SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7

Length: 4127 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7
GAAGAATGAAAGATAATGTACAAATTCCATATCTGTACTCTTCACATGACATATATATATACATGTAGATGCAAAAGGCTTATAGCGATCATTTTGCCATTTTAATAATGAGATTACAGTCCATTACAGTCGATTACAGTTAAGGCCTGGGCCAGCTAACAAATGATCGCGGAGACCCACTCTTTTTCCCTTTGTCTTTACCTTTAGTTTTTCCTTATTCCCGAAGCGGCTCCTGCTTTTGTTCATTCGTCTCTACTGGTTCCTGGGATTGCATGCTTTCGAGATTCCTGAAGCTCAAGCGTTTAATCCGCTCCGCGTAGCTCAAAGTTCAATGAGGATCAGCTCTCCGCGGGACCTTTACAGCCTAAGGTGATCACCTCAGCATCTTCCAAACAAAAGTGGAGTAATAATTCTGTCAAGAAAGCAGGGTCTAATATGGCTGTATCTATGAGAGACGTGGACCCAGCTTTTCAGGGAGCAGGCCAGAAGTCCGGGCTTGAGATATGGCGAATTGAGAATTTTAAACCCATGCCAATTCCCAAAACTTCTTATGGAAAGTTTCGTAGTGGTGATTCCTATATCATTCTTAAGACAACAGCTTTAAAAAGTGGTGTTTTTCGCTATGATATCCATTATTGGCTTGGCAAAGATACAAGTCAGGATGAAGCTGGTGCAGCAGCCATCAAGACTGTTGAATTGGATGCAGCTCTTGGAGGACGTGCAGTGCAGCATAGAGAGAGTCAAGGACATGAAACAGATAAGTTCCTATCATATTTTAAGCCTTGCATCATACCAGAAGAAGGTGGTGTTGCTTCAGGATTCAAACATGTCCAGGAGAAAACGCATCCAGTTCGTTTGTTTGCATGCAAGGGAAAGCATGTTGTGCATGTGACAGAGGTGCCTTATTCTCGGTCATCCTTAAATCATGATGACATTTTTATTCTTGATACAAAATCCAAAATCTTTCAGTTTAATGGCTCCAACTCATCCATTCAAGAGAGGGCTAAAGCTTTAGAGGTTGTTCAATATATCAAAGATAATTATCATGATGGAAAGTGTGAAGTGGCTGCAATCGAGGATGGGAAATTTGTAGCTGATCCCGAAACAGGAGAGTTTTGGAGCTTTTTTGGTGGTTTTGCTCCTCTTGCCAAGAAGCCCAGCAGTGACGATGAATCACAACCTGAAGCTCTTCCAGCAAAGCTATTCTGCATACAACAGGGCCGTGCAAAACCCATTGAAGGCAATTCATTGACAAGAGAAATGCTGGACACAAACAAATGCTTCCTGTTAGACTGTGGAATTGAGATATTTGTTTGGATGGGTAGGAACACATTGCTTGAGGATAGAAAAGCAGCAAGCTCAGCTGCAGAAGAGCTGATTGCCGGTAAAGGAAAATCAAAGCAAGCTCATGTAACTCGTGTTATGGAAGGATTTGAAACTGTCATGTTCAAATCAAATTTTGATGCATGGCCTCAAAGTACAGATACAGCTATATCTGAAGATGGAAGAAGGTCAAAGTAGCAGCCTTGCTGAAACGACAAGGATTTAATGTCAAGGGCCTTCTCAAAGCAGCTCCAGCAAAAGAGGAAAATCAACCATTTATTGATTGTACTGGCAATCTTCAGGTTTGGCGAGTAAATGGTAAAAACAAATCTCCTATGCCATCGAGTGAACAGTGCAAATTTTACAGTGGTGATTGCTATATTGTGCAATACACTTATCCTGGAGAGGAAAAGGAAGAATACCTGCTTTGCACTTGGATTGGAAAAGGAAGTGTTTCGGAAGAAAGAACCACTGCCGTATCACTAATGAGTAAAATGGCCGAGTCATTGAAAGCACAACCAGTTCAGGCTAAGATCTTTGAGGGCAAAGAGCCTATCCAATTTTTTGCTATTTTGCAAAGCTTCATTGTCTTTAAGGGTGGACTTGGCTCTGGATATAAGAGGTACATTGCAGAAAAAGGCATTACTGATGACACCTACAAAGAAGATGGACTAGCACTTTTTAGAGTGCAAGGAACTGGGCCTGAGAATATGCAAGCAATTCAAGTTGAACCGGTGGCAACGTCTTTGAATTCATCCTATTGTTATATATTGCAAGTGGGGGCAACTGTCTTTACATGGTCTGGCAGCCTTAGTACAGTGGACGACCAAGAACTCGTTGAAAGAATGTTAGATTTGATAAAGCCCGACATGCAGTCCAAACCACAGAAAGAAGGAACTGAATCAGAGTTATTTTGGAATGCACTCGGTGGTAAAAAGGATTATTCAAGTCAAAAGTTGGTTAAGGATATTAGTAAAGATCCTCAATTGTTTGCATGCAGTTTCTCTAAAGGGACATTAATGGGGTTTACAGGTGGCTTGGAGGTTAGAGAGATATTCAATTTTACCCAAGATGATTTAATGACTGAAGACGTGATGATCTTGGATTGCCATTCGGAAATCTATGTTTGGGTTGGCCAACAGGTTGACTCCAAATCTAAACAGCAGGCAACAAATATTGGCCAGAAATTCCTAGAAAAGGATGTGCTACTTGAAAAGTTATCCTTGGAAACTCCTATATTTGTCATATCAGAGGGGAGTGAGCCACCCTTTTTCACTCGTTTCTTCTCTTGGGACTCATCAAAGTCAACGATGCATGGAAATTCATTCCAAAGGAAGCTCTCTATAATGAAAACTGGAGTATCACCAATTGTGGAAAAACCTAAGAGACGTTCTCCAGCTTCCTATGGAGGACGTACGAGTGTGCCAGATAAGTCACAGAGATCTTCTAGGAGCATGTCTTTTAGTCCAGATCGAGTTCGTGTAAGAGGGAGATCTCCAGCTTTTAATGCTTTGGCCTCTGCCTTTGAGAGTCCAAATGGAAGGAATCTTTCTACACCACCTCCAGTTGTCAGAAAACTTTATCCAAAGTCTGTGACGCCGGAGGCACTCAGCAAGACAGTTCCTCCAAGATCACAAGCAATAGCTGCTCTGACATCTGTTTTTGAGCCCATGAGGCAACGGAAACTATTGAATGATTTCGCAGAAGTAAGCTCTGAAACCAAAGTTACTCAACCCAAAAAGTCAGAGGCAAATTCTGTTTCTACAAACAGTAGGGCAAGTCCTATTGTGAATACCAGAACAAATTCTGTTTTGATGAGTACCAGAATTGAATCATTAACTATAAAAGAGGACATCAAGGAAGAGGAAGCTGAAGATGATGAAGGGCAGACTATTTTTCCCTATGAACGTCTGAAGATATCATCCCCTGATCCCGTTCCTGATATTGATGTAACAAAAAGAGAGACATATTTATCTAAGGAGGATTTCCGTGAGAAGTTTGGAATGACTAAAGAAGCTTTCTACAAGATGCCCAAGTGGAAGCAAAACAAGCATAAGATGACCCTTGATTTATTCTAACATTCATCTCACTGCTTGGAAGGTGAAAGCAGCAATTGTAAAAGCAAATATGTATCAATGCCTGTAAGATTCTGTATAAATGCATTTTCCTATGGAATCATCCAGCTAATTATGTTGCTTATAAAAGCAAGAAGAGAGATATTCCTACCAAGACAAATTTTTCTTCAACGGATGAGAATTTTGAGTTTGTGTAGGGTATGATGATGAGCGTGTAGCCTGTCCCACACCAAAGAGCATGGTGCATTCATGGGAGTTTGTGCATTTTTTCCTCCTGCATAATTTTGTCAGCAGTTTGGTATTCTTTGTGGTTCCTAGAGTTGCAGAAAGTCTGTTGTGAGTTCATATTTATGAGAGGCATTATAATCCAGTTAGCAATAGAAGAGAAATCATGGTTATGAAGATTGTTGTTTCTACATTTGCAGAGGCAAGTTTATTTGTTGTATAGTCAATGTAACAAGTCGAAGTCGTCTGTTGGAGCATTCTTAATGATGTCTTGTAGAAGACACATGTCGTGTGTTAACCAGATATTCCAATTGCTTATTGTTTGAGAAATAAAGTATGATTCTTTGTGTTTGAGAGAATTCCCAAGATCAAGACGCCTGATCTAAAATTGTTTGTTGGGAAGTGTTGTGCTTTTATGGAGTTTACAAGGGAATTTCCACATATTTTTGTTGGATATTCAACTTCAACTTCTCAGCCCACATTCAATCCATTTATTTCCAAGCT

Ace file of the UniGene sp_v1.1_unigene7

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	VLN4; VLN4 (ARABIDOPSIS THALIANA VILLIN 4); actin binding	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	InterPros	Term	Type	Identity
Blast2go	Villin headpiece	IPR003128	-	-
Blast2go	Gelsolin	IPR007122	-	-
Blast2go	Gelsolin domain	IPR007123	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL35

Fln msg: Separated hits, possible frame ERROR between 1509 and 1515, your sequence is longer than subject: 989 - 610

Fln protein: MAVSMRDVDPAFQGAGQKSGLEIWRIENFKPMPIPKTSYGKFRSGDSYIILKTTALKSGVFRYDIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQHRESQGHETDKFLSYFKPCIIPEEGGVASGFKHVQEKTHPVRLFACKGKHVVHVTEVPYSRSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYIKDNYHDGKCEVAAIEDGKFVADPETGEFWSFFGGFAPLAKKPSSDDESQPEALPAKLFCIQQGRAKPIEGNSLTREMLDTNKCFLLDCGIEIFVWMGRNTLLEDRKAASSAAEELIAGKGKSKQAHVTRVMEGFETVMFKSNFDAWPQSTDTAISEDGxxxKVAALLKRQGFNVKGLLKAAPAKEENQPFIDCTGNLQVWRVNGKNKSPMPSSEQCKFYSGDCYIVQYTYPGEEKEEYLLCTWIGKGSVSEERTTAVSLMSKMAESLKAQPVQAKIFEGKEPIQFFAILQSFIVFKGGLGSGYKRYIAEKGITDDTYKEDGLALFRVQGTGPENMQAIQVEPVATSLNSSYCYILQVGATVFTWSGSLSTVDDQELVERMLDLIKPDMQSKPQKEGTESELFWNALGGKKDYSSQKLVKDISKDPQLFACSFSKGTLMGFTGGLEVREIFNFTQDDLMTEDVMILDCHSEIYVWVGQQVDSKSKQQATNIGQKFLEKDVLLEKLSLETPIFVISEGSEPPFFTRFFSWDSSKSTMHGNSFQRKLSIMKTGVSPIVEKPKRRSPASYGGRTSVPDKSQRSSRSMSFSPDRVRVRGRSPAFNALASAFESPNGRNLSTPPPVVRKLYPKSVTPEALSKTVPPRSQAIAALTSVFEPMRQRKLLNDFAEVSSETKVTQPKKSEANSVSTNSRASPIVNTRTNSVLMSTRIESLTIKEDIKEEEAEDDEGQTIFPYERLKISSPDPVPDIDVTKRETYLSKEDFREKFGMTKEAFYKMPKWKQNKHKMTLDLF*

Protein Length: 990

Fln nts: GAAGAATGAAAGATAATGTACAAATTCCATATCTGTACTCTTCACATGACATATATATATACATGTAGATGCAAAAGGCTTATAGCGATCATTTTGCCATTTTAATAATGAGATTACAGTCCATTACAGTCGATTACAGTTAAGGCCTGGGCCAGCTAACAAATGATCGCGGAGACCCACTCTTTTTCCCTTTGTCTTTACCTTTAGTTTTTCCTTATTCCCGAAGCGGCTCCTGCTTTTGTTCATTCGTCTCTACTGGTTCCTGGGATTGCATGCTTTCGAGATTCCTGAAGCTCAAGCGTTTAATCCGCTCCGCGTAGCTCAAAGTTCAATGAGGATCAGCTCTCCGCGGGACCTTTACAGCCTAAGGTGATCACCTCAGCATCTTCCAAACAAAAGTGGAGTAATAATTCTGTCAAGAAAGCAGGGTCTAAT_-_ATGGCTGTATCTATGAGAGACGTGGACCCAGCTTTTCAGGGAGCAGGCCAGAAGTCCGGGCTTGAGATATGGCGAATTGAGAATTTTAAACCCATGCCAATTCCCAAAACTTCTTATGGAAAGTTTCGTAGTGGTGATTCCTATATCATTCTTAAGACAACAGCTTTAAAAAGTGGTGTTTTTCGCTATGATATCCATTATTGGCTTGGCAAAGATACAAGTCAGGATGAAGCTGGTGCAGCAGCCATCAAGACTGTTGAATTGGATGCAGCTCTTGGAGGACGTGCAGTGCAGCATAGAGAGAGTCAAGGACATGAAACAGATAAGTTCCTATCATATTTTAAGCCTTGCATCATACCAGAAGAAGGTGGTGTTGCTTCAGGATTCAAACATGTCCAGGAGAAAACGCATCCAGTTCGTTTGTTTGCATGCAAGGGAAAGCATGTTGTGCATGTGACAGAGGTGCCTTATTCTCGGTCATCCTTAAATCATGATGACATTTTTATTCTTGATACAAAATCCAAAATCTTTCAGTTTAATGGCTCCAACTCATCCATTCAAGAGAGGGCTAAAGCTTTAGAGGTTGTTCAATATATCAAAGATAATTATCATGATGGAAAGTGTGAAGTGGCTGCAATCGAGGATGGGAAATTTGTAGCTGATCCCGAAACAGGAGAGTTTTGGAGCTTTTTTGGTGGTTTTGCTCCTCTTGCCAAGAAGCCCAGCAGTGACGATGAATCACAACCTGAAGCTCTTCCAGCAAAGCTATTCTGCATACAACAGGGCCGTGCAAAACCCATTGAAGGCAATTCATTGACAAGAGAAATGCTGGACACAAACAAATGCTTCCTGTTAGACTGTGGAATTGAGATATTTGTTTGGATGGGTAGGAACACATTGCTTGAGGATAGAAAAGCAGCAAGCTCAGCTGCAGAAGAGCTGATTGCCGGTAAAGGAAAATCAAAGCAAGCTCATGTAACTCGTGTTATGGAAGGATTTGAAACTGTCATGTTCAAATCAAATTTTGATGCATGGCCTCAAAGTACAGATACAGCTATATCTGAAGATGGAAGxxxxxxCAAAGTAGCAGCCTTGCTGAAACGACAAGGATTTAATGTCAAGGGCCTTCTCAAAGCAGCTCCAGCAAAAGAGGAAAATCAACCATTTATTGATTGTACTGGCAATCTTCAGGTTTGGCGAGTAAATGGTAAAAACAAATCTCCTATGCCATCGAGTGAACAGTGCAAATTTTACAGTGGTGATTGCTATATTGTGCAATACACTTATCCTGGAGAGGAAAAGGAAGAATACCTGCTTTGCACTTGGATTGGAAAAGGAAGTGTTTCGGAAGAAAGAACCACTGCCGTATCACTAATGAGTAAAATGGCCGAGTCATTGAAAGCACAACCAGTTCAGGCTAAGATCTTTGAGGGCAAAGAGCCTATCCAATTTTTTGCTATTTTGCAAAGCTTCATTGTCTTTAAGGGTGGACTTGGCTCTGGATATAAGAGGTACATTGCAGAAAAAGGCATTACTGATGACACCTACAAAGAAGATGGACTAGCACTTTTTAGAGTGCAAGGAACTGGGCCTGAGAATATGCAAGCAATTCAAGTTGAACCGGTGGCAACGTCTTTGAATTCATCCTATTGTTATATATTGCAAGTGGGGGCAACTGTCTTTACATGGTCTGGCAGCCTTAGTACAGTGGACGACCAAGAACTCGTTGAAAGAATGTTAGATTTGATAAAGCCCGACATGCAGTCCAAACCACAGAAAGAAGGAACTGAATCAGAGTTATTTTGGAATGCACTCGGTGGTAAAAAGGATTATTCAAGTCAAAAGTTGGTTAAGGATATTAGTAAAGATCCTCAATTGTTTGCATGCAGTTTCTCTAAAGGGACATTAATGGGGTTTACAGGTGGCTTGGAGGTTAGAGAGATATTCAATTTTACCCAAGATGATTTAATGACTGAAGACGTGATGATCTTGGATTGCCATTCGGAAATCTATGTTTGGGTTGGCCAACAGGTTGACTCCAAATCTAAACAGCAGGCAACAAATATTGGCCAGAAATTCCTAGAAAAGGATGTGCTACTTGAAAAGTTATCCTTGGAAACTCCTATATTTGTCATATCAGAGGGGAGTGAGCCACCCTTTTTCACTCGTTTCTTCTCTTGGGACTCATCAAAGTCAACGATGCATGGAAATTCATTCCAAAGGAAGCTCTCTATAATGAAAACTGGAGTATCACCAATTGTGGAAAAACCTAAGAGACGTTCTCCAGCTTCCTATGGAGGACGTACGAGTGTGCCAGATAAGTCACAGAGATCTTCTAGGAGCATGTCTTTTAGTCCAGATCGAGTTCGTGTAAGAGGGAGATCTCCAGCTTTTAATGCTTTGGCCTCTGCCTTTGAGAGTCCAAATGGAAGGAATCTTTCTACACCACCTCCAGTTGTCAGAAAACTTTATCCAAAGTCTGTGACGCCGGAGGCACTCAGCAAGACAGTTCCTCCAAGATCACAAGCAATAGCTGCTCTGACATCTGTTTTTGAGCCCATGAGGCAACGGAAACTATTGAATGATTTCGCAGAAGTAAGCTCTGAAACCAAAGTTACTCAACCCAAAAAGTCAGAGGCAAATTCTGTTTCTACAAACAGTAGGGCAAGTCCTATTGTGAATACCAGAACAAATTCTGTTTTGATGAGTACCAGAATTGAATCATTAACTATAAAAGAGGACATCAAGGAAGAGGAAGCTGAAGATGATGAAGGGCAGACTATTTTTCCCTATGAACGTCTGAAGATATCATCCCCTGATCCCGTTCCTGATATTGATGTAACAAAAAGAGAGACATATTTATCTAAGGAGGATTTCCGTGAGAAGTTTGGAATGACTAAAGAAGCTTTCTACAAGATGCCCAAGTGGAAGCAAAACAAGCATAAGATGACCCTTGATTTATTCTAA___CATTCATCTCACTGCTTGGAAGGTGAAAGCAGCAATTGTAAAAGCAAATATGTATCAATGCCTGTAAGATTCTGTATAAATGCATTTTCCTATGGAATCATCCAGCTAATTATGTTGCTTATAAAAGCAAGAAGAGAGATATTCCTACCAAGACAAATTTTTCTTCAACGGATGAGAATTTTGAGTTTGTGTAGGGTATGATGATGAGCGTGTAGCCTGTCCCACACCAAAGAGCATGGTGCATTCATGGGAGTTTGTGCATTTTTTCCTCCTGCATAATTTTGTCAGCAGTTTGGTATTCTTTGTGGTTCCTAGAGTTGCAGAAAGTCTGTTGTGAGTTCATATTTATGAGAGGCATTATAATCCAGTTAGCAATAGAAGAGAAATCATGGTTATGAAGATTGTTGTTTCTACATTTGCAGAGGCAAGTTTATTTGTTGTATAGTCAATGTAACAAGTCGAAGTCGTCTGTTGGAGCATTCTTAATGATGTCTTGTAGAAGACACATGTCGTGTGTTAACCAGATATTCCAATTGCTTATTGTTTGAGAAATAAAGTATGATTCTTTGTGTTTGAGAGAATTCCCAAGATCAAGACGCCTGATCTAAAATTGTTTGTTGGGAAGTGTTGTGCTTTTATGGAGTTTACAAGGGAATTTCCACATATTTTTGTTGGATATTCAACTTCAACTTCTCAGCCCACATTCAATCCATTTATTTCCAAGCT

Fln Alignment:

sp_v1.1_unigene7___MAVSMRDVDPAFQGAGQKSGLEIWRIENFKPMPIPKTSYGKFRSGDSYIILKTTALKSGVFRYDIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQHRESQGHETDKFLSYFKPCIIPEEGGVASGFKHVQEKTHPVRLFACKGKHVVHVTEVPYSRSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYIKDNYHDGKCEVAAIEDGKFVADPETGEFWSFFGGFAPLAKKPSSDDESQPEALPAKLFCIQQGRAKPIEGNSLTREMLDTNKCFLLDCGIEIFVWMGRNTLLEDRKAASSAAEELIAGKGKSKQAHVTRVMEGFETVMFKSNFDAWPQSTDTAISEDGRxxKVAALLKRQGFNVKGLLKAAPAKEENQPFIDCTGNLQVWRVNGKNKSPMPSSEQCKFYSGDCYIVQYTY-PGEEKEEYLLCTWIGKGSVSEERTTAVSLMSKMAESLKAQPVQAKIFEGKEPIQFFAILQSFIVFKGGLGSGYKRYIAEKGITDDTYKEDGLALFRVQGTGPENMQAIQVEPVATSLNSSYCYILQVGATVFTWSGSLSTVDDQELVERMLDLIKPDMQSKPQKEGTESELFWNALGGKK
B8LL35___________MAVSMKNVDPAFQGVGQKVGTDIWRIENFRPVPIPKSDYGKFYCGDSYIVLQTTATKSGAYHYDIHFWLGKDTSQDEAGTAAIKTVELDAALGGRAVQYRELQGHETDKFLSYFKPCIIPLEGGAASGFRKPEITKFEPRLYVCKGRRVVRVKQVPFARTSLNHDDVFVLDTESKVYQFNGASSNIQERAKSLEVVQYIKDEYHEGKCDIAVIDDGKLVAESDSGEFWALFGGFAPIGKKNGSDDDSRMESTPGKLYSIVEGEIKIVEG-PLSKGMLESNKCYLLDCGAEVYVWVGRVTQLEERKSASLTAEEFISNQKRPRNTHITRVIQGFETLPFRSNFDSWSLGTGTSGSEDGRxxKVAALLKQQGINVKGILKATPLKEEIPPLLEGNGKLEVWRVKNVSKAPVPKEDIGKFYSGDCYIILYTYHSGDRKEDYFLCFWLGKQSTQEDQAVAARLTNTMANSLKGRPVQGRILEGKEPPQFIGLFPNMAILKGGLSAGYKKYITEKGINDETYNGDGIALIQVCGTGPHNSKAIQVDPVAESLNSCDCFLLQTGTSLFAWHGNSSALEQQLSVARIAEFLKPGTLLKAVKEGTGQQHFGMHWEGNK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
703		14		85	0.993533
783		80		20	0.995493
935	14			14	0.984337
936	85			14	0.993533
1050		11		88	0.923564
1137			20	80	0.995493
1386		88		11	0.923564
1410		11		88	0.923564
1494			12	87	0.992554
1731	75		25		0.996473
1846	81		18		0.999994
1966		72		27	1.0
2151	85		14		0.993533
2251		83		16	0.994512
2360		20	80		0.999996
2510	75		25		0.996473
2511	75			25	0.996473
3105	12		87		0.992554
3207	90		10		0.90298
3251		90		10	0.90298
3353	84		15		0.999986
3612	38	61			1.0
3978			85	5	0.999793

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain