SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210453

Length: 387 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene210453
TGGCTTCGCCGCTTCTCCTGAAGAGTGAAATTGTTAGGGTATTAGAACATACCTGCTATACCCTTGTTTTCATAGTTTAGAAGCAAGAAAGAAATCATGAAGATTTCAACAGTTGGGTTTTTCACAATCAACTCCCCACTCTCATCTCCCAGAGGTCAGGCCCCTATGGGATTCATGTCCCAAACAAGTCCCACAAGCAGCCCAATTTCAAGTCCTGGCAAGAGGGTATTAAGGTCTTCTGCTAGCATTAATGGCAGAACCATCAGTGCCAGTTGTGCAACAGAAGAGAAGAGGGTTATTGCTTTCAGGAGAAAACAGGATCACTATGCTCTTTTGGGGGTCTCCTGTGACGCCTCCTTCAGTGATATCAGGGTTGCATACAGAAAA

Ace file of the UniGene sp_v3.0_unigene210453 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ domain containing protein	-	-	0.0001	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Sma3	heat shock protein binding	GO:0031072	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZB6

Fln msg: Distance to subject end: 78 aas, your sequence is shorter than subject: 97 - 179

Fln protein: MKISTVGFFTINSPLSSPRGQAPMGFMSQTSPTSSPISSPGKRVLRSSASINGRTISASCATEEKRVIAFRRKQDHYALLGVSCDASFSDIRVAYRK

Protein Length: 98

Fln nts: TGGCTTCGCCGCTTCTCCTGAAGAGTGAAATTGTTAGGGTATTAGAACATACCTGCTATACCCTTGTTTTCATAGTTTAGAAGCAAGAAAGAAATC_-_ATGAAGATTTCAACAGTTGGGTTTTTCACAATCAACTCCCCACTCTCATCTCCCAGAGGTCAGGCCCCTATGGGATTCATGTCCCAAACAAGTCCCACAAGCAGCCCAATTTCAAGTCCTGGCAAGAGGGTATTAAGGTCTTCTGCTAGCATTAATGGCAGAACCATCAGTGCCAGTTGTGCAACAGAAGAGAAGAGGGTTATTGCTTTCAGGAGAAAACAGGATCACTATGCTCTTTTGGGGGTCTCCTGTGACGCCTCCTTCAGTGATATCAGGGTTGCATACAGAAAA

Fln Alignment:

Ac_Euler_2578___MKISTVGFFTINSPLSSPRGQAPMGFMXXXXXXXXXXXXP----GKRVLRSSASINGRTISASCATEEKRVIAFRRKQDHYALLGVSCDASFSDIRVAYRK
A9NZB6________________MKISTVGFFTMNSPLSSPRGQAPVGFMSQTSPTSSPISSNQLSSGKRVLRASSSFNGRTISASCATEEKRHIAFRRKKDHYALLGVPCDASYSDMRVAYRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain