SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210380

Length: 333 nt

UniGene Fasta

>sp_v3.0_unigene210380
TTCGAGCCGTGAAGCTGAGACGGGATCGGATTGTGGTGGTGTTGGAGCACAAGATTTATGTGTACAATTCGTGGATTTGAAGCTATTGCATCAGATTGAGACGATGGCAAACCCTAAGGGCTTGTGTGCTGTTTCTCATGCTCCCAATAGCTTCGTGTTGGCCTTCTCAGGCTTGCACCGTGAGCAGATGAGAGTCAAGTGCTATGGCCTCAAGAGGACCAGATTCGTAACTGCCCATGACTCTAGCATCACCTGCTTTCTGCTCATCCTTTATGGCAGCCTCCTTGCCCTGTACTCAAGACTAGAGAAGAATATCCGAGTCAACTATTTACC

Ace file of the UniGene sp_v3.0_unigene210380

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	WD-repeat protein, putative	-	-	6.544e-06	-

Source	Gene names
Sma3	At2g40810; At3g62770; F26K9_200; GSVIVT00023542001; GSVIVT00023544001; OJ1276_B06.19; Os01g0168500; OsI_00560; OsJ_00527; P0028E10.20; PHYPADRAFT_118902; PHYPADRAFT_122793; PHYPADRAFT_57042; POPTRDRAFT_1114972; POPTRDRAFT_243527; POPTRDRAFT_900327; RCOM_0

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	autophagy	GO:0006914	Biological Process	-
Sma3	senescence	GO:0010149	Biological Process	-
Sma3	response to starvation	GO:0042594	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3		IPR004348	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40810.1	ATATG18C, ATG18C homolog of yeast autophagy 18C chr2:17032686-17034338 FORWARD LENGTH=393	5.0e-24	57%
RefSeq	Arabidopsis thaliana	NP_973650.1	ATG18c-like protein [Arabidopsis thaliana]	7.0e-24	57%
RefSeq	Populus trichocarpa	XP_002329232.1	predicted protein [Populus trichocarpa]	4.0e-25	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRE8

Fln msg: Overlapping hits, possible frame ERROR between 68 and 68, Distance to subject end: 162 aas, your sequence is shorter than subject: 110 - 403

Fln protein: RAVKLRRDRIVVVLEHKIYVYxxVDLKLLHQIETMANPKGLCAVSHAPNSFVLAFSGLHREQMRVKCYGLKRTRFVTAHDSSITCFLLILYGSLLALYSRLEKNIRVNYL

Protein Length: 111

Fln nts: TTCGAGCCGTGAAGCTGAGACGGGATCGGATTGTGGTGGTGTTGGAGCACAAGATTTATGTGTACxxxxxxGTGGATTTGAAGCTATTGCATCAGATTGAGACGATGGCAAACCCTAAGGGCTTGTGTGCTGTTTCTCATGCTCCCAATAGCTTCGTGTTGGCCTTCTCAGGCTTGCACCGTGAGCAGATGAGAGTCAAGTGCTATGGCCTCAAGAGGACCAGATTCGTAACTGCCCATGACTCTAGCATCACCTGCTTTCTGCTCATCCTTTATGGCAGCCTCCTTGCCCTGTACTCAAGACTAGAGAAGAATATCCGAGTCAACTATTTACC

Fln Alignment:

Ac_Euler_260___RAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCAVSHAPNSFVLAFSGLHREQMRVKCYGLKRTRFVTAHDSSITCF
B8LRE8________________RAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCCVSHAPNSFVLACPGLHRGQMRVEHYGLKRTKFITAHDSRIACF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain