SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210498

Length: 329 nt

UniGene Fasta

>sp_v3.0_unigene210498
TTGATCGAGCTCCTCCCTGCTCGTGCTCGTCGACGATTCTCCAACCGTGGATTGAAGCGAAAGCACATGGCGCTTCTTAAACGTCTTCGTAAGGCAAAGCGTGAGGTCGCAGTTGGCGAGCGCCCCTCTGCTGTGAAGACTCACCTCCGTGACATGATCATTGTTCCTGAGATGATTGGTAGCATTATTGGAGTTTACAACGGAAAGGACTTCAATGGTATCGAAATCAAGCCTGAGATGATTGGTCACTACTTGGGCGAGTTCTCTATCAGCTACAAACCAGTCAAGCACGGTCGCCCCGGTATTGGTGCCACCCACTCTTCTCGTTT

Ace file of the UniGene sp_v3.0_unigene210498

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein S15 [Argopecten irradians]	-	-	7.9874e-44	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	40S ribosomal protein S15	-	-	8.11e-17	-

Source	Gene names
Sma3	At1g04270; At5g09490; At5g09500; At5g09510; At5g43640; At5g63070; CHLREDRAFT_24289; GSVIVT00001537001; GSVIVT00020133001; GSVIVT00023867001; K9D7.14; LOC_Os03g58430; LOC_Os07g08660; MDC12.3; MICPUCDRAFT_30685; MICPUN_89585; OJ1046_F10.119; OSJNBa0052F07.2

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L2	IPR002171	-	-
Sma3	Ribosomal protein S19/S15	IPR002222	-	-
Sma3	Ribosomal protein S19A/S15e	IPR005713	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Ribosomal protein L2, domain 3	IPR014726	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G09510.1	Ribosomal protein S19 family protein chr5:2955698-2956554 REVERSE LENGTH=152	77%
RefSeq	Arabidopsis thaliana	NP_001078554.1	40S ribosomal protein S15-4 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002307632.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK76

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 109 - 151

Fln protein: LIELLPARARRRFSNRGLKRKHMALLKRLRKAKREVAVGERPSAVKTHLRDMIIVPEMIGSIIGVYNGKDFNGIEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSR

Protein Length: 110

Fln nts: TTGATCGAGCTCCTCCCTGCTCGTGCTCGTCGACGATTCTCCAACCGTGGATTGAAGCGAAAGCACATGGCGCTTCTTAAACGTCTTCGTAAGGCAAAGCGTGAGGTCGCAGTTGGCGAGCGCCCCTCTGCTGTGAAGACTCACCTCCGTGACATGATCATTGTTCCTGAGATGATTGGTAGCATTATTGGAGTTTACAACGGAAAGGACTTCAATGGTATCGAAATCAAGCCTGAGATGATTGGTCACTACTTGGGCGAGTTCTCTATCAGCTACAAACCAGTCAAGCACGGTCGCCCCGGTATTGGTGCCACCCACTCTTCTCGTTT

Fln Alignment:

R_6m_Euler_1459___LIELLPARARRRFSNRGLKRKHMALLKRLRKAKREVAVGERPSAVKTHLRDMIIVPEMIGSIIGVYNGKDFNGIEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSR
A9NK76________________LVKLFHARARRRFQ-RGLKRQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain