SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39

Length: 2308 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene39
GGAATCACTGGCCAAAGCTTCATATATAAGCGGTTTCGAGCTGGAGGCCTGTAATGGGTGCGCGGAATTAGCGTGGTTCAAAGGAGAGCCGGCGAATCATTTCAAAGTCAGGAGTTTGGGGTTCCTGACTTCAATATTAAAGGATTACAGCTGCTGAGAGCTCCTGCTGATTGTTTGGAAAGCTTATTCAATGTGATGACACAGCCAGAACTTTTATGGCTTCGTTGTGAGGTAGATTCATCTTCCTCCCTACCTTCCAACTGTATTCCAATAACGAATCTACGAGTCTTAGAATTGGTTGAAGCGGAGAAGCGGCAGTCATTTNGGGAACACCCAATCCCGATCTTGGGAACTTTGTGGAACACTGAAATCCAGGCACCTCCACTTCAGTTGAGGGAGTTGAAAATTGGTTTGGAACTTTCACAGTTACCAAAGTCCATAGAGAAATTGAAATATCTGGAAAAGATTGAACTGACCAACTTTAAAGGAACATTGCCGGAAGAGTTCTTTCATCTCCGCTCACTGAAAGACTTGAGACTCAGGGCAGGAATGACGTCGTTGCCAGACTCTTTGGGTAACCTCACAAATCTCCAATATATTGACTTGTCTGGGTGCAAGCATTTGCAAACATTGCCGGTTTCCTTTGGAAATTTAAGAAAGCTCCAACATATTGGCTTGTCTCGGTGCGAGGATTTGCAAGCACTGCCGCCATCCCTTGGAAATTTAAAATATCTTCAAAATCTTATGCTGGTGGGGTGTGAGGGGTTGGAAAAACTGCCAGATTCCTTCATGAACTTGATTCGACTCAAACATCTCAATTTGAGAGAGTGCCGCAACTTGACCCTCTCTGGCCAAACACTAGAGAATATCGGCACGCTGGAAAGGTTAGACATTTCTCATTGCAAAGTGGAAGTATTGCCTGCCCAAGTCACACATCAGCAGTCCCTGGAAGAGCTAATTTTGGATTTTACCGTGTTAAAAGAATTGCCCAGTGCCATTGGAAACCTTAGACAGGTGTCATCCTTGTCAGCAGCTTATTGTCCGATTCGTGAAGTGCCATTTGCGAGTGTGGAGAAGATTCAAGCAGGCAGCAGATTGTTGGACCCCTCTATTGATAAGTGCATGCTTCGACTCAAATCCTTAACACTGCAGCAGACGAAAAATCACTGAAATATCATTTGCTGAAGGTGTTTGCCCAGTCCTTCAAGATCTCAATCTCAGTCATTGTGGTGATCTAGTGGAGGTTGGGGCATTGCCGGCAACACTAACATTCCTGGACTTGAATGGTTGTTGTGAATTGAAGAAAATAAAGGGGCTTCATGGCCTTGCAAATCTTCGATATTTGGGCATGAACGGGTGTATGCAAACAAAGGTGCTGCCAAATACGTGTGTCAGGGAGTTGAACAATCTTGAAGCCTTGCATTTAAAGCGTTGCCAGGGTAGGGTACTCAGAGTAATGCCATTTGTTGCCAATCAGGGTTCTGGTATGTTTCGACTCAAATCCTTAAACTTCTCGATGACGGCAGTGCGGGGGTGCTCATTCCCTGGAGGTGAGTTCCCAATCCTTAAATGGCTCGATCTCAGTGGTTGTCCTAATCTGAAGGAGGTTGGAGGATTGCCGACAGCACTAACGTCACTAGACTTGAATGATTGTCGCGCATTAAAGAAAATTAAGGGGCTTGGAGGCCTTGCAAGGCTTCGATATCTGGACATGGGCGGGTGTGAAGAAATAAAGGAGATACCAGGTCTGGATGTAGGGGAGTTGAACAACATTGAAGATTTGAATTTAACGGGATGCCCGATTAGTGTAGTCACTGTACTGCCATTTGTCAGTGTGGAAGAGCTTCAAGGAGGCCGCAGATTGTTGGACTCTTGTATTGACAACTGCATCATGCCTAGACTCAGACGGTTAGATCTGTCGAAGACGAGAATCTCTGAAATATCATTCGGTGAGGGTGTTTGCCCTGTCCTTAATTGGCTCCGTCTCCGTTGTTGTGATGCTCTAGTGGAGGTTGGAGCACTGCCAATAACACTAACAATACTGGACTTGACTGGTTGCTGTGCATTAAAGAAAATAACGGGGCTTCGTGGCCTTTCCAAGCTTCAGTATCTGTACATGAGAAGATGTTGTGCAGTTGAGGAGATGCCAGGTCTGGAAACGTTATCAGTGCAGTTCTTTCACTCTCCTGAATCTGAGGATACAGATGCAGTGATATGGGCTGACGCGTCAAATCGAGAAACCTTGCAAACCTTATTTATAAGAGATCAAGCGAGCTCCAACCTTGGTGCATTTAGGCAGTTCGCACAG

Ace file of the UniGene sp_v1.1_unigene39

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=1 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	1.99965e-42	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	protein	-	-	0.0	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	52%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1B3

Fln msg: Overlapping hits, possible frame ERROR between 1161 and 1136, and overlapping frame ERROR between 1753 and 1202, STOP codon was not found. Distance to subject end: 6 aas, your sequence is longer than subject: 706 - 384

Fln protein: MTQPELLWLRCEVDSSSSLPSNCIPITNLRVLELVEAEKRQSFREHPIPILGTLWNTEIQAPPLQLRELKIGLELSQLPKSIEKLKYLEKIELTNFKGTLPEEFFHLRSLKDLRLRAGMTSLPDSLGNLTNLQYIDLSGCKHLQTLPVSFGNLRKLQHIGLSRCEDLQALPPSLGNLKYLQNLMLVGCEGLEKLPDSFMNLIRLKHLNLRECRNLTLSGQTLENIGTLERLDISHCKVEVLPAQVTHQQSLEELILDFTVLKELPSAIGNLRQVSSLSAAYCPIREVPFASVEKIQAGSRLLDPSIDKCMLRLxxxxxxxxxxITEISFAEGVCPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVGELNNIEDLNLTGCPISVVTVLPFVSVEELQGGRRLLDSCIDNCIMPRLRRLDLSKTRISEISFGEGVCPVLNWLRLRCCDALVEVGALPITLTILDLTGCCALKKITGLRGLSKLQYLYMRRCCAVEEMPGLETLSVQFFHSPESEDTDAVIWADASNRETLQTLFIRDQASSNLGAFRQFAQ

Protein Length: 707

Fln nts: GGAATCACTGGCCAAAGCTTCATATATAAGCGGTTTCGAGCTGGAGGCCTGTAATGGGTGCGCGGAATTAGCGTGGTTCAAAGGAGAGCCGGCGAATCATTTCAAAGTCAGGAGTTTGGGGTTCCTGACTTCAATATTAAAGGATTACAGCTGCTGAGAGCTCCTGCTGATTGTTTGGAAAGCTTATTCAATGTGATGACACAGCCAGAACTTTTATGGCTTCGTTGTGAGGTAGATTCATCTTCCTCCCTACCTTCCAACTGTATTCCAATAACGAATCTACGAGTCTTAGAATTGGTTGAAGCGGAGAAGCGGCAGTCATTTaGGGAACACCCAATCCCGATCTTGGGAACTTTGTGGAACACTGAAATCCAGGCACCTCCACTTCAGTTGAGGGAGTTGAAAATTGGTTTGGAACTTTCACAGTTACCAAAGTCCATAGAGAAATTGAAATATCTGGAAAAGATTGAACTGACCAACTTTAAAGGAACATTGCCGGAAGAGTTCTTTCATCTCCGCTCACTGAAAGACTTGAGACTCAGGGCAGGAATGACGTCGTTGCCAGACTCTTTGGGTAACCTCACAAATCTCCAATATATTGACTTGTCTGGGTGCAAGCATTTGCAAACATTGCCGGTTTCCTTTGGAAATTTAAGAAAGCTCCAACATATTGGCTTGTCTCGGTGCGAGGATTTGCAAGCACTGCCGCCATCCCTTGGAAATTTAAAATATCTTCAAAATCTTATGCTGGTGGGGTGTGAGGGGTTGGAAAAACTGCCAGATTCCTTCATGAACTTGATTCGACTCAAACATCTCAATTTGAGAGAGTGCCGCAACTTGACCCTCTCTGGCCAAACACTAGAGAATATCGGCACGCTGGAAAGGTTAGACATTTCTCATTGCAAAGTGGAAGTATTGCCTGCCCAAGTCACACATCAGCAGTCCCTGGAAGAGCTAATTTTGGATTTTACCGTGTTAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCATTTGCGAGTGTGGAGAAGATTCAAGCAGGCAGCAGATTGTTGGACCCCTCTATTGATAAGTGCATGCTTCGACTCAAATCCTTAACACTGCAGCAGACGAAAAATCACTGAAATATCATTTGCTGAAGGTGTTTGCCCAGTCCTTCAAGATCTCAATCTCAGTCATTGTGGTGATCTAGTGGAGGTTGGGGCATTGCCGGCAACACTAACATTCCTGGACTTGAATGGTTGTTGTGAATTGAAGAAAATAAAGGGGCTTCATGGCCTTGCAAATCTTCGATATTTGGGCATGAACGGGTGTATGCAAACAAAGGTGCTGCCAAATACGTGTGTCAGGGAGTTGAACAATCTTGAAGCCTTGCATTTAAAGCGTTGCCAGGGTAGGGTACTCAGAGTAATGCCATTTGTTGCCAATCAGGGTTCTGGTATGTTTCGACTCAAATCCTTAAACTTCTCGATGACGGCAGTGCGGGGGTGCTCATTCCCTGGAGGTGAGTTCCCAATCCTTAAATGGCTCGATCTCAGTGGTTGTCCTAATCTGAAGGAGGTTGGAGGATTGCCGACAGCACTAACGTCACTAGACTTGAATGATTGTCGCGCATTAAAGAAAATTAAGGGGCTTGGAGGCCTTGCAAGGCTTCGATATCTGGACATGGGCGGGTGTGAAGAAATAAAGGAGATACCAGGTCTGGATGTAGGGGAGTTGAACAACATTGAAGATTTGAATTTAACGGGATGCCCGATTAGTGTAGTCACTGTACTGCCATTTGTCAGTGTGGAAGAGCTTCAAGGAGGCCGCAGATTGTTGGACTCTTGTATTGACAACTGCATCATGCCTAGACTCAGACGGTTAGATCTGTCGAAGACGAGAATCTCTGAAATATCATTCGGTGAGGGTGTTTGCCCTGTCCTTAATTGGCTCCGTCTCCGTTGTTGTGATGCTCTAGTGGAGGTTGGAGCACTGCCAATAACACTAACAATACTGGACTTGACTGGTTGCTGTGCATTAAAGAAAATAACGGGGCTTCGTGGCCTTTCCAAGCTTCAGTATCTGTACATGAGAAGATGTTGTGCAGTTGAGGAGATGCCAGGTCTGGAAACGTTATCAGTGCAGTTCTTTCACTCTCCTGAATCTGAGGATACAGATGCAGTGATATGGGCTGACGCGTCAAATCGAGAAACCTTGCAAACCTTATTTATAAGAGATCAAGCGAGCTCCAACCTTGGTGCATTTAGGCAGTTCGCACAG

Fln Alignment:

sp_v1.1_unigene39___LPEEFFHLRSLKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRCCAVEEMPGLETL-SVQFFHSPESEDTDAV-IWADASNRET
A9P1B3____________LPDSFMNLIRLKHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCYTVEELPGLETLISVEVLLTPECENMKRIRELAEAANPES

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1258		83		16	0.994512
1422		66		33	0.997452
1964	10		90		0.90298
1965		90		10	0.90298
1966		90	10		0.90298
1967		90	10		0.90298
1968			10	90	0.90298
2036		12		87	0.992554
2044		87		12	0.992554
2224	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain