SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45

Length: 1624 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene45

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	45%
Blast2go	protein	-	-	3.75864e-38	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SP67

Fln msg: your sequence is shorter than subject: 277 - 1014

Fln protein: ENNEQNQTPDNQSRRIRASSSSSLSYNSDELLSDGNDVEEGLDIQQGNQNTPTEAIMSAGRGYENKEQKTSLDESLADFEEERISILEQLKFLEEKLHKLAEDDQAGVANPEANGVNGVLTEDYEMQSKTEGNDEDNMKEAHVDEETMETIHGNGTLTPRRASGAKAKRLLPLFDATSVDGDSLHHTEEFSPADVSNDWRTVSMVVRDNNRLAIEDEVYHVYERLQALEADREFLKHTIKSLRKGDEGMKLLQEIAQHLRDLRRVELKARNISDIM*

Protein Length: 278

Fln nts: AGAAAACAATGAGCAAAACCAAACACCAGACAATCAGTCTAGGAGAATCAGGGCATCCTCAAGTTCTTCGCTAAGTTATAACAGTGATGAACTCTTATCTGATGGTAATGATGTAGAGGAAGGACTTGATATACAACAAGGTAATCAAAATACACCCACTGAAGCTATCATGAGCGCAGGAAGAGGGTATGAAAATAAAGAACAGAAGACCAGTCTAGATGAATCTCTGGCTGATTTTGAGGAGGAGAGGATATCAATTTTGGAACAATTAAAATTCTTGGAGGAGAAGCTTCACAAATTGGCAGAGGATGACCAAGCTGGCGTGGCTAATCCAGAGGCAAATGGAGTGAATGGTGTTCTCACAGAAGACTATGAAATGCAAAGTAAGACCGAAGGTAATGATGAGGACAACATGAAAGAAGCCCATGTTGATGAGGAAACTATGGAAACAATACATGGCAATGGAACACTTACTCCTAGAAGAGCATCAGGTGCAAAGGCAAAAAGGCTTCTGCCTCTGTTTGATGCTACCAGTGTTGATGGAGATTCATTACATCACACAGAAGAGTTCTCCCCAGCAGATGTGTCTAATGATTGGCGCACTGTTTCTATGGTTGTAAGAGACAATAACCGACTTGCAATTGAAGATGAAGTGTATCATGTATATGAAAGATTGCAGGCACTTGAAGCTGACCGGGAGTTCCTGAAACATACTATCAAATCACTGAGAAAGGGTGATGAGGGAATGAAACTGCTTCAGGAAATAGCTCAGCACCTACGTGACCTCAGAAGAGTAGAACTTAAAGCCAGGAACATCAGTGATATTATGTAG___TTGGGTGCACTTTTTCTTATGCAAACAAAGGTGAATAGTTTTATGATGATGCAGCCCAAATATTGCGAAGTCAAGCAGTTATGTTCCTTAGTATTTACAGGTGGTATCGAACAATGGAGATGATGGATGGCTTCTTGTTTTTCATATATTCATTGCTCTGTGACAGCAAAAGCAACTTGGTTGGCATCAGACACTAGTAAAGGTGGTACTCCCGGGATGCAGGCACAAGCTATCCTTAACTGCAAAATCAAGAATAGAGATGCAACATGACATTCAATGCATCATCTGACAAGATGCAAAGATAATTCATGGCTTTCTGCTGTGCAAGCCTTATTTTAACAGTTTCTAAAAGGATTTCCTACAAAGTGTTTTGGGTTCAAAAATGTCCATAGCAAAGTCAGAGGCTTGTTTTTATTGGGGGACCCAATTTTTGTCAATATAATAGTTATATATATGTCAGGGAAAATTATTGTCACTGTAACATGCTGGCTGCAGTGAATGTTAGTGCCTTTTCGAAGTGTGAGATGTTTGTATTAGTGACAGAAGCCTGACAAGATTCATTGGCTGGCACATATAGATTATAGTAGTTGACGGGGAGAGTGGGGGAGTGGGGAGTGCGAGGTAGCAAAATATTTTGTGTGTGATAGCAAAAATGGAATTGATTCTTTGTAATAAGGGTGCTTTTGTGGTAGATAAAGGGATATCGTTGTGTGAGCCCATGAAGGTTAACAGTTGTAACAATCTATTGGTGTATTCAGTGATTTTTGATAAAATGCTCCCTTAACTTTTACT

Fln Alignment:

sp_v1.1_unigene45___EEGLD--IQQGNQNTPTEAIMSAGRGYENKEQKTSLDESLADFEEERISILEQLKFLEEKLHKLAEDDQAGVANP-------EANGVNGVLTEDYEMQSKTEGNDEDNMKEAHVDEETMETIHGNGT-LTPRRASGAKAKRLLPLFDATSVDGDSLHHTEEFSPADVSNDWRTVSMVVRDNNRLAIEDEVYHVYERLQALEADREFLKHTIKSLRKGDEGMKLLQEIAQHLRDLRRVELKARNISD
B9SP67____________EVGFDNHLESSNQNTPVDAVVY-------------LEESLNNFEEERLSILEQLKVLEEKLFTLSDEDEHHFEDIKPIEHLYEENG-NGY-NEDFDHSSEANGVANGHYKEM------------NGKHYQERKIIGAKAKRLLPLFDAIDSEAEDGMLNGHEEGVDSIVLLKSINKFDIDSKKLAIEEEVDHVYERLQALEADREFLKHCMGSLRKGDKGIELLQEILQHLRDLRSVELRARNMED

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
833			87	12	0.992554
834			12	87	0.992554
835			12	87	0.992554
850		85		14	0.993533
851		14		85	0.993533
889		90	10		0.90298
890		90	10		0.90298
1033	85		14		0.999981
1093			85	14	0.999981
1251			80	20	0.995493
1327		88		11	0.923564
1614		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain