SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210466

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene210466
TCGTGACCTTGGCTGTCACTCAATAATGCTTGGTGCAGATGCTGCAAGCATATCTGCAGCTGTTGAAGCTTTGCGTGCATATCCAGGAGGTCTACAAGTTGGAGGTGGGGTTAATCCAGACAATGCTTGCAAATACCTGGATTCTGGAGCAAGTCATGTGATAGTTACCTCTGACGGAAAGTATATTATTGTGACAGATAGATGGCAGAAGTTCAGTGACATAGCACTAAATGAGAAG

Ace file of the UniGene sp_v3.0_unigene210466

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic n=3 Tax=Arabidopsis RepID=HIS4_ARATH	-	-	2.0e-13	40%
FL-Next	sp=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Sma3	Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerase	-	-	2.212e-09	-

Source	Gene names
Sma3	AT2G36230; At2g36230; CHLREDRAFT_82364; F2H17.16; GSVIVT00021607001; HIS6; OsI_19895; OsJ_18479; POPTRDRAFT_198403; POPTRDRAFT_849847; ProFARI; RCOM_0517160;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	GO:0003949	Molecular Function	-
Sma3	histidine biosynthetic process	GO:0000105	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histidine biosynthesis	IPR006062	-	-
Sma3	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic	IPR011858	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36230.1	APG10, HISN3 Aldolase-type TIM barrel family protein chr2:15193878-15195509 REVERSE LENGTH=304	7.0e-19	48%
RefSeq	Arabidopsis thaliana	NP_181165.1	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Arabidopsis thaliana]	9.0e-19	48%
RefSeq	Populus trichocarpa	XP_002305862.1	predicted protein, partial [Populus trichocarpa]	9.0e-19	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O82782

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 79 - 304

Fln protein: RDLGCHSIMLGADAASISAAVEALRAYPGGLQVGGGVNPDNACKYLDSGASHVIVTSDGKYIIVTDRWQKFSDIALNEK

Protein Length: 80

Fln nts: TCGTGACCTTGGCTGTCACTCAATAATGCTTGGTGCAGATGCTGCAAGCATATCTGCAGCTGTTGAAGCTTTGCGTGCATATCCAGGAGGTCTACAAGTTGGAGGTGGGGTTAATCCAGACAATGCTTGCAAATACCTGGATTCTGGAGCAAGTCATGTGATAGTTACCTCTGACGGAAAGTATATTATTGTGACAGATAGATGGCAGAAGTTCAGTGACATAGCACTAAATGAGAAG

Fln Alignment:

uagpf_euler_5929___GCHSIMLGXXXXXXXXXXXXXXXYPGGLQVGGGVNPDNACKYLDSGASHVIVTS----------------------------------DGKYIIVTDRWQKFSDIALNEK
O82782________________GGHVIMLGADPLSQAAAIGALHAYPGGLQVGGGINSENCMSYIEEGASHVIVTSYVFNNGKIDLERLKDIVSIVGKQRLILDLSCRKKDGRYAIVTDRWQKFSDVILDEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain