SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15

Length: 1994 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene15
ATGGCGATGCACGGAATGGTGGGGGTGGTCAGTGAATGAATGAATGGCTTCGTCCCACCAATTCCAAATTTCATGGCTGCTCACACGGAGACCGTTGGGAGACGCCCATTTGCGTTTATATCAGTTGCCCCACAAGCCCACAAAAGAGCAGAGGAAAAATTATGACAATTGCAGCTGCTGGGCACAGAGGAGAAGAGAGGCAGCTGTCGCTGCAGCAATTAGAATTAATGGTGAGCGTAAGTTCATGTTCACGGGGTTTGGCAGGCAAAGGCCAAGGCGAAGTCATGAAATAATAATGGTGAAAGCCGTTGAAAAGGACGCCAGAGGCCTCCCGGATGGCTCCCTCAATGTGGGTCGTGTGCTGCATTTGGTGGTTTCGTTGGGCATAATTCTGGCCATCGACAAGGCCTTGAAAAGGGTCTTCACGGCTGCCATGATAAAGTTCCCTAGCTCATTGTTTGGAATGTTCTGCATATTTTCCGTGCTGTCGATCCTCGACGTCATCAGACCGGCAGCGGCAACGGCTCTACTGAACTTTTTTGAGCCGGCAACGACGTTCATACAGAGATGGCTTCCGCTCTTCTACGTGCCGTCGCTGGTAGTGTTGCCCTTAGCTGTGAAGGGAATCCCTGCTTCTTCCGGAATGAAGATTGGCGCAATTCTTGTTGGAGGCTGGGCAGCATCACTCTATGTTGCGGGGTACACAGCCATTGCCGTAAGAAAGATGGTCAGAACAAAAATGATAGCAGCAGAGCCAATGCCAAAGCCTTCTCCTTTTTCAAGAAGAGAGATTTGGTTCTGGACTATTATCTTGTCAGTTTCGTTTATATTGACTGTTCTTTCACCCCTTGCATTTGGAACTTATGCTCGAACATGCCTTCCGTTTCTTTTAGCGGCAACTGCGTTAGGATTCATCCTTGGATCTGGATTTCCACCTACTGCCAAGAAGCTACTACATCCAATTATTACGTGTGCCCTATCTGCGGATTTGGCAGCCTTTGCTTGTGGAACCTCCACAGGATTGGGCTTTGAATCCACGCTAGGGGCCTACTTAACTAAAAGTGCAACCAATCCTGGTGCTGGTGATATTTTGATGGGATTTCTTGGATCTGTGATTCTTTCATTCGCTTTCTCAATGTTTCGTCAGAGGAAGCTTGTCAAACGGCATGCTGCGGAGATCTTCTCAGCTGTGGTGGCTTCAACAATTTTTTCTCTGTACTCAACAGCAGCTATGGGCCGAGTGATTGGACTGGAACCAACCTTAACTGTTTCCATTTTGCCACGATGTATTACTGTTGCACTAGCATTGAGCATTGTCTCGCTTTTTGATGCTGCAAATCCTTCCCTTACAGCAGCTGTCGTGGTTTTAACGGGACTGGTTGGAGCAAATTTTGCACAAATATTGCTCGACAAGCTTGGTTTGGATGATCCTATTGCACGAGGAATGGCTACAGCCTCCAGTGCTCATGGATTGGGAACGGCTGCACTATCAGCAAAAGAACCAGAAGCGTTGCCTTTCTGTGCAATTGCCTATGCATTAACTGGTATTTTTGGGTCATTATTGTGTTCCGTTCCAGCTGTGCGCCAGAGTCTACTACTGATAGTAGGTTGAGAGAACCGGCAAATCAGATATTCAAATTGTAATGGAACATGTTCACATTGTAAATACAGGTATCTCCAATCATGTAGAAGACTTGTAAATTGTTTGTCCCGTGGATGCTCTAATTGTTATGAATCCCATAACCATAGCAGCTAAAAATGACCATCTCATGGGAGAAGTAAGTTGTTTCAATATTTTTCTTTAGGGTCTGGGTCAATGTTTGCCTACCTTGTATTAAAGAAATTGTAACATAGCAATTCACATTTGAAAATGCTTGCCATACATGACTCCAGACTTCTGAGCTTTTTAAGAGCAACATATGCATTGCTATTTTCATCCAAAAGTTCAAACCTTTCAAGTTTATATATAAAATTCTCCAACCATATGTTTGTAT

Ace file of the UniGene sp_v1.1_unigene15 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lrgB-like family protein	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	72%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HMP8

Fln msg:

Fln protein: MASSHQFQISWLLTRRPLGDAHLRLYQLPHKPTKEQRKNYDNCSCWAQRRREAAVAAAIRINGERKFMFTGFGRQRPRRSHEIIMVKAVEKDARGLPDGSLNVGRVLHLVVSLGIILAIDKALKRVFTAAMIKFPSSLFGMFCIFSVLSILDVIRPAAATALLNFFEPATTFIQRWLPLFYVPSLVVLPLAVKGIPASSGMKIGAILVGGWAASLYVAGYTAIAVRKMVRTKMIAAEPMPKPSPFSRREIWFWTIILSVSFILTVLSPLAFGTYARTCLPFLLAATALGFILGSGFPPTAKKLLHPIITCALSADLAAFACGTSTGLGFESTLGAYLTKSATNPGAGDILMGFLGSVILSFAFSMFRQRKLVKRHAAEIFSAVVASTIFSLYSTAAMGRVIGLEPTLTVSILPRCITVALALSIVSLFDAANPSLTAAVVVLTGLVGANFAQILLDKLGLDDPIARGMATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLLCSVPAVRQSLLLIVG*

Protein Length: 524

Fln nts: ATGGCGATGCACGGAATGGTGGGGGTGGTCAGTGAATGAATGA_-_ATGGCTTCGTCCCACCAATTCCAAATTTCATGGCTGCTCACACGGAGACCGTTGGGAGACGCCCATTTGCGTTTATATCAGTTGCCCCACAAGCCCACAAAAGAGCAGAGGAAAAATTATGACAATTGCAGCTGCTGGGCACAGAGGAGAAGAGAGGCAGCTGTCGCTGCAGCAATTAGAATTAATGGTGAGCGTAAGTTCATGTTCACGGGGTTTGGCAGGCAAAGGCCAAGGCGAAGTCATGAAATAATAATGGTGAAAGCCGTTGAAAAGGACGCCAGAGGCCTCCCGGATGGCTCCCTCAATGTGGGTCGTGTGCTGCATTTGGTGGTTTCGTTGGGCATAATTCTGGCCATCGACAAGGCCTTGAAAAGGGTCTTCACGGCTGCCATGATAAAGTTCCCTAGCTCATTGTTTGGAATGTTCTGCATATTTTCCGTGCTGTCGATCCTCGACGTCATCAGACCGGCAGCGGCAACGGCTCTACTGAACTTTTTTGAGCCGGCAACGACGTTCATACAGAGATGGCTTCCGCTCTTCTACGTGCCGTCGCTGGTAGTGTTGCCCTTAGCTGTGAAGGGAATCCCTGCTTCTTCCGGAATGAAGATTGGCGCAATTCTTGTTGGAGGCTGGGCAGCATCACTCTATGTTGCGGGGTACACAGCCATTGCCGTAAGAAAGATGGTCAGAACAAAAATGATAGCAGCAGAGCCAATGCCAAAGCCTTCTCCTTTTTCAAGAAGAGAGATTTGGTTCTGGACTATTATCTTGTCAGTTTCGTTTATATTGACTGTTCTTTCACCCCTTGCATTTGGAACTTATGCTCGAACATGCCTTCCGTTTCTTTTAGCGGCAACTGCGTTAGGATTCATCCTTGGATCTGGATTTCCACCTACTGCCAAGAAGCTACTACATCCAATTATTACGTGTGCCCTATCTGCGGATTTGGCAGCCTTTGCTTGTGGAACCTCCACAGGATTGGGCTTTGAATCCACGCTAGGGGCCTACTTAACTAAAAGTGCAACCAATCCTGGTGCTGGTGATATTTTGATGGGATTTCTTGGATCTGTGATTCTTTCATTCGCTTTCTCAATGTTTCGTCAGAGGAAGCTTGTCAAACGGCATGCTGCGGAGATCTTCTCAGCTGTGGTGGCTTCAACAATTTTTTCTCTGTACTCAACAGCAGCTATGGGCCGAGTGATTGGACTGGAACCAACCTTAACTGTTTCCATTTTGCCACGATGTATTACTGTTGCACTAGCATTGAGCATTGTCTCGCTTTTTGATGCTGCAAATCCTTCCCTTACAGCAGCTGTCGTGGTTTTAACGGGACTGGTTGGAGCAAATTTTGCACAAATATTGCTCGACAAGCTTGGTTTGGATGATCCTATTGCACGAGGAATGGCTACAGCCTCCAGTGCTCATGGATTGGGAACGGCTGCACTATCAGCAAAAGAACCAGAAGCGTTGCCTTTCTGTGCAATTGCCTATGCATTAACTGGTATTTTTGGGTCATTATTGTGTTCCGTTCCAGCTGTGCGCCAGAGTCTACTACTGATAGTAGGTTGA___GAGAACCGGCAAATCAGATATTCAAATTGTAATGGAACATGTTCACATTGTAAATACAGGTATCTCCAATCATGTAGAAGACTTGTAAATTGTTTGTCCCGTGGATGCTCTAATTGTTATGAATCCCATAACCATAGCAGCTAAAAATGACCATCTCATGGGAGAAGTAAGTTGTTTCAATATTTTTCTTTAGGGTCTGGGTCAATGTTTGCCTACCTTGTATTAAAGAAATTGTAACATAGCAATTCACATTTGAAAATGCTTGCCATACATGACTCCAGACTTCTGAGCTTTTTAAGAGCAACATATGCATTGCTATTTTCATCCAAAAGTTCAAACCTTTCAAGTTTATATATAAAATTCTCCAACCATATGTTTGTAT

Fln Alignment:

sp_v1.1_unigene15___KFMFTGFGRQRPRRSHEIIMVKAVEKDARGLPDGSLNVGRVLHLVVSLGIILAIDKALKRVFTAAMIKFPSSLFGMFCIFSVLSILDVIRPAAATALLNFFEPATTFIQRWLPLFYVPSLVVLPLAVKGIPASSGMKIGAILVGGWAASLYVAGYTAIAVRKMVRTKMIAAEPMPKPSPFSRREIWFWTIILSVSFILTVLSPLAFGTYARTCLPFLLAATALGFILGSGFPPTAKKLLHPIITCALSADLAAFACGTSTGLGFESTLGAYLTKSATNPGAGDILMGFLGSVILSFAFSMFRQRKLVKRHAAEIFSAVVASTIFSLYSTAAMGRVIGLEPTLTVSILPRCITVALALSIVSLFDAANPSXXXXXXXXXXXXXANFAQILLDKLGLDDPIARGMATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLLCSVPAVRQSLLLIVG
F6HMP8____________KFLQMGPHKSRPLRRFQ---VKSMGTDSGSTPLGLQSVFGVLHLVVSLGIILAMDKLLKKAFVAAAIKFPSALFGMFCIFTILVILDSTVPAAAKSLINFFQPALLFIQRWLPLFYVPSLVVLPLAVKDIPAASGLKICFIIVGGWLASLSVAGYTAIAVRKIVKTEMIPAEPMEKPSPFTSIEVWTWTGIFLISFVSALLYPTLLGTNARTCLPFLLASTVLGYVVGSGFPSTVKKVFHPIICCALSADLAALAFGYFSQSGLYPVLGYYLTKASSNPGAGDILMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSIIISTIFSLYSTAFIGRILGLEQDLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVLTGLVGANFVQAVLDKLKFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLLCSVPAVRQSLLAIVG

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
675	25		75		0.996473
1223	80			20	0.995493
1226	80		20		0.995493
1228			80	20	0.995493
1229		80	20		0.995493
1230	20			80	0.995493
1231		20		80	0.995493
1232	20			80	0.995493
1234		20	80		0.995493
1237	20			80	0.995493
1238			20	80	0.995493
1240			80	20	0.995493
1242	20			80	0.995493
1246	20	80			0.995493
1247		20		80	0.995493
1348		50		50	1.0
1677			12	87	0.992554
1710		14		85	0.993533
1727		14		85	0.993533
1962	83		16		0.994512
1974	33	66			1.0
1975	60	20			0.99255
1976		80		20	0.995493
1978	50	50			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1949	1962	CATT CATT CATT CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain