAGTCATGAGCCTGAGTTTGACTATTTGAAGAGTTTGGAGATAGAGGAGAAAATCAATAAGATCAGGTGGTGCCCGTCAGCTAATGGTGCCCTATTTCTTCTTTCGACAAATGACAAAACTGTCAAGTTTTGGAAGGTTCATGAGAAAAAGATAAAGAAGTTGTGTGATATGAACATAGACTCGTCAGCACCTTCAGGAAATGGAAGCATGGTTATGGAGAGCTCTGTGATAAATCCAATATCACATACATCATGTTCTTCCAATGGTGGTTCTTTGGAGCAGACTAGCAATGACTTTGTATTTCCTCCTGGGGGCATCCCTTCACTCCGTTTACCTATGGTGGCCAGCAGCGAAACAAGTTTAGTTGCTAGGTGTCGGAGAGTATATGCTCATGCTCATGATTATCATATAAATTCTATTTCAAACAACAGTGATGGTGAAACTTTCATATCAGCGGATGACCTAAGAATAAACTTATGGAACCTGGAAATATGTGATCAGAGTTTCAACATTGTTGATGTCAAACCTGCCAACATGGAAGACCTGACTGAAGTTATAACATCAGCAGAATTCCATCCGACTCATTGCAACTCATTAGCATATAGTAGCTCAAAGGGCACAATACGACTGATTGATATGCGGCAATCAGCTTTGTGTGACAATCATGCAAAATTATTTGAGGAGCAGGAAGCACCTGGTTCAAGATCATTTTTCACAGAGATAATTGCTTCCATATCTGATATAAAGTTTGGAAAAGATGGCAGACATATTCTAAGCCGTGACTATATGACACTCAAGCTATGGGATATAAACATGGAATCTAGGCCAGTTGCGACATTCAGAGTCCATGAATATCTACGACCCAAGTTATGTGATTTATATGAAAATGATTCAATTTTCGACAAATTTGAGTGTTGTTTAAGTGGAGATGGACTTCGTGTGGCAACTGGTTCATACAGCAACCTGTTTCGAGTTTTTGGTAGTGTTCCCTCTAGTGAAGAGGCAACCACATTAGAAGCTAGCAAAACTCCCAATAGAAGACGGAACATACAGGCCTCTTCTAAGACTTCAAGATCTCTTACGAGTCTTGCTCGCGTCCGCAATAGACGAGGAAATGAGAGCCCAGGAAGTGAGATGAATGGAGGTGGTTATGATTTTAGTACAAAGTTGCTTCACTTGGCATGGCATCCAACAGCAAATGTCATTGCCTGTGCCGCTTCGAATAGCTTGTACATGTATTATGCCTAAAATAAAAAAAATATTTTTGAAGTATTTAAAGAAAGTGATTTTTTTTCCATCTCCATCATTTGTGGAGCAGTTCCAGCAAAACTCCAGGCTTAATGCAACGTTTTATGTTCAAGAACTTGTTATATGAGCCTCCGATCATAGCTCATAGCATGTTCATTTACTGATCCCAAGCTATAAAGGCTGCGAGAAGCCTTTTATCAATGAAGTACCTGTCTTATCTGTCGGGAGAAGCGGCATAATTTGGTAATCAGGTTCAATGTTGATTCTTTCGGAATGGGTGCAATTTTAATTTTCTGTAGCGTTCATACATGGGCTGAGAATGTATCTAACAGTTATCACTATTTAAGAGGTCACTGATGTAGCTTAGGCTGAAACGAGGTGTCCAAATTTTCAGATTGTACTGTTATTTGGGGTAAATCATCAGGCAGTCTGATGATATTTCAAGGCTTGAAAGATTTACTGGCATCCATTCTTACCTCTGTGAAAATATATGCCATATCGTATGAGGATAGGTATTAAGATATACACTCAAAGGTTTGCAAAGGATTGACAGGTTTTGATGGCACATCTGGAGCAGCTTTCATGTAACAACACTTTTAGTTAAGATCCAAATGCAATCACGACATCCACATTTTTTCATTGATTTTTTAGGACAAGCAGTCAATTCGTGTAACTAAAGTACCGAAGTTACTCCTTTTTTGGGAGGAATGCATACCTTATTTGATACATCATTTGTCATTTAATTCATTTAAATTACATTGAATTCCAAAACTGCCGGAGGTGATCTTTGTATGAAATGTGTTTCCTTCAATGTAAACTGGGATGTGGCTCCTATAATGGCAGCTTGATAGTTAACATTTTCAGCATTAAGCTTATGTCAAGTTGCAATAATATTAAAACACTGTATGACAACCAACTAGTAAATTTGATTGCCAAAATTCTTTGTACGATTTGGTACATGTACATTTTCAGCAGTGAGCATGTTTTGATGCACAAGTTTCGTGTAAAGGAAATTCTGTGTCAGATTTTTG

Ace file of the UniGene sp_v1.1_unigene57

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform n=3 Tax=rosids RepID=Q9FVD4_MEDVA	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	protein	-	-	85%

Source	InterPros	Term	Type	Identity
Blast2go	Protein phosphatase 2A, regulatory subunit PR55	IPR000009	-	85%
Blast2go	WD40 repeat	IPR001680	-	85%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	85%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	85%
Blast2go	Protein phosphatase 2A, regulatory subunit PR55, conserved site	IPR018067	-	85%
Blast2go	WD40 repeat, subgroup	IPR019781	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACE2

Fln msg: your sequence is longer than subject: 522 - 152

Fln protein: MICGGTEGEVVAATAATSSGAPPPLDWKFSQVFGERAAGEDVQEVDIISAIEFDKTGEHLATGDRGGRVVLFERTDGKDLHSRKELERMDYPITRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCPSANGALFLLSTNDKTVKFWKVHEKKIKKLCDMNIDSSAPSGNGSMVMESSVINPISHTSCSSNGGSLEQTSNDFVFPPGGIPSLRLPMVASSETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEICDQSFNIVDVKPANMEDLTEVITSAEFHPTHCNSLAYSSSKGTIRLIDMRQSALCDNHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRHILSRDYMTLKLWDINMESRPVATFRVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGSVPSSEEATTLEASKTPNRRRNIQASSKTSRSLTSLARVRNRRGNESPGSEMNGGGYDFSTKLLHLAWHPTANVIACAASNSLYMYYA*

Protein Length: 523

Fln nts: CAGTAAAGAAAAGGAAAGCGGTGGTGCAGTGACACAGTGCGGTTGCAAAGGGGATTGAGATTCTCATAGGATCGATGGCTTCACTATTAACCCCCGAAGGGCTGGTGTTGACATGCATTTAGGGGCCTCTATAAGCTCTCATGACTGGAAAGGCCACGGTTCTGCGGGATCTTCGCTTAAATGGGCCTTGATTCGTAGTTTTAAGGCGAGGACGGCAAAGGAGGAGGAGGTTCTAGAAAGTTCTAGAAATTTTGGTGGACAGGCGGAAG_-_ATGATCTGCGGAGGGACGGAAGGGGAGGTGGTGGCGGCAACAGCAGCAACATCGTCCGGGGCGCCGCCACCTCTCGATTGGAAATTCTCTCAGGTCTTTGGCGAACGCGCAGCTGGAGAAGATGTTCAAGAGGTTGATATCATCTCAGCAATTGAGTTTGATAAGACTGGTGAGCATCTTGCTACTGGAGATCGTGGTGGTCGTGTTGTACTCTTTGAGAGGACAGATGGAAAAGATTTACATTCTCGAAAAGAGTTGGAGAGAATGGATTATCCTATTACAAGGCATCCTGAATTTCGCTACAAGACAGAGTTCCAGAGTCATGAGCCTGAGTTTGACTATTTGAAGAGTTTGGAGATAGAGGAGAAAATCAATAAGATCAGGTGGTGCCCGTCAGCTAATGGTGCCCTATTTCTTCTTTCGACAAATGACAAAACTGTCAAGTTTTGGAAGGTTCATGAGAAAAAGATAAAGAAGTTGTGTGATATGAACATAGACTCGTCAGCACCTTCAGGAAATGGAAGCATGGTTATGGAGAGCTCTGTGATAAATCCAATATCACATACATCATGTTCTTCCAATGGTGGTTCTTTGGAGCAGACTAGCAATGACTTTGTATTTCCTCCTGGGGGCATCCCTTCACTCCGTTTACCTATGGTGGCCAGCAGCGAAACAAGTTTAGTTGCTAGGTGTCGGAGAGTATATGCTCATGCTCATGATTATCATATAAATTCTATTTCAAACAACAGTGATGGTGAAACTTTCATATCAGCGGATGACCTAAGAATAAACTTATGGAACCTGGAAATATGTGATCAGAGTTTCAACATTGTTGATGTCAAACCTGCCAACATGGAAGACCTGACTGAAGTTATAACATCAGCAGAATTCCATCCGACTCATTGCAACTCATTAGCATATAGTAGCTCAAAGGGCACAATACGACTGATTGATATGCGGCAATCAGCTTTGTGTGACAATCATGCAAAATTATTTGAGGAGCAGGAAGCACCTGGTTCAAGATCATTTTTCACAGAGATAATTGCTTCCATATCTGATATAAAGTTTGGAAAAGATGGCAGACATATTCTAAGCCGTGACTATATGACACTCAAGCTATGGGATATAAACATGGAATCTAGGCCAGTTGCGACATTCAGAGTCCATGAATATCTACGACCCAAGTTATGTGATTTATATGAAAATGATTCAATTTTCGACAAATTTGAGTGTTGTTTAAGTGGAGATGGACTTCGTGTGGCAACTGGTTCATACAGCAACCTGTTTCGAGTTTTTGGTAGTGTTCCCTCTAGTGAAGAGGCAACCACATTAGAAGCTAGCAAAACTCCCAATAGAAGACGGAACATACAGGCCTCTTCTAAGACTTCAAGATCTCTTACGAGTCTTGCTCGCGTCCGCAATAGACGAGGAAATGAGAGCCCAGGAAGTGAGATGAATGGAGGTGGTTATGATTTTAGTACAAAGTTGCTTCACTTGGCATGGCATCCAACAGCAAATGTCATTGCCTGTGCCGCTTCGAATAGCTTGTACATGTATTATGCCTAA___AATAAAAAAAATATTTTTGAAGTATTTAAAGAAAGTGATTTTTTTTCCATCTCCATCATTTGTGGAGCAGTTCCAGCAAAACTCCAGGCTTAATGCAACGTTTTATGTTCAAGAACTTGTTATATGAGCCTCCGATCATAGCTCATAGCATGTTCATTTACTGATCCCAAGCTATAAAGGCTGCGAGAAGCCTTTTATCAATGAAGTACCTGTCTTATCTGTCGGGAGAAGCGGCATAATTTGGTAATCAGGTTCAATGTTGATTCTTTCGGAATGGGTGCAATTTTAATTTTCTGTAGCGTTCATACATGGGCTGAGAATGTATCTAACAGTTATCACTATTTAAGAGGTCACTGATGTAGCTTAGGCTGAAACGAGGTGTCCAAATTTTCAGATTGTACTGTTATTTGGGGTAAATCATCAGGCAGTCTGATGATATTTCAAGGCTTGAAAGATTTACTGGCATCCATTCTTACCTCTGTGAAAATATATGCCATATCGTATGAGGATAGGTATTAAGATATACACTCAAAGGTTTGCAAAGGATTGACAGGTTTTGATGGCACATCTGGAGCAGCTTTCATGTAACAACACTTTTAGTTAAGATCCAAATGCAATCACGACATCCACATTTTTTCATTGATTTTTTAGGACAAGCAGTCAATTCGTGTAACTAAAGTACCGAAGTTACTCCTTTTTTGGGAGGAATGCATACCTTATTTGATACATCATTTGTCATTTAATTCATTTAAATTACATTGAATTCCAAAACTGCCGGAGGTGATCTTTGTATGAAATGTGTTTCCTTCAATGTAAACTGGGATGTGGCTCCTATAATGGCAGCTTGATAGTTAACATTTTCAGCATTAAGCTTATGTCAAGTTGCAATAATATTAAAACACTGTATGACAACCAACTAGTAAATTTGATTGCCAAAATTCTTTGTACGATTTGGTACATGTACATTTTCAGCAGTGAGCATGTTTTGATGCACAAGTTTCGTGTAAAGGAAATTCTGTGTCAGATTTTTG

Fln Alignment:

sp_v1.1_unigene57___MTLKLWDINMESRPVATFRVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGSVPSSEEATTLEASKTPNRRRNIQASSKTSRSLTSLARVRNRRGNESPGSEMNGGGYDFSTKLLHLAWHPTANVIACAASNSLYMYYA
D5ACE2____________MTLKLWDINMESSPIATFKVHEHLRPKLCDLYENDSIFDKFECSLSGDGLHVATGSYSNMFQVFGCFAGNDEGTILEASKSPN-RRILPTPSRPGRSLASLTRSRTRRGNESPSGEINGGASDFNSKLLHLAWHPAANVIACAASNSLYMYYA

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
672	66			33	0.997452
674	33	66			0.997452
675		33		66	0.997452
676	66	33			0.997452
677	66			33	0.997452
684	33	66			0.997452
798	83		16		0.994512
981		14		85	0.993533
982	14			14	0.984337
983	85		14		0.993533
985		14	85		0.993533
1130	85			14	0.993533
1131	85			14	0.993533
1133	85		14		0.993533
1134		14		85	0.993533
1135	14		85		0.993533
1138	85			14	0.993533
1142		85	14		0.993533
1150	85		14		0.993533
1152		14		85	0.993533
1153		14		85	0.993533
1156	85		14		0.993533
1158		85	14		0.993533
1257	87		12		0.992554
1508	20		80		0.995493
1642			90	10	0.90298
1744		41		58	1.0
2699		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
219	230	AGG AGG AGG AGG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain