SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8

Length: 2350 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8
ATGGGGATAAACCAAAGAACACAATTCAACAACATCGGGGACCTAACCTCTCTCAACTTGGTGAGAAAATTGAGGTGGTAGGTGACCATTTGACTGGAACACATGACGATCCTTCCCTTCTGAAACTCAAATGCAACAAAAGAGGCATATTCCTTTTTAAAAACAATACCAAACACGCAACATTTCAAGCAGAGTTACAAACAAGACACATTTCGAATCTCCACCAAACTGTCTCTCCTCTTCACAATAACACAGTAACAGGCATATGCTCTTGGTTCTGTCGCCCCCTATTTTTCCACTGCACTCGCTCCCTATTTAGGGATTCATTGCTTTACAATCTGCGATCCATTTCCTTATTTGGGTGACACTTCGATCTAATTTTGATCATGGCGTCCTCTGCATTGAGACTCTGTATGTCTTCGACAGTGGTCTCCAAGTCCCCAAATTCGAAAAACTCAACTCTATGGGGCGAGTCAGTGACCTTTTCATCGAAACCATCAGTACCCATGAAACATGAACGCCATTATTGCATAAGAGCTTCTGCTGCCACAACAGCACCATTGTCTCCGAGAATCGAAGCCCACAAGAGCTGCAAGGTAAAGTCTGTTAAGGCCAGACAGATTATAGACAGCAGGGGGAATCCCACAATTGAAGTGGATCTGCAGACTGATGATCAACTCTACAGATCTGCAGTGCCTAGTGGGGCATCTACTGGGATTTATGAGGCCCTAGAGATGAGAGACGGAGATAAATCTGTGTATGGAGGAAAGGGTGTTCTCAATGCTGTGAAGAATGTCAATGAGATTCTGGCTCCTCACTTGACTGGCCTCGATGTCAGGAATCAAAAAGAAGTGGATGCAATAATGTTGGAATTGGATGGAACAACCAACAAATCCAAATTAGGGGCCAATGCCATACTTGGAGTATCTCTGAGTATATGCAGAGCCGGTGCAGGAGCAGAAGGCATACCTCTGTATAAGCATATTCAGGGAATTGCTGGAACAAAGGAGCTTGTCATGCCAGTTCCAGCTTTTAATGTAATAAATGGAGGTAGTCATGCTGGCAACAAGCTCGCAATGCAGGAGTTCATGATCTTGCCTGTAGGAGCTGATTCTTTTACAGAAGCTATGCGCATGGGCAGCGAGGTATACCATGTCTTGAAGGGCATCATAAAGGCAAAATATGGGCAAGATGCATGCAATGTAGGAGATGAAGGAGGATTTGCTCCGAACATCCAAGATAACAGAGAAGGATTGGTTTTACTTCTTGATGCTATCGAGAAGGCTGGCTATACTGGCAAGGTAAAAATTGGAATGGATGTAGCAGCTTCAGAGTTTCTGACTAAAGATGGAAAATATGATTTAGATTTCAAAGAACAACCAAACAGTGGGACCAACTTGCACACTGGATTGAGTCTTGCTGAACTGTACAAGGAGTTTGTCAGAGACTTCCCAATTGTGTCCATTGAAGATCCTTTTGATCAAGATGACTGGAGCTCATGGGCAGCTCTTCAGTCAAAAGTTGACATACAGCTTGTAGGGGATGATTTGCTTGTGACAAACCCAAAGAGAATTGCCGAAGGAATTGAAAAGAAAGCTTGCAATGCTTTACTGCTGAAGGTGAATCAGATTGGTACTGTGACTGAATCCATCCAAGCGGCCCTTGACTCTAAAGCTGCTGGCTGGGGTGTCATGGTTAGCCATCGAAGTGGAGAGACCGAGGACAATTTTATTGCAGATTTGGCTGTTGGTCTAGCTAGTGGACAGATAAAAACAGGAGCACCTTGTCGTAGTGAGCGACTTGCCAAATATAATCAGCTCCTACGTATTGAAGAAGAGCTTGGCAGTGTGCGTTATGCTGGAGAGAGTTTTAGGCGTCCGTAGATTATACAAAACAAGTATTTTGTAGGTGATAGGACCATCATAGACTGCAATAAGGATTTGGAATTGTAAAGACACTTGAAATTTTTGAAGAGGTTAAGTAGTGGAGAAAGCTGTTTTACAAAATATCCAGTCCAATGCAAAGATGCATTATTTCGAACTACCTGAACAGCCACGTGAATTTGAGATATATGACGCAGTGGAAAAAGGTTTCTGTAGAGCTTTCCAAGCCTTTTAGGTTATATTGAGATCAATTGCAAACAGAGCAGAGGGAGGTTCTTAACATAGATGGAAGTATCTTCTATCTTGGTATTTCCGATGTACCCTCTCTCTCTCTCTCTTTCATATTTATTTTCAGTTCCTTTACTTAGGCACTATTGTTTTTTGGTTCCTTACTGTTATAAAAGACTGCCTGCTCTGAATTGTAACTCTCCAAGTTCCATCCTATATGATTATTTCATCTCATAAAC

Ace file of the UniGene sp_v1.1_unigene8

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Enolase n=1 Tax=Helianthus annuus RepID=A9P745_HELAN	-	-	82%
FL-Next	sp=Enolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphopyruvate hydratase.	EC:4.2.1.11	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	89%
Blast2go	Methane metabolism	00680	89%
Blast2go	Biosynthesis of phenylpropanoids	01061	89%
Blast2go	Biosynthesis of terpenoids and steroids	01062	89%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	89%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	89%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	89%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	89%
Blast2go	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Enolase	IPR000941	-	89%
Blast2go	Enolase, conserved site	IPR020809	-	89%
Blast2go	Enolase, C-terminal	IPR020810	-	89%
Blast2go	Enolase, N-terminal	IPR020811	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQR0

Fln msg: your sequence is longer than subject: 499 - 445

Fln protein: MASSALRLCMSSTVVSKSPNSKNSTLWGESVTFSSKPSVPMKHERHYCIRASAATTAPLSPRIEAHKSCKVKSVKARQIIDSRGNPTIEVDLQTDDQLYRSAVPSGASTGIYEALEMRDGDKSVYGGKGVLNAVKNVNEILAPHLTGLDVRNQKEVDAIMLELDGTTNKSKLGANAILGVSLSICRAGAGAEGIPLYKHIQGIAGTKELVMPVPAFNVINGGSHAGNKLAMQEFMILPVGADSFTEAMRMGSEVYHVLKGIIKAKYGQDACNVGDEGGFAPNIQDNREGLVLLLDAIEKAGYTGKVKIGMDVAASEFLTKDGKYDLDFKEQPNSGTNLHTGLSLAELYKEFVRDFPIVSIEDPFDQDDWSSWAALQSKVDIQLVGDDLLVTNPKRIAEGIEKKACNALLLKVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLAVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGSVRYAGESFRRP*

Protein Length: 500

Fln nts: ATGGGGATAAACCAAAGAACACAATTCAACAACATCGGGGACCTAACCTCTCTCAACTTGGTGAGAAAATTGAGGTGGTAGGTGACCATTTGACTGGAACACATGACGATCCTTCCCTTCTGAAACTCAAATGCAACAAAAGAGGCATATTCCTTTTTAAAAACAATACCAAACACGCAACATTTCAAGCAGAGTTACAAACAAGACACATTTCGAATCTCCACCAAACTGTCTCTCCTCTTCACAATAACACAGTAACAGGCATATGCTCTTGGTTCTGTCGCCCCCTATTTTTCCACTGCACTCGCTCCCTATTTAGGGATTCATTGCTTTACAATCTGCGATCCATTTCCTTATTTGGGTGACACTTCGATCTAATTTTGATC_-_ATGGCGTCCTCTGCATTGAGACTCTGTATGTCTTCGACAGTGGTCTCCAAGTCCCCAAATTCGAAAAACTCAACTCTATGGGGCGAGTCAGTGACCTTTTCATCGAAACCATCAGTACCCATGAAACATGAACGCCATTATTGCATAAGAGCTTCTGCTGCCACAACAGCACCATTGTCTCCGAGAATCGAAGCCCACAAGAGCTGCAAGGTAAAGTCTGTTAAGGCCAGACAGATTATAGACAGCAGGGGGAATCCCACAATTGAAGTGGATCTGCAGACTGATGATCAACTCTACAGATCTGCAGTGCCTAGTGGGGCATCTACTGGGATTTATGAGGCCCTAGAGATGAGAGACGGAGATAAATCTGTGTATGGAGGAAAGGGTGTTCTCAATGCTGTGAAGAATGTCAATGAGATTCTGGCTCCTCACTTGACTGGCCTCGATGTCAGGAATCAAAAAGAAGTGGATGCAATAATGTTGGAATTGGATGGAACAACCAACAAATCCAAATTAGGGGCCAATGCCATACTTGGAGTATCTCTGAGTATATGCAGAGCCGGTGCAGGAGCAGAAGGCATACCTCTGTATAAGCATATTCAGGGAATTGCTGGAACAAAGGAGCTTGTCATGCCAGTTCCAGCTTTTAATGTAATAAATGGAGGTAGTCATGCTGGCAACAAGCTCGCAATGCAGGAGTTCATGATCTTGCCTGTAGGAGCTGATTCTTTTACAGAAGCTATGCGCATGGGCAGCGAGGTATACCATGTCTTGAAGGGCATCATAAAGGCAAAATATGGGCAAGATGCATGCAATGTAGGAGATGAAGGAGGATTTGCTCCGAACATCCAAGATAACAGAGAAGGATTGGTTTTACTTCTTGATGCTATCGAGAAGGCTGGCTATACTGGCAAGGTAAAAATTGGAATGGATGTAGCAGCTTCAGAGTTTCTGACTAAAGATGGAAAATATGATTTAGATTTCAAAGAACAACCAAACAGTGGGACCAACTTGCACACTGGATTGAGTCTTGCTGAACTGTACAAGGAGTTTGTCAGAGACTTCCCAATTGTGTCCATTGAAGATCCTTTTGATCAAGATGACTGGAGCTCATGGGCAGCTCTTCAGTCAAAAGTTGACATACAGCTTGTAGGGGATGATTTGCTTGTGACAAACCCAAAGAGAATTGCCGAAGGAATTGAAAAGAAAGCTTGCAATGCTTTACTGCTGAAGGTGAATCAGATTGGTACTGTGACTGAATCCATCCAAGCGGCCCTTGACTCTAAAGCTGCTGGCTGGGGTGTCATGGTTAGCCATCGAAGTGGAGAGACCGAGGACAATTTTATTGCAGATTTGGCTGTTGGTCTAGCTAGTGGACAGATAAAAACAGGAGCACCTTGTCGTAGTGAGCGACTTGCCAAATATAATCAGCTCCTACGTATTGAAGAAGAGCTTGGCAGTGTGCGTTATGCTGGAGAGAGTTTTAGGCGTCCGTAG___ATTATACAAAACAAGTATTTTGTAGGTGATAGGACCATCATAGACTGCAATAAGGATTTGGAATTGTAAAGACACTTGAAATTTTTGAAGAGGTTAAGTAGTGGAGAAAGCTGTTTTACAAAATATCCAGTCCAATGCAAAGATGCATTATTTCGAACTACCTGAACAGCCACGTGAATTTGAGATATATGACGCAGTGGAAAAAGGTTTCTGTAGAGCTTTCCAAGCCTTTTAGGTTATATTGAGATCAATTGCAAACAGAGCAGAGGGAGGTTCTTAACATAGATGGAAGTATCTTCTATCTTGGTATTTCCGATGTACCCTCTCTCTCTCTCTCTTTCATATTTATTTTCAGTTCCTTTACTTAGGCACTATTGTTTTTTGGTTCCTTACTGTTATAAAAGACTGCCTGCTCTGAATTGTAACTCTCCAAGTTCCATCCTATATGATTATTTCATCTCATAAAC

Fln Alignment:

sp_v1.1_unigene8___VKSVKARQIIDSRGNPTIEVDLQ-TDDQLYRSAVPSGASTGIYEALEMRDGDKSVYGGKGVLNAVKNVNEILAPHLTGLDVRNQKEVDAIML-ELDGTTN-----KSKLGANAILGVSLSICRAGAGAEGIPLYKHIQGIAGTKELVMPVPAFNVINGGSHAGNKLAMQEFMILPVGADSFTEAMRMGSEVYHVLKGIIKAKYGQDACNVGDEGGFAPNIQDNREGLVLLLDAIEKAGYTGKVKIGMDVAASEFLT-KDGKYDLDFKEQPNSGTNLHTGLSLAELYKEFVRDFPIVSIEDPFDQDDWSSWAALQSKV--DIQLVGDDLLVTNPKRIAEGIEKKACNALLLKVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLAVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGSVR-YAGESFRRP
B8LQR0___________IKAVKARSIFDSRGNPTVEVDIHLSDGYLSRAAVPSGASTGVYEALELRDGGKD-YMGKGVSKAVGNVNKIIGPALIGKDPVDQTGIDNFMVQELDGTQNQWGWCKQKLGANAILAVSLAVCKAGAYVKKIPLYQHIANIAGNKTLVMPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMQMGSEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKIAIEKAGYTGKVVIGMDVAASEFYTEKDQKYDLNFKEENNNGSQKISGSELIKLYESFIEDYPIVSIEDPFDQDDWAHYAQFTATIGEKVQIVGDDLLVTNPKRVGKAINEKSCNALLLKVNQIGTVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSAAVYAGASFRQP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1889	97			2	0.97849
1891	95		4		0.999988
1892		95	4		0.999989
1893	94	3	1		0.924724
1894	96			3	0.989722
1895	96		3		0.989722
1899	94	3			0.951749
1900			96	3	0.991825
1901		3		96	0.991825
1950		4		96	0.99411
2113	8	91			0.999807
2278		80		20	0.995493
2306	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2206	2221	CT CT CT CT CT CT CT CT	16

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain