SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene123

Length: 2391 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene123
AAGTTTGTTCAACTCCTTACTCAAAGGATATCAAGAGGAGGTGGATAATATTACAAAGCGAGCAAAGTTTGGAGAAAATGCTTTCTTGAATATTTATCAGAAGCTATATGAAGCTCCTGACCCATGTCAAGCGCTGGCTTCAGCTACTGAGCTATCTTCAAAAGTTTCTGAACTTGAATCAGAGAATCGTAAAATGAAGCATGAGCTTGAAGATTTTAGGGCAGAAGCTGCTCATCTAAGGAACCAACAGGCCACTGTTCGGCGGCTAGAGGAACGCAATCGGCAGTTAGAGCAACAGATGGAAGAGAAGGTGAAGGAAATTGTAGAGATCAAGCAGCGAACCTTGGCTGAAGATAACCAGAAAACTCTGGAGGTTTTGAAAGAAAGGGAGATGCTACTACAAGAACAGCTGCGAGCAGCCAAGGAAAGTGTTTCAAATATGCAGAGATTACATGATTTTGGCCAAAGTCAGTTGTTTGAGTTCCGAGCTCAATCAGAGGAGGAGAGAGCAGCAAAGCAATCTGAGCTCAATCTTCTTACAGATGAGGTTGAGCGAGCTCAAGCACGATTATTAAGCCTGGAAAGGGAAAAGGAACAATTGCGATCACAACTTCAAGTGGTTCACAGTCAGGAAACTGAACATAAGGAAAGAGAAGACCTGGATTCAAGCAACACCCTTGAGGCTTCTTTAAGTGCAAAGGAGAAGTTCATTTCAGAGCTGCATACAGAACTTCATAAATTGGAAATAGCATTGTCAAATGAGCGAGAACAACACTTACTTGAGATTAAGAAGCTGAATACTCTTCTAATTGAAAAGGCAACAATTATTGAGGAGATGCAAAAGGAGCTGCAGGAAAGGCCAACAGCTAAGCAAGTGGAAGACCTTCGTAAGCAAGTTAAAATATTACAGGCTGTGGGTTATAATTCTATTGAGGCTGAAGATTGGGAGGTGGCTACTAGGGGCGAGGACATGACCAAATTAGAGACATTGTTACTTGACAAAAATAGGAAAATGGAACATGAGCTAACTCAATTGAAGATCAAACTTTCTGAAAAGACAAGCACAGCTGAGGCTTCTGAAGCTAGAGTGAAGGAGCTTGGTATGAAGGTGGATGAACAACAGAAACTAATTTCAAAGCTGGAAGAAGACATATTAAAGGGATATAGCTCAGTGGATCGACGAGTGACAAAAGCAGATGATTGGGACCTGCCAGAACTTGGAATTGCAGAAATCCTTGAGAAAACTGACTTCAGAAAGGGTCAAGCAGATGAGGAGCAGAAATCAATGCTACAGGTGATTTGTAGCCAACGTGACAGATTCCGGCAACGTCTAAGGGAAGCTGAAGAGGATCTAAGACTAGCCCAAGAGAAAAACAAGGCCCTTGTAGCAGATCTGGAAAAGAGTAAAGCAGATAATGTTAAGCTGTATGAGAAAATTCGTTACATACAAGATTATACAAAGGATTGGCCTCTCTCTCGGGGACAGAGAAAGCGTGCTGATGATGTAGAGAGTGGGTTCAGTTCAGATATAGAATCGAAATACAAGAAGATATATGAAGATGACATAAACCCTTTTGCTGCTTTTTCAAAGAAGGAAAAGGAGCGTAGATACAAGGAACTTGGAATAAGAGACAAAATTACACTCACAAGTGGGCGTTTCCTTCTTGGCAACAAATATGCCCGGACTTTTATCTTCTTCTACTCCATTGGTCTTCATCTTCTTGTTTTTACCAGTCTATATAGAATGTCGGCTCTAAGTTACCACAGCATTGCTAAAAGTGGAGTTTTGGAATCTGAGAAGAATGCTGTAAAATTTCATAACATGACCATGCCTCATTCCACTTCAGATAAACTATAACTGACAGCTGGAACCAAACGTGGCCCTATCTGGACCTAAGTCCATTGTAGTCTAGCATCTGTTGACTACTGATTTTCTTGGGACTTGACTCCTGCCAGCTTCAAGTTCTTTGATCTGGAGATATGTAAACCAGATCTGTACATAACGTTGAATATAATTAGCAGGTAGTAGATCTGAAGTGAAATGTCACTTACAAAATGTATTGGCTTCCAGTGAACTAAGATCAAACAAAGAAGATTCTGGAATTAACATCAGATTATTTGGAATTCAGTGAATTATGCAGAAATTCATAAATAACGGATTCTGCACTTATTGGATTTACTGTTGCTATGGTGTACCATAATCATATTCATTATTCTTTAGAAATTTCAATTTATAGATTCCTTAAATCTTTACGTCTGGAAGAGATTGACTGCTGCATTTTGTGTAGAATTAAGCAAGCAGGAATTCTAAAATTTGTAACTGGAATTTTAGAATTGGCTCAGTGAAGCTCTGTTGTTTGATACAATTCCATTCATATTTTTGATGATTAG

Ace file of the UniGene sp_v1.1_unigene123

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein CASP, putative n=1 Tax=Ricinus communis RepID=B9RE25_RICCO	-	-	66%
FL-Next	sp=Protein CASP; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	76%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LS42

Fln msg: your sequence is shorter than subject: 619 - 689

Fln protein: SLFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEAPDPCQALASATELSSKVSELESENRKMKHELEDFRAEAAHLRNQQATVRRLEERNRQLEQQMEEKVKEIVEIKQRTLAEDNQKTLEVLKEREMLLQEQLRAAKESVSNMQRLHDFGQSQLFEFRAQSEEERAAKQSELNLLTDEVERAQARLLSLEREKEQLRSQLQVVHSQETEHKEREDLDSSNTLEASLSAKEKFISELHTELHKLEIALSNEREQHLLEIKKLNTLLIEKATIIEEMQKELQERPTAKQVEDLRKQVKILQAVGYNSIEAEDWEVATRGEDMTKLETLLLDKNRKMEHELTQLKIKLSEKTSTAEASEARVKELGMKVDEQQKLISKLEEDILKGYSSVDRRVTKADDWDLPELGIAEILEKTDFRKGQADEEQKSMLQVICSQRDRFRQRLREAEEDLRLAQEKNKALVADLEKSKADNVKLYEKIRYIQDYTKDWPLSRGQRKRADDVESGFSSDIESKYKKIYEDDINPFAAFSKKEKERRYKELGIRDKITLTSGRFLLGNKYARTFIFFYSIGLHLLVFTSLYRMSALSYHSIAKSGVLESEKNAVKFHNMTMPHSTSDKL*

Protein Length: 620

Fln nts: AAGTTTGTTCAACTCCTTACTCAAAGGATATCAAGAGGAGGTGGATAATATTACAAAGCGAGCAAAGTTTGGAGAAAATGCTTTCTTGAATATTTATCAGAAGCTATATGAAGCTCCTGACCCATGTCAAGCGCTGGCTTCAGCTACTGAGCTATCTTCAAAAGTTTCTGAACTTGAATCAGAGAATCGTAAAATGAAGCATGAGCTTGAAGATTTTAGGGCAGAAGCTGCTCATCTAAGGAACCAACAGGCCACTGTTCGGCGGCTAGAGGAACGCAATCGGCAGTTAGAGCAACAGATGGAAGAGAAGGTGAAGGAAATTGTAGAGATCAAGCAGCGAACCTTGGCTGAAGATAACCAGAAAACTCTGGAGGTTTTGAAAGAAAGGGAGATGCTACTACAAGAACAGCTGCGAGCAGCCAAGGAAAGTGTTTCAAATATGCAGAGATTACATGATTTTGGCCAAAGTCAGTTGTTTGAGTTCCGAGCTCAATCAGAGGAGGAGAGAGCAGCAAAGCAATCTGAGCTCAATCTTCTTACAGATGAGGTTGAGCGAGCTCAAGCACGATTATTAAGCCTGGAAAGGGAAAAGGAACAATTGCGATCACAACTTCAAGTGGTTCACAGTCAGGAAACTGAACATAAGGAAAGAGAAGACCTGGATTCAAGCAACACCCTTGAGGCTTCTTTAAGTGCAAAGGAGAAGTTCATTTCAGAGCTGCATACAGAACTTCATAAATTGGAAATAGCATTGTCAAATGAGCGAGAACAACACTTACTTGAGATTAAGAAGCTGAATACTCTTCTAATTGAAAAGGCAACAATTATTGAGGAGATGCAAAAGGAGCTGCAGGAAAGGCCAACAGCTAAGCAAGTGGAAGACCTTCGTAAGCAAGTTAAAATATTACAGGCTGTGGGTTATAATTCTATTGAGGCTGAAGATTGGGAGGTGGCTACTAGGGGCGAGGACATGACCAAATTAGAGACATTGTTACTTGACAAAAATAGGAAAATGGAACATGAGCTAACTCAATTGAAGATCAAACTTTCTGAAAAGACAAGCACAGCTGAGGCTTCTGAAGCTAGAGTGAAGGAGCTTGGTATGAAGGTGGATGAACAACAGAAACTAATTTCAAAGCTGGAAGAAGACATATTAAAGGGATATAGCTCAGTGGATCGACGAGTGACAAAAGCAGATGATTGGGACCTGCCAGAACTTGGAATTGCAGAAATCCTTGAGAAAACTGACTTCAGAAAGGGTCAAGCAGATGAGGAGCAGAAATCAATGCTACAGGTGATTTGTAGCCAACGTGACAGATTCCGGCAACGTCTAAGGGAAGCTGAAGAGGATCTAAGACTAGCCCAAGAGAAAAACAAGGCCCTTGTAGCAGATCTGGAAAAGAGTAAAGCAGATAATGTTAAGCTGTATGAGAAAATTCGTTACATACAAGATTATACAAAGGATTGGCCTCTCTCTCGGGGACAGAGAAAGCGTGCTGATGATGTAGAGAGTGGGTTCAGTTCAGATATAGAATCGAAATACAAGAAGATATATGAAGATGACATAAACCCTTTTGCTGCTTTTTCAAAGAAGGAAAAGGAGCGTAGATACAAGGAACTTGGAATAAGAGACAAAATTACACTCACAAGTGGGCGTTTCCTTCTTGGCAACAAATATGCCCGGACTTTTATCTTCTTCTACTCCATTGGTCTTCATCTTCTTGTTTTTACCAGTCTATATAGAATGTCGGCTCTAAGTTACCACAGCATTGCTAAAAGTGGAGTTTTGGAATCTGAGAAGAATGCTGTAAAATTTCATAACATGACCATGCCTCATTCCACTTCAGATAAACTATAA___CTGACAGCTGGAACCAAACGTGGCCCTATCTGGACCTAAGTCCATTGTAGTCTAGCATCTGTTGACTACTGATTTTCTTGGGACTTGACTCCTGCCAGCTTCAAGTTCTTTGATCTGGAGATATGTAAACCAGATCTGTACATAACGTTGAATATAATTAGCAGGTAGTAGATCTGAAGTGAAATGTCACTTACAAAATGTATTGGCTTCCAGTGAACTAAGATCAAACAAAGAAGATTCTGGAATTAACATCAGATTATTTGGAATTCAGTGAATTATGCAGAAATTCATAAATAACGGATTCTGCACTTATTGGATTTACTGTTGCTATGGTGTACCATAATCATATTCATTATTCTTTAGAAATTTCAATTTATAGATTCCTTAAATCTTTACGTCTGGAAGAGATTGACTGCTGCATTTTGTGTAGAATTAAGCAAGCAGGAATTCTAAAATTTGTAACTGGAATTTTAGAATTGGCTCAGTGAAGCTCTGTTGTTTGATACAATTCCATTCATATTTTTGATGATTAG

Fln Alignment:

sp_v1.1_unigene123___SLFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEAPDPCQALASATXXXXXXXXXXXXNRKMKHELEDFRAEAAHLRNQQATVXXXXXXXXXXXXXXXXXXXXXXXXXXRTLAEDNQKTLEVLKEREMLLQEQLRAAKESVSNMQRLHDFGQSQLFEFRAQSEEERAAKQSELNLLTDEVERAQARLLSLEREKEQLRSQLQVVHSQETEHKEREDLDSSNTLEASLSAKEKFISELHTELHKLEIALSNEREQHLLEIKKLNTLLIEKATIIEEMQKELQERPTAKQVEDLRKQVKILQAVGYNSIEAEDWEVATRGEDMTKLETLLLDKNRKMEHELTQLKIKLSEKTSTAEASEARVKELGMKVDEQQKLISKLEEDILKGYSSVDRRVTKADDWDLPELGIAEILEKTDFRKGQADEEQKSMLQVICSQRDRFRQRLREAEEDLRLAQEKNKALVADLEKSKADNVKLYEKIRYIQDYTKDWPLSRGQRKRADDVESGFSSDIESKYKKIYEDDINPFAAFSKKEKERRYKELGIRDKITLTSGRFLLGNKYARTFIFFYSIGLHLLVFTSLYRMSALSYHSIAKSGVLESE
Q9LS42_____________SMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEAPDPFPALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQNQLFELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTAN-EDTDNKKSDNIDSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEMKKELQERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEEMSKMESLLLDKNRKMEHEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDDILKGYGSKERKGALFDEWEFSEAGVAEQSEPMDQKHVPSEQDQSSMLKVICSQRDRFRARLRETEEEIRRLKEKIGFLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLESGFSSDVESKYKKIYEDDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLVFTCLYRMSAYSYLSHGAEETLMTE

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
14		75		25	0.996473
302			87	12	0.992554
304	87	12			0.992554
307	87			12	0.992554
319	87	12			0.992554
320	87	12			0.992554
563	50		50		1.0
948	11		88		0.923564
950			88	11	0.923564
953		11	77	11	0.968132
958		88	11		0.923564
962			88	11	0.923564
964	11		88		0.923564
970	88	11			0.923564
1279	85		14		0.993533
1395		50		50	1.0
1614	83		16		0.994512
1615	83			16	0.994512
1619	83	16			0.994512
1625	83	16			0.994512
1628	83		16		0.994512
1629	83			16	0.994512
1630		16	83		0.994512
1632		16	83		0.994512
1633	83			16	0.994512
1706	83	16			0.994512
2104	62		37		1.0
2110	37			62	1.0
2277		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain