SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13

Length: 1776 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MSL2; MSL2 (MscS-LIKE 2); ion channel	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	49%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	plastid organization	GO:0009657	Biological Process	71%
Blast2go	ion channel activity	GO:0005216	Molecular Function	71%
Blast2go	plastid envelope	GO:0009526	Cellular Component	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9T613

Fln msg: your sequence is shorter than subject: 511 - 654

Fln protein: TLAGREIFTNFLSSVMIHATRPFVVSEWIQTKIDGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVSVVRNLTQKSHWRIKTHLAISHLDVSKIGNIVADMRKVLAKNHQVEQQRLHRRVFLDNIDPENQALLILVSCFVKTPHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKVYGDSETQNIPFEETIIRRGVPKMIESPKLTVEDKVKQRSLRSKEELNTVHPKAVSVEAKGTEPGVSSNENTKPSSLDGKNIHKQKEKEKDRDHAPSDLQPKMLDAVQTSHTKPSLEGLDSMGLNSKDITLLRAAFEKPPVIIPEAPRDPVIPKNENGNNEKNNARSEKNATTNEKSNSQVFEKQSYQNIKGGEKNGSKLSIEVDSSTIEINKGKANSVGELEIELRPEKNKQKGQGSSSVPSSKHENERSVNSASISRPLLKQNLPLGVALDGPKRTLPIEGEITSQVEQKELAPLRNGNSSSGVKDRREPQSPSSSSVHSDEKDQ*

Protein Length: 512

Fln nts: GACTCTTGCTGGTCGTGAGATATTTACCAATTTCCTGTCAAGTGTAATGATCCATGCAACTCGCCCTTTTGTTGTGAGTGAGTGGATTCAAACCAAGATCGACGGCTATGAAGTTTCTGGAACTGTGGAACATGTTGGTTGGTGGTCTCCGACTATTGTCAGAGGAGATGATCGGGAGGCTGTGCATATTCCAAATCACAAGTTCACTGTGAGTGTTGTTCGGAATCTTACTCAAAAGAGCCATTGGCGCATTAAGACTCATCTCGCTATCAGCCATCTAGATGTCAGCAAAATTGGTAATATTGTAGCTGATATGCGGAAAGTCTTAGCAAAAAATCATCAAGTGGAGCAACAACGGTTGCATCGAAGAGTATTTCTGGATAATATCGATCCAGAAAATCAGGCACTTTTGATTTTGGTTTCTTGCTTTGTAAAGACCCCCCACTTTGAAGAGTATCTTTGTGTTAAGGAAGCCATTTTATTGGACCTTCTAAGAGTTATCAGTCATCATCGTGCCCGATTGGCTACTCCAATCCGTACTGTACAGAAAGTATATGGTGACAGCGAGACACAGAATATACCATTTGAGGAAACCATAATCAGAAGAGGAGTGCCTAAGATGATTGAAAGTCCAAAATTAACTGTCGAGGATAAAGTAAAACAACGTTCTCTTCGTAGCAAGGAAGAGTTGAATACTGTTCATCCAAAGGCAGTGTCTGTAGAGGCTAAAGGGACTGAACCTGGAGTTTCTTCCAATGAGAATACAAAACCTAGTAGCTTGGATGGAAAGAATATTCACAAGCAGAAAGAGAAAGAGAAAGATAGGGACCATGCTCCTTCAGACTTGCAACCAAAGATGCTAGATGCAGTTCAAACATCACATACAAAGCCATCTCTTGAAGGTTTAGATTCAATGGGACTGAATTCCAAGGACATCACATTGCTTAGGGCAGCATTTGAGAAACCTCCAGTTATTATTCCTGAAGCACCCAGGGATCCTGTAATTCCAAAGAATGAGAATGGAAATAATGAGAAGAACAATGCAAGGAGTGAGAAGAATGCTACAACTAATGAGAAGTCAAACTCACAAGTTTTTGAAAAGCAATCATATCAAAATATTAAGGGAGGTGAAAAGAATGGGAGCAAGCTATCTATTGAAGTTGATAGTTCAACCATAGAAATAAATAAAGGTAAGGCCAACTCTGTAGGTGAATTGGAAATCGAACTAAGACCTGAGAAAAACAAACAAAAAGGCCAGGGGTCTTCCTCTGTACCATCTTCCAAGCATGAGAATGAACGATCTGTTAATTCTGCCTCAATCTCAAGACCTCTGCTGAAACAAAATTTACCTCTGGGTGTTGCTCTGGACGGGCCAAAAAGAACTCTTCCAATTGAGGGAGAAATTACTTCACAAGTGGAGCAGAAAGAACTTGCACCATTGCGAAATGGTAATAGTAGTTCTGGAGTCAAGGATAGGAGGGAACCTCAGTCACCATCCTCAAGCTCTGTTCATTCTGATGAAAAAGATCAGTAG___AGGTGATGACAGTAGTATCTGGTAACTTATAGAACCCTGGCATGTTTGTTAATTTACTAACTAATCCATCTTGTTAGGATGCCATAGAATGGGCAGAATAAAAGGGTAGTATCAGAGTTTTCTGAATGTCTTTTGAATCTGATCACTATATAGTATTCTTATATATTATATAGATTTGTAATATAAAGTATAATGATATTACTTGGGTCCAAAAATCAACGAATTAACTTACCCAAGCCTTT

Fln Alignment:

sp_v1.1_unigene13___TLAGREIFTNFLSSVMIHATRPFVVSEWIQTKIDGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVSVVRNLTQKSHWRIKTHLAISHLDVSKIGNIVADMRKVLAKNHQVEQQRLHRRVFLDNIDPENQALLILVSCFVKTPHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKVYGDSETQNIPFEETIIRRG-----VPKMIESP--KLTVEDKVKQRSLRSKEELNTVHPKAVSVEAKGTEPGVSSNENTKPSSLDGKNIHKQKEKEKDRDHAPSDLQPKMLDAVQTSHTKPSLEGLDSMGLNSKDITLLRAAFEKPPVIIPEAPRDPVIPXXXXXXXXXXXARSEKNATTNEKSNSQVFEKQSYQNIKGGEKNGSKLSIEVDSSTIEINKGKANSVGELEIELRPEKNKQKGQGSSSVPSSKHENERSVN-SASISRPLLKQNLPLGVALDGPKRTLPIEGEIT---SQVEQKELAPL-RNGNSS-SGVKDRREPQ
B9T613____________TLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVHKIHNIVADMRKVLAKNPQVEQQRLHRRVFLENINPENQALLILISCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYSDADLENIPFADSIYNRGGSASNRPLLLIEPSYRINGDDKAKSQT-RQGRGAGDQENKAASRSTPDTKAGVG------PKS-DSKTKEAPKSDAKVGETPNSDAKEHIKGAT-TSMSDPKVG--DKMSVKSS------------PNSVPK---------------------------TSNLAESSSPESKAAASVSDNVIQNKKIPDSKQSKSANPGNGRQNTQLDNPSVSLSDAGTEKASGLQESPQSKQGAERKSNGQSSTSRPSLEENIVLGVALEGSKRTLPIEEDMTPHPTQGEVKEMAAAGRNGNASPTGETDGKDGQ

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
111		12		87	0.992554
113	87			12	0.992554
114	87	12			0.992554
117			12	87	0.992554
118	12			87	0.992554
121			87	12	0.992554
123	87		12		0.992554
129		12	87		0.992554
130	12		87		0.992554
131	87	12			0.992554
132	87			12	0.992554
648		80		20	0.999996
726	10		90		0.90298
832	28	71			1.0
869		87	12		0.992554
1154	25	75			1.0
1240	88			11	0.923564
1241	88		11		0.923564
1481	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
804	822	AGAAAG AGAAAG AGAAAG A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain