SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36

Length: 2459 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene36
AGTCCTTTCACGACCTTTAAGCGTCGTGACCTTGGCTGTCACTCAATACGTGGCAATCATCCTTTCAAAAGCAGCAATGCTGATTCCATGCGGTGATGGAAAGCTAGGGTTTTAACATCCAATCCTCTCCATCCTTCATTTTCCTTTTCGCATTCTGCAGTTATTGCTCCACCAGATTTATCAAGAGGGCGCTTCACATTGATGCTGGATCGAAGACTTGCCTGCAGAGTAGGAAAAATCGAAATCACAAGGTATTAATTTTGGCGCAGTTCTGTTGTATTTTGATAAAAATCCCCATTTTGATTGAAGGTAGGTTATCTGTTAGGAAAAAAGAGAAAACACACGGGTGTTTTTCTTCTGAATTTCTGCTGTAAAATTCCCCACTGGTTCGAATCTCTGCGACTGCAAAATGTTATCATCTCCAGGATTTTCGCCCCGGCACATATTGCCCTCGCCCTCACCCTCGCCTGCGCCTACGCCCTCAAGTCTTAACAAATCCTCTGATGATGGAAAAAAGGCTTTGCTCATGGGGCCTCCGGCTCCCAAGAAGAGGAAAAATCCCGAAACTGTATTAGATGAAGACACATACGTTGCAGCTCTTGAAAAAATCATTGAAAGGGATTTTTTCCCCGATTTGCCTAAGCTTCACGATCGCCTGGATTGGCTTGAAGCCGTCCGCAGCGGCGATCCATTACAAATCCGTGATGCCCAATTGAAGATTATTGAAAGGAGGCGAGGAAGGGTCAGCCAGGATCGAGCCCTTGTCACGCCAGCATCGTCGGTTGTGGATCCCTTTGGAACTCCTGCATCTCTTGTTGCCCCTTCTCCGGCACCGTCGTCAGTGAGATCGATGAGGTCTCCTAGTCAACATCCTTTGAGCCTGGACGCGGTTGGTGATTCGGACAACGAGTTGCCCGTCGACACCTCCATGTCTCTGGATGCGTTTTTGAAGCGCCACACTAGTGAGGATAATGAGAGTTTTTCAAAGATTATTGACAAAATGAACAAGAAGACGAGGGAGAAGTACCGCTACTTGCATGATGCCGAATCACAACCAGAGCAGAGCATTGCCGAAGAGAGTGATAGGATAACCGATGGTTTTGGTACCTCAGGGCAGCCTGAGAGCACATTGGTGAACTGGAAATATACAGCTAAGAATCTTCTTATGTACGATTCTGCGAATCGAGGAGAAGCACCTCTGACGAAGGTGGAAAGGGAAGACAGAGTTAAGGCATTGACAAAAGTGGTCAATACAAAGAATACGCGTTTTCATGGAAAGGTGCTGGATTCCAGGCCCAAAGAAGAAGACACTGTGGCCATACTCTATACGCCTGTTGTAGGTGGAACACCTGCATCTTGGCCTTTTGCAGAGCGTGACGCAGAGAGGGCGAAAAAAAGATATGATTTGGAGGATCTCCGTAAAACCCCCCAATTGGTATTAGGGGATTCGACTAAAGATGATTCAAATAAGGGCACAGCAGGCTACAGCTATGTGAGGACTCCATCGCCAGCTCCTGGAGTGGACGAGTCTCCATTCATCACATGGGGAGAAATAGAAGGAACTCCATTGAGATTAGAGACAGAGGATACCCCTGTTGGTATTGGGGGTGGTGGGGATGGCCCTCATTTCAAGATTCCACTTCCTCCATCCAGAGATGTAAAGGCTTACAACCTTTCAAGGGACGCAGCTCGTAATCTCAGAGAGAAATCTAGACTTTTCCAAAAGCCTCCACGTTCTCCTATATCTTCACGTAGTGGTTCTGCAAGTCCCAGTTTCAGTTTACTTTCAGCTGCTGCGCAGAAGTTTGTGAGGAATGCAATGGCCAAGTCCTGTAATTCTGTGGATGCGACTTTGAGAGCAAGCTACCGTGCTAGTCCATCTCCAGGGACTCCAAAAATGGGCAGGAATGCAGTCAGGTTTGACAGAGATGGGAGTTTACTGTCAAAATCTTCTATACTAAGGGAACGCAGTGATTCTGTCAGGTCACCCACTCCCGAAACATAAGGTTGAAAGCATTTTGGGAGTTGCTGTATTCAACTTTTAGGTTTTAAACTTACAATTTCCTGGCAGACTTTGGGAGTTATCTCAGCCAAAGATCAACTGGCATTACTCGCTACATTTGTCCTTCCAAAGGTGAGAATTGACATGTATAAGTTGAGCATGCAGCTCCATCTGTAATTTGTGGCTGTCCTCTTTATTGTTCTACTTTTGACAGTCATTAGCTGTTCAGATGTCATCGAGCATCAGAACATTGTACAAACCTCTGATGTAATATCTTAATATTGAAATGGGGCTCAAAAACGTTAAAATGCTTTTGAACTACTTCTAATTGCTTCAAGGTAGAAAATGGAAACCAATGATTCTAGCAGTAACAGTTGTTGATAAAAGGGAATTTTATATTTTAACCAAGTCAATGATTCTGATATGGCTTCATACTTGTTTCTGTTAGAGCCATATT

Ace file of the UniGene sp_v1.1_unigene36 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Es2 domain containing protein	-	-	35%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	54%
Blast2go	protein	-	-	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9TH42

Fln msg:

Fln protein: MLSSPGFSPRHILPSPSPSPAPTPSSLNKSSDDGKKALLMGPPAPKKRKNPETVLDEDTYVAALEKIIERDFFPDLPKLHDRLDWLEAVRSGDPLQIRDAQLKIIERRRGRVSQDRALVTPASSVVDPFGTPASLVAPSPAPSSVRSMRSPSQHPLSLDAVGDSDNELPVDTSMSLDAFLKRHTSEDNESFSKIIDKMNKKTREKYRYLHDAESQPEQSIAEESDRITDGFGTSGQPESTLVNWKYTAKNLLMYDSANRGEAPLTKVEREDRVKALTKVVNTKNTRFHGKVLDSRPKEEDTVAILYTPVVGGTPASWPFAERDAERAKKRYDLEDLRKTPQLVLGDSTKDDSNKGTAGYSYVRTPSPAPGVDESPFITWGEIEGTPLRLETEDTPVGIGGGGDGPHFKIPLPPSRDVKAYNLSRDAARNLREKSRLFQKPPRSPISSRSGSASPSFSLLSAAAQKFVRNAMAKSCNSVDATLRASYRASPSPGTPKMGRNAVRFDRDGSLLSKSSILRERSDSVRSPTPET*

Protein Length: 533

Fln nts: AGTCCTTTCACGACCTTTAAGCGTCGTGACCTTGGCTGTCACTCAATACGTGGCAATCATCCTTTCAAAAGCAGCAATGCTGATTCCATGCGGTGATGGAAAGCTAGGGTTTTAACATCCAATCCTCTCCATCCTTCATTTTCCTTTTCGCATTCTGCAGTTATTGCTCCACCAGATTTATCAAGAGGGCGCTTCACATTGATGCTGGATCGAAGACTTGCCTGCAGAGTAGGAAAAATCGAAATCACAAGGTATTAATTTTGGCGCAGTTCTGTTGTATTTTGATAAAAATCCCCATTTTGATTGAAGGTAGGTTATCTGTTAGGAAAAAAGAGAAAACACACGGGTGTTTTTCTTCTGAATTTCTGCTGTAAAATTCCCCACTGGTTCGAATCTCTGCGACTGCAAA_-_ATGTTATCATCTCCAGGATTTTCGCCCCGGCACATATTGCCCTCGCCCTCACCCTCGCCTGCGCCTACGCCCTCAAGTCTTAACAAATCCTCTGATGATGGAAAAAAGGCTTTGCTCATGGGGCCTCCGGCTCCCAAGAAGAGGAAAAATCCCGAAACTGTATTAGATGAAGACACATACGTTGCAGCTCTTGAAAAAATCATTGAAAGGGATTTTTTCCCCGATTTGCCTAAGCTTCACGATCGCCTGGATTGGCTTGAAGCCGTCCGCAGCGGCGATCCATTACAAATCCGTGATGCCCAATTGAAGATTATTGAAAGGAGGCGAGGAAGGGTCAGCCAGGATCGAGCCCTTGTCACGCCAGCATCGTCGGTTGTGGATCCCTTTGGAACTCCTGCATCTCTTGTTGCCCCTTCTCCGGCACCGTCGTCAGTGAGATCGATGAGGTCTCCTAGTCAACATCCTTTGAGCCTGGACGCGGTTGGTGATTCGGACAACGAGTTGCCCGTCGACACCTCCATGTCTCTGGATGCGTTTTTGAAGCGCCACACTAGTGAGGATAATGAGAGTTTTTCAAAGATTATTGACAAAATGAACAAGAAGACGAGGGAGAAGTACCGCTACTTGCATGATGCCGAATCACAACCAGAGCAGAGCATTGCCGAAGAGAGTGATAGGATAACCGATGGTTTTGGTACCTCAGGGCAGCCTGAGAGCACATTGGTGAACTGGAAATATACAGCTAAGAATCTTCTTATGTACGATTCTGCGAATCGAGGAGAAGCACCTCTGACGAAGGTGGAAAGGGAAGACAGAGTTAAGGCATTGACAAAAGTGGTCAATACAAAGAATACGCGTTTTCATGGAAAGGTGCTGGATTCCAGGCCCAAAGAAGAAGACACTGTGGCCATACTCTATACGCCTGTTGTAGGTGGAACACCTGCATCTTGGCCTTTTGCAGAGCGTGACGCAGAGAGGGCGAAAAAAAGATATGATTTGGAGGATCTCCGTAAAACCCCCCAATTGGTATTAGGGGATTCGACTAAAGATGATTCAAATAAGGGCACAGCAGGCTACAGCTATGTGAGGACTCCATCGCCAGCTCCTGGAGTGGACGAGTCTCCATTCATCACATGGGGAGAAATAGAAGGAACTCCATTGAGATTAGAGACAGAGGATACCCCTGTTGGTATTGGGGGTGGTGGGGATGGCCCTCATTTCAAGATTCCACTTCCTCCATCCAGAGATGTAAAGGCTTACAACCTTTCAAGGGACGCAGCTCGTAATCTCAGAGAGAAATCTAGACTTTTCCAAAAGCCTCCACGTTCTCCTATATCTTCACGTAGTGGTTCTGCAAGTCCCAGTTTCAGTTTACTTTCAGCTGCTGCGCAGAAGTTTGTGAGGAATGCAATGGCCAAGTCCTGTAATTCTGTGGATGCGACTTTGAGAGCAAGCTACCGTGCTAGTCCATCTCCAGGGACTCCAAAAATGGGCAGGAATGCAGTCAGGTTTGACAGAGATGGGAGTTTACTGTCAAAATCTTCTATACTAAGGGAACGCAGTGATTCTGTCAGGTCACCCACTCCCGAAACATAA___GGTTGAAAGCATTTTGGGAGTTGCTGTATTCAACTTTTAGGTTTTAAACTTACAATTTCCTGGCAGACTTTGGGAGTTATCTCAGCCAAAGATCAACTGGCATTACTCGCTACATTTGTCCTTCCAAAGGTGAGAATTGACATGTATAAGTTGAGCATGCAGCTCCATCTGTAATTTGTGGCTGTCCTCTTTATTGTTCTACTTTTGACAGTCATTAGCTGTTCAGATGTCATCGAGCATCAGAACATTGTACAAACCTCTGATGTAATATCTTAATATTGAAATGGGGCTCAAAAACGTTAAAATGCTTTTGAACTACTTCTAATTGCTTCAAGGTAGAAAATGGAAACCAATGATTCTAGCAGTAACAGTTGTTGATAAAAGGGAATTTTATATTTTAACCAAGTCAATGATTCTGATATGGCTTCATACTTGTTTCTGTTAGAGCCATATT

Fln Alignment:

sp_v1.1_unigene36___MLSSPGFSPRHILXXXXXXXXXXXXSLNK----SSDDGKKALLMGPPAPKKRKNPETVLDEDTYVAALEKIIERDFFPDLPKLHDRLDWLEAVRSGDPLQIRDAQLKIIERRRGRVSQDRALV-TPASSVVDPFGTXXXXXXXXXXXXXXXXXXXXSQHPLSLDAVGDSDNELPVDTSMSLDAFLKRHTSEDNESFSKIIDKMNKKTREKYRYLHDAES-QPEQSIAEESDRITDGFGTSGQPESTLVNWKYTAKNLLMYDSANRGEAPLTKVEREDRVKALTKVVNTKNTRFHGKVLDSRPKEEDTVAILYTPVVGGTPASWPFAERDAERAKKRYDLEDLRKTPQLVLGDSTKDDSNKGTAGYSYVRTPSPAPGVDESPFITWGEIEGTPLRLETEDTPVXXXXXXXGPHFKIPLPPSRDVKAYNLSRDAARNLREKSRLFQKXXXXXXXXXXXXXXXXXXXXXXXAQKFVRNAMAKSCNSVDATLRASYRASPSPGTPKMGRNAVRFDRDGSLLSKSSILRERSDSVR
A9TH42____________MLASPGHSPRHIEPPSPSPSTDSRAGYDALALASTSDRKLGFTS---AARKRKNSQIPLDEDTYVAAIEQIIERDFFPDIPKLRNRLEWLEAVRSGDPVIIRDAQMNIIRRRREKAREDGERDGTPSTNIPDTPASMISGLASPAVSLRSAASPSVSGLFPPTGSARDVDNGPSVDVNMKLDDFLRKYTSEDNASFSKILEKVNKQRKQKYEFLNEKGLVDPNLRIENANDRVTDGFGTSNQPFATLDTWKYRAKNLLMYDSAEREDVPLTQAEKEELVEGPPKSIEMKNTRFHGKMFDSKVREEDTVAILYTPVAGGTPQAWPFAQRDAERARKRYDLEDLRKTPQAL--DSQSKGVGHPGAGYSYVATPSPAPGVDESPFMTWGEIEGTPLRLEIEDTPVGIGGNGDGPHFKIPAPPTRDARAHALSRDAARSLREKAK-FRSSRFSPSPGRGPGQASPAPGFSAAAQKFMNKAMAKSSSSVDARLRASYGGSTTPGTPRLAQNAVR-SRSASVFSRDGSLPLRSPSVQ

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
347	14		85		0.999981
501	83			16	0.994512
722	75			25	0.996473
752		25		75	0.996473
808		20		80	0.995493
928			20	80	0.995493
930	20		20		0.99255
932	80			20	0.995493
936	20			80	0.995493
939		20		80	0.995493
941	20	80			0.995493
943		80	20		0.995493
944			20	80	0.995493
945		80		20	0.995493
948		20	80		0.995493
1366		75		25	0.996473
1367	83		16		0.994512
1368	16			83	0.994512
1369		83	16		0.994512
1370			83	16	0.994512
1372	16			83	0.994512
1373		16		83	0.994512
1375			16	83	0.994512
1378	16			83	0.994512
1384			16	83	0.994512
1386			16	83	0.994512
1451	20	80			0.995493
1542	14			85	0.993533
1545	85	14			0.993533
1547	14		85		0.993533
1550		85		14	0.993533
1551	85	14			0.993533
1554			14	85	0.993533
1896	60		40		1.0
1927	33		66		0.997452
1986	33	66			0.997452
2025	14	85			0.993533
2028	14		85		0.993533
2029		14	85		0.993533
2291			83	16	0.994512
2334			80	20	0.995493
2338	80			20	0.995493
2341		20	80		0.995493
2343			20	80	0.995493
2344		20		80	0.995493
2345		20	80		0.995493
2346	20		80		0.995493
2348			20	80	0.995493
2351		20		80	0.995493
2353	80	20			0.995493
2354	80		20		0.995493
2357		80	20		0.995493
2421			66	33	0.997452
2422		33	33		0.997753
2424	33		66		0.997452
2425		33		66	0.997452
2426			66	33	0.997452
2427	66			33	0.997452
2428		66		33	0.997452
2430			66	33	0.997452
2432	33	66			0.997452
2439	66	33			0.997452
2444		66		33	0.997452
2445	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain