SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene167

Length: 1280 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene167

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oxidoreductase/ transition metal ion binding protein n=3 Tax=Arabidopsis RepID=D7MCM0_ARALY	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF3531	IPR021920	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ41

Fln msg:

Fln protein: MQSMQTIQHYAQFLLELTLWPGKRCGCFPSHRNTNAFKMKKTTSFSTPALHLTLNNFERWAVIKATKSNSRGEDELPEFEHDQDAASILMGQFDDPEKLRKRIEERIKKKKKDILQTKTGSAEPMIVTFKDFDFSDSCYIWIEFSHSPSNDELDLISGTIRSWYLLGHTGGYNSLNMQLTQLPINEVPSFDSVKASEELMSAFCNIGDLEIQDNLARIWVNIGTSDPLMLDVLINALQSLSSDYIGIKNLVLGGKFWGKWKEGSNSVEDGYKVCKI*

Protein Length: 278

Fln nts: ATGGGGAATTCTGGATAAGTCTATGGCAAATCTTGCGCTTGTTCCTTAATCCTAACCCGAAACA_-_ATGCAGAGTATGCAGACCATCCAACATTATGCTCAATTTTTACTGGAATTAACTCTCTGGCCCGGGAAGAGATGTGGCTGCTTTCCATCGCACAGAAATACAAATGCTTTCAAAATGAAGAAAACTACATCCTTTTCAACCCCAGCTTTGCATCTCACTCTCAATAATTTTGAGCGTTGGGCAGTCATAAAGGCAACAAAAAGCAACAGTCGCGGAGAAGACGAATTACCAGAATTTGAGCACGACCAGGACGCTGCAAGTATTCTCATGGGCCAATTTGACGACCCAGAGAAACTCCGCAAACGAATAGAGGAGAGGATTAAGAAAAAAAAGAAAGACATTTTGCAAACCAAGACTGGCTCTGCTGAGCCTATGATAGTTACTTTTAAAGACTTTGATTTTTCTGATTCGTGCTACATATGGATTGAGTTCAGCCATTCTCCTTCAAACGACGAGTTAGACCTCATCAGTGGTACAATACGGTCTTGGTATCTTCTTGGTCATACAGGAGGTTACAATTCTCTGAATATGCAGTTGACACAATTGCCAATAAATGAGGTGCCCAGTTTTGACTCTGTCAAAGCATCTGAAGAACTAATGTCTGCCTTCTGTAATATTGGCGATTTAGAGATTCAAGACAACTTGGCAAGGATTTGGGTTAATATTGGAACCTCCGATCCGTTGATGTTGGATGTGTTGATTAATGCTCTCCAATCTTTGAGCTCGGATTACATAGGGATCAAGAATCTGGTTCTTGGTGGAAAGTTTTGGGGAAAGTGGAAAGAAGGCTCAAACTCTGTAGAAGATGGATACAAAGTTTGCAAGATTTGA___AATGTCATTTAGATGGAAAAGGTCACAATGAGCCACATTCTAATATTTTCTCTTGTTGCCATTTTGTATTCTACCAGAAAATTACTATTGCATGCCATGCTCTTATGGTAATTGAGTTGAACGCCCTTGTTTCGAAAAGCCACTTACATTAGGACTACAAATTTTACAACGTTATATATTTATGCATTTCCTTCTTGTCTGTGGCAGTTACATAAGAATGAGCTCCTGGCACAAATTGCCAGGGGAATTGAAAGTGTGCATGACATCTGTAATAGGAGTATGGTTGCTTGTAAAAGATGAGATGCCATATAATTGCAGAAGTAACTGCAATAGCAGCAGTATTGCTATATAACCCTTTGCAAGTATTTCTACCGCATTACAGAAC

Fln Alignment:

sp_v1.1_unigene167___MQSMQTIQHYAQFLLELTLWPGKRCGCFPSHRNTNAFKMKKTTSFSTPALHLTLNNFERWAVIKATKSNSRGEDELPEFEHDQDAASILMGQFDDPXXXXXXXXXXXXXXXXXXXQTKTGSAEPMIVTFKDFDFSDSCYIWIEFSHSPSNDELDLISGTIRSWYLLGHTGGYNSLNMQLTQLPINEVPSFDSVKASEELMSAFCNIGDLEIQDNLARIWVNIGTSDPLMLDVLINALQSLSSDYIGIKNLVLGGKFWGKWKEGSNSVEDGYKVCKI
A9NZ41_____________MQSMQTIHHHAELHPKLSLWRGKRCGCFPSNTNTNDFKMKKIASFSTPALHLTHNIFERWAVIKATGDNDGREDKLAEFEHDPDAASILMGNFDDPEKLRKRIEERIKKKQKDILQTKTGSAEPMIVTFKEFDFSDSCYIWIEFSRSPSNNELDLISGAIRSWYLLGHIGGYNSMNMQLTQLPINEKPSFDSVKASEEITSAFYNIGDLELQDNLARIWVDTGTSDPLMLDVLINALQSLSSDYIGIKNLVFGGKHWGKWKEGSNSVEDGYKVCKI

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
219	14			85	0.993533
227	14			85	0.993533
268	57		42		1.0
306	14		85		0.993533
314	57	42			1.0
321		28		71	1.0
380			16	16	0.988813
401	75		25		0.996473
443	85	14			0.993533
445	85			14	0.993533
533	66		33		1.0
550			62	37	1.0
713	16		83		0.994512
714		83		16	0.994512
715	83		16		0.994512
716	83		16		0.994512
779		83	16		0.994512
780	83			16	0.994512
781	83		16		0.994512
782	16			83	0.994512
784		16		83	0.994512
792		83	16		0.994512
793			83	16	0.994512
794		16	83		0.994512
796		16		83	0.994512
798	83	16			0.994512
799	16	83			0.994512
969	20	80			0.999996
1011			16	83	0.994512
1013	83		16		0.994512
1101	16		83		0.994512
1158	83	16			0.994512
1159		16		83	0.994512
1160	16		83		0.994512
1162		83	16		0.994512
1176	20		80		0.995493
1177			20	80	0.995493
1224			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain