SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33

Length: 3532 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene33
GTTTACAGTCAAATCTGATTTGCAAGGCATCAGATTTGTGAAGTTTCTCTGAAGGCACAGGTGATTCAACCTTTGGAAGGAAATTTCTTGTTGCCAAAGGTAGCATAATTTTAGACCATCTGGAATGGCTGTGTCAATGAAGAATCTCGATCCTGCATTTCAAGGAGTTGGTCAGAAAGCTGGTATAGATATCTGGCGCATTGAAAATTTTCAGCCAGTTCCTATACCAAAGGTTGACTATGGTAAATTTTATTCTGGAGATTCTTATATAGTTTTGCATACAAGTTCAGGAAAGAGTGGAAGTTATCAATATGATGTCCATTTCTGGCTTGGCAAGGACACTAGCCAGGATGAAGCTGGAACAGCAGCTATCAAGACTGTTGAACTTGATGCTGCCCTAGGAGGTCGTGCAGTGCAATACAGGGAATTGCAAGGCCATGAAACTGACAAATTTTTGTCATATTTCAAGCCTTGCATCATTCCCTTGGAAGGGGGCATATCTTCTGGATTCAAAAAGCCAGAGTCGATAAAATTTGAGCCACGCTTATATGTATGTAAAGGCAAACGAGTTGTACGAGTGAAGCAGGTTCCTTTTGCACGGTCTTCACTGAATCATGATGATGTTTTTCTTCTGGACACTGAATCGAAGGTCTATCAGTTCAATGGAGCTAATTCTAATATACAGGAAAGAGCAAAGGCTTTGGAAGTTGTTCAATACTTAAAAGATAAATATCATGACGGGATGTGTGAAGTTGCAGTGATTGATGATGGTAAGCTTGTAGCAGAAGCTGACTCTGGTGAGTTCTGGGGCCTCTTTGGAGGTTTTGCCCCCATTAGTAAGAGGAGTGGAAGTGAAGTTGACTCCCACATGAAGACTACTCCTGGAAAGATGTACAGTATTGTGGATGGACAACCAAAGAGCATTGAGGGACCTTTGTCTAGGGTGATGTTAGAGTCAAACAAATGCTATTTACTTGACTGTGGAGCTGAGATATATGTTTGGGTTGGTCGTGTGACCCAGTTAGAGGATAGGAAAGCTGCAAGTTCAGTTGCAGAGGAATTTATCACGGGTCAGAAAAGATCAAAGTATACACGAATAATACGGGTCATTCAGGGATTTGAGACACATCCTTTTAAATCAAATTTTGATTCATGGCCACTAGGTAGTGGAATTCCTGGCTCTGAAGATGGGAGAGGCAAAGTTGCTGCCTTACTGAAGCAGCAAGGAGTTGATGTAAAAGGAATTTTGAAGACAACTGCAGCAAAGGAGGAGTTTCCACCCTTGCTTGAAGGAAATGGAAAGCTGGAGGTATGGCGGGTCAATAATAATATTAAGACTCCCATTTCAAAAGAGGAGGTTGGTAAGTTTTATGGTGGAGATTGCTATGTCATTTTGTATACTTATCATTCTGGGGACCGAAAAGAAGATTACTATCTCTGCTTCTGGCTAGGGAAGCAGAGCATAACGGATGACCGAATGACTGCTGCTCGGTTAGTGAACACGATGGCAAACTCTTTAAAAGGAAAACCTGTACAGGGTCGTATTGTTCAAGGAAAAGAGCCTGCTGAATTTATTGGTCTCTTCCCAAACATGATAATTTTGAAGGGTGGATTGAGTACTGGCTATAAGAAGTCTGTTACTGATAAGGGTTTAAATGATGATACATATACCAGTGATTGCTTAGCACTAATTAGAGTGTCTGGTTCAGCGCCACATTTTAGTAAAGCAGTACAAGTTGACCCGGTGCCAGCATCTCTAAATTCTGCTGATTGCTTCTTGTTGCAATCTGGGTCATCATTTTTCATCTGGCACGGGAACTCCAGTTCATTGGAGCAACAACAACTAGCAACCAGATATGCAGACTTTCTGAGACCTGGTGTTAATTTAAAGCATGCAAAGGAAGGGACGGAAACAGCAGCTTTCTGGTATGCATTGGGTGGGAAGCAAAGCTATTCAAGCAAAAGAGACGCCCAGGAAACGAGCAGGGACCCTCATTTATATACTTGCACTTATGAAAAAGGAACATTGGAGGTCATTGAAGTCTTCAATTTCAGTCAAGATGACTTGTTAACAGAGGATATCATGATACTTGATACACATTCTGAGGTCTTTGTTTGGGTTGGCCAACATGTAGATATCAAACAAAAGCAGCAAGCTTTTGAGATTGGCCAGAAGTACATGGAACAGGCAGCACTGTTGGAAGGTTTATTGCCAGATATACCGCTTTACAAAGTTACAGAGGGGAATGAGCCTTCTTTCTTTACAAAGTTTTTTGCATGGGATTCAGCCAAAGCTGCTATTCAGGGAAACTCATTTCAGAAAAAGCTTGTTACTCTCCAAGGGATACCTATACAGGCTATAGAGAACTTAAAAAAGCAAGTCTCAACAACTGATGCTGGCTTGTCTGAGAGTCCAACACGTAGTTCTGACAGCTCCAATGGTTCAAAACAAAGTGGCCCAACTCAGAGAGCTTCAGCATTAGCTGCCCTGTCATCTGCTTTTGGTTCAAGCAGTGGGAGTAAAGCTGCACCACGAGCTACGAAGGCATCTATCTCTCCTTCCAATCAATCTTCTCAGAGAGCAGCGGCAGTTGCTGCATTATCCACAGTTTTGAATGCTGAACCTAAAAGAGTCTCACCCACAAGGACAATAGTAGGTGGTGACAAGAAATCATCCACAGCTGGGACAGCGTCAGCAGTGACAAACAATACATTGAGACCCCAAACTGAGGAGTTGCCTGTGAAAGATGGATCAACCACCCAAGATGAAACAAGTTTAGGAGAGTCTAATTCAGAGAGCAAAGAAGTTTCTGAGCCAAATGAGTTTGAAGCCAAGCAAGAAGAGAATGGAAATTCAGATACTTACAGTTATGAACGTTTGAGAACTAAATCCACTAATCCGGCTCCTGGAATCGACCATAAGAAAAGAGAGACTTACTTATCCCCAGAGGAGTTCCAGAAGGTTTTTGGTATGGACCAGAAGACATTCTCTGCGCAGCCTAAGTGGAAGCAAGATATGCGAAAAAAGTCTGTTGATTTGTTCTAGGCGTTCAAGCAATGGCGCTTTCATGAGAATAGATTACATTTTTCCCCTGCAAAATGGTGTATAAGATCTGCCGAAAAATGCTTAAGTTATTGTTTTTGCCTGGTCCAGAGATCGCACTCCAGATTGCTATGAGTAACAATAAGTACAATAGATTGCCAATCATTCTTTAATTTGTATACTAGTCTACGTTTTAGGTTTCTTTCAAATCATCCAATTCCACATTGCCCCTAAGTGTATCATCACATGTGCTTTTGTATTATGTTTGTGTGTTTGTTAGATGTCTCATTAAATTCCATGGCCATATCTGTAAATGGCATTTGTTAATATCTTCCTTCAGTCTAATTAGGTGGAAGCGACAGTTTGTACCATGTTGCCGAATCCCTTCATGGTATATGCCTTGGCAGTACATTGTGATAAAAGATGGCTTTTGAAGTTACAAGATTTTTCAGAATTTATGATAAAATATATCGAAACCATTTAACTTGC

Ace file of the UniGene sp_v1.1_unigene33

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	VLN3; VLN3 (VILLIN 3); actin binding	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	villin 2 protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL35

Fln msg: your sequence is longer than subject: 974 - 610

Fln protein: MAVSMKNLDPAFQGVGQKAGIDIWRIENFQPVPIPKVDYGKFYSGDSYIVLHTSSGKSGSYQYDVHFWLGKDTSQDEAGTAAIKTVELDAALGGRAVQYRELQGHETDKFLSYFKPCIIPLEGGISSGFKKPESIKFEPRLYVCKGKRVVRVKQVPFARSSLNHDDVFLLDTESKVYQFNGANSNIQERAKALEVVQYLKDKYHDGMCEVAVIDDGKLVAEADSGEFWGLFGGFAPISKRSGSEVDSHMKTTPGKMYSIVDGQPKSIEGPLSRVMLESNKCYLLDCGAEIYVWVGRVTQLEDRKAASSVAEEFITGQKRSKYTRIIRVIQGFETHPFKSNFDSWPLGSGIPGSEDGRGKVAALLKQQGVDVKGILKTTAAKEEFPPLLEGNGKLEVWRVNNNIKTPISKEEVGKFYGGDCYVILYTYHSGDRKEDYYLCFWLGKQSITDDRMTAARLVNTMANSLKGKPVQGRIVQGKEPAEFIGLFPNMIILKGGLSTGYKKSVTDKGLNDDTYTSDCLALIRVSGSAPHFSKAVQVDPVPASLNSADCFLLQSGSSFFIWHGNSSSLEQQQLATRYADFLRPGVNLKHAKEGTETAAFWYALGGKQSYSSKRDAQETSRDPHLYTCTYEKGTLEVIEVFNFSQDDLLTEDIMILDTHSEVFVWVGQHVDIKQKQQAFEIGQKYMEQAALLEGLLPDIPLYKVTEGNEPSFFTKFFAWDSAKAAIQGNSFQKKLVTLQGIPIQAIENLKKQVSTTDAGLSESPTRSSDSSNGSKQSGPTQRASALAALSSAFGSSSGSKAAPRATKASISPSNQSSQRAAAVAALSTVLNAEPKRVSPTRTIVGGDKKSSTAGTASAVTNNTLRPQTEELPVKDGSTTQDETSLGESNSESKEVSEPNEFEAKQEENGNSDTYSYERLRTKSTNPAPGIDHKKRETYLSPEEFQKVFGMDQKTFSAQPKWKQDMRKKSVDLF*

Protein Length: 975

Fln nts: GTTTACAGTCAAATCTGATTTGCAAGGCATCAGATTTGTGAAGTTTCTCTGAAGGCACAGGTGATTCAACCTTTGGAAGGAAATTTCTTGTTGCCAAAGGTAGCATAATTTTAGACCATCTGGA_-_ATGGCTGTGTCAATGAAGAATCTCGATCCTGCATTTCAAGGAGTTGGTCAGAAAGCTGGTATAGATATCTGGCGCATTGAAAATTTTCAGCCAGTTCCTATACCAAAGGTTGACTATGGTAAATTTTATTCTGGAGATTCTTATATAGTTTTGCATACAAGTTCAGGAAAGAGTGGAAGTTATCAATATGATGTCCATTTCTGGCTTGGCAAGGACACTAGCCAGGATGAAGCTGGAACAGCAGCTATCAAGACTGTTGAACTTGATGCTGCCCTAGGAGGTCGTGCAGTGCAATACAGGGAATTGCAAGGCCATGAAACTGACAAATTTTTGTCATATTTCAAGCCTTGCATCATTCCCTTGGAAGGGGGCATATCTTCTGGATTCAAAAAGCCAGAGTCGATAAAATTTGAGCCACGCTTATATGTATGTAAAGGCAAACGAGTTGTACGAGTGAAGCAGGTTCCTTTTGCACGGTCTTCACTGAATCATGATGATGTTTTTCTTCTGGACACTGAATCGAAGGTCTATCAGTTCAATGGAGCTAATTCTAATATACAGGAAAGAGCAAAGGCTTTGGAAGTTGTTCAATACTTAAAAGATAAATATCATGACGGGATGTGTGAAGTTGCAGTGATTGATGATGGTAAGCTTGTAGCAGAAGCTGACTCTGGTGAGTTCTGGGGCCTCTTTGGAGGTTTTGCCCCCATTAGTAAGAGGAGTGGAAGTGAAGTTGACTCCCACATGAAGACTACTCCTGGAAAGATGTACAGTATTGTGGATGGACAACCAAAGAGCATTGAGGGACCTTTGTCTAGGGTGATGTTAGAGTCAAACAAATGCTATTTACTTGACTGTGGAGCTGAGATATATGTTTGGGTTGGTCGTGTGACCCAGTTAGAGGATAGGAAAGCTGCAAGTTCAGTTGCAGAGGAATTTATCACGGGTCAGAAAAGATCAAAGTATACACGAATAATACGGGTCATTCAGGGATTTGAGACACATCCTTTTAAATCAAATTTTGATTCATGGCCACTAGGTAGTGGAATTCCTGGCTCTGAAGATGGGAGAGGCAAAGTTGCTGCCTTACTGAAGCAGCAAGGAGTTGATGTAAAAGGAATTTTGAAGACAACTGCAGCAAAGGAGGAGTTTCCACCCTTGCTTGAAGGAAATGGAAAGCTGGAGGTATGGCGGGTCAATAATAATATTAAGACTCCCATTTCAAAAGAGGAGGTTGGTAAGTTTTATGGTGGAGATTGCTATGTCATTTTGTATACTTATCATTCTGGGGACCGAAAAGAAGATTACTATCTCTGCTTCTGGCTAGGGAAGCAGAGCATAACGGATGACCGAATGACTGCTGCTCGGTTAGTGAACACGATGGCAAACTCTTTAAAAGGAAAACCTGTACAGGGTCGTATTGTTCAAGGAAAAGAGCCTGCTGAATTTATTGGTCTCTTCCCAAACATGATAATTTTGAAGGGTGGATTGAGTACTGGCTATAAGAAGTCTGTTACTGATAAGGGTTTAAATGATGATACATATACCAGTGATTGCTTAGCACTAATTAGAGTGTCTGGTTCAGCGCCACATTTTAGTAAAGCAGTACAAGTTGACCCGGTGCCAGCATCTCTAAATTCTGCTGATTGCTTCTTGTTGCAATCTGGGTCATCATTTTTCATCTGGCACGGGAACTCCAGTTCATTGGAGCAACAACAACTAGCAACCAGATATGCAGACTTTCTGAGACCTGGTGTTAATTTAAAGCATGCAAAGGAAGGGACGGAAACAGCAGCTTTCTGGTATGCATTGGGTGGGAAGCAAAGCTATTCAAGCAAAAGAGACGCCCAGGAAACGAGCAGGGACCCTCATTTATATACTTGCACTTATGAAAAAGGAACATTGGAGGTCATTGAAGTCTTCAATTTCAGTCAAGATGACTTGTTAACAGAGGATATCATGATACTTGATACACATTCTGAGGTCTTTGTTTGGGTTGGCCAACATGTAGATATCAAACAAAAGCAGCAAGCTTTTGAGATTGGCCAGAAGTACATGGAACAGGCAGCACTGTTGGAAGGTTTATTGCCAGATATACCGCTTTACAAAGTTACAGAGGGGAATGAGCCTTCTTTCTTTACAAAGTTTTTTGCATGGGATTCAGCCAAAGCTGCTATTCAGGGAAACTCATTTCAGAAAAAGCTTGTTACTCTCCAAGGGATACCTATACAGGCTATAGAGAACTTAAAAAAGCAAGTCTCAACAACTGATGCTGGCTTGTCTGAGAGTCCAACACGTAGTTCTGACAGCTCCAATGGTTCAAAACAAAGTGGCCCAACTCAGAGAGCTTCAGCATTAGCTGCCCTGTCATCTGCTTTTGGTTCAAGCAGTGGGAGTAAAGCTGCACCACGAGCTACGAAGGCATCTATCTCTCCTTCCAATCAATCTTCTCAGAGAGCAGCGGCAGTTGCTGCATTATCCACAGTTTTGAATGCTGAACCTAAAAGAGTCTCACCCACAAGGACAATAGTAGGTGGTGACAAGAAATCATCCACAGCTGGGACAGCGTCAGCAGTGACAAACAATACATTGAGACCCCAAACTGAGGAGTTGCCTGTGAAAGATGGATCAACCACCCAAGATGAAACAAGTTTAGGAGAGTCTAATTCAGAGAGCAAAGAAGTTTCTGAGCCAAATGAGTTTGAAGCCAAGCAAGAAGAGAATGGAAATTCAGATACTTACAGTTATGAACGTTTGAGAACTAAATCCACTAATCCGGCTCCTGGAATCGACCATAAGAAAAGAGAGACTTACTTATCCCCAGAGGAGTTCCAGAAGGTTTTTGGTATGGACCAGAAGACATTCTCTGCGCAGCCTAAGTGGAAGCAAGATATGCGAAAAAAGTCTGTTGATTTGTTCTAG___GCGTTCAAGCAATGGCGCTTTCATGAGAATAGATTACATTTTTCCCCTGCAAAATGGTGTATAAGATCTGCCGAAAAATGCTTAAGTTATTGTTTTTGCCTGGTCCAGAGATCGCACTCCAGATTGCTATGAGTAACAATAAGTACAATAGATTGCCAATCATTCTTTAATTTGTATACTAGTCTACGTTTTAGGTTTCTTTCAAATCATCCAATTCCACATTGCCCCTAAGTGTATCATCACATGTGCTTTTGTATTATGTTTGTGTGTTTGTTAGATGTCTCATTAAATTCCATGGCCATATCTGTAAATGGCATTTGTTAATATCTTCCTTCAGTCTAATTAGGTGGAAGCGACAGTTTGTACCATGTTGCCGAATCCCTTCATGGTATATGCCTTGGCAGTACATTGTGATAAAAGATGGCTTTTGAAGTTACAAGATTTTTCAGAATTTATGATAAAATATATCGAAACCATTTAACTTGC

Fln Alignment:

sp_v1.1_unigene33___MAVSMKNLDPAFQGVGQKAGIDIWRIENFQPVPIPKVDYGKFYSGDSYIVLHTSSGKSGSYQYDVHFWLGKDTSQDEAGTAAIKTVELDAALGGRAVQYRELQGHETDKFLSYFKPCIIPLEGGISSGFKKPESIKFEPRLYVCKGKRVVRVKQVPFARSSLNHDDVFLLDTESKVYQFNGANSNIQERAKALEVVQYLKDKYHDGMCEVAVIDDGKLVAEADSGEFWGLFGGFAPISKRSGSEVDSHMKTTPGKMYSIVDGQPKSIEGPLSRVMLESNKCYLLDCGAEIYVWVGRVTQLEDRKAASSVAEEFITGQKRSKYTRIIRVIQGFETHPFKSNFDSWPLGSGIPGSEDGRGKVAALLKQQGVDVKGILKTTAAKEEFPPLLEGNGKLEVWRVNNNIKTPISKEEVGKFYGGDCYVILYTYHSGDRKEDYYLCFWLGKQSITDDRMTAARLVNTMANSLKGKPVQGRIVQGKEPAEFIGLFPNMIILKGGLSTGYKKSVTDKGLNDDTYTSDCLALIRVSGSAPHFSKAVQVDPVPASLNSADCFLLQSGSSFFIWHGNSSSLEQQQLATRYADFLRPGVNLKHAKEGT
B8LL35____________MAVSMKNVDPAFQGVGQKVGTDIWRIENFRPVPIPKSDYGKFYCGDSYIVLQTTATKSGAYHYDIHFWLGKDTSQDEAGTAAIKTVELDAALGGRAVQYRELQGHETDKFLSYFKPCIIPLEGGAASGFRKPEITKFEPRLYVCKGRRVVRVKQVPFARTSLNHDDVFVLDTESKVYQFNGASSNIQERAKSLEVVQYIKDEYHEGKCDIAVIDDGKLVAESDSGEFWALFGGFAPIGKKNGSDDDSRMESTPGKLYSIVEGEIKIVEGPLSKGMLESNKCYLLDCGAEVYVWVGRVTQLEERKSASLTAEEFISNQKRPRNTHITRVIQGFETLPFRSNFDSWSLGTGTSGSEDGRGKVAALLKQQGINVKGILKATPLKEEIPPLLEGNGKLEVWRVKNVSKAPVPKEDIGKFYSGDCYIILYTYHSGDRKEDYFLCFWLGKQSTQEDQAVAARLTNTMANSLKGRPVQGRILEGKEPPQFIGLFPNMAILKGGLSAGYKKYITEKGINDETYNGDGIALIQVCGTGPHNSKAIQVDPVAESLNSCDCFLLQTGTSLFAWHGNSSALEQQLSVARIAEFLKPGTLLKAVKEGT

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
2766	50		50		1.0
2777	75	25			0.996473
2785	83			16	0.994512
2789	16		83		0.994512
2888	75		25		1.0
2931		90	10		0.90298
2932		90	10		0.90298
2992		88	11		0.923564
3185		16		83	0.994512
3292		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain