SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210366

Length: 499 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene210366
CTTAATTCTGGAATAAGCGATATTCTTCCTGAGTCTAAGATTTGTGACTTTCAGTTTGATCCATGTGGGTATTCCATGAATGCTCTTGAAGGAGCAGCTATTTCCACTATTCATGTAACGCCTGAGGATGGTTTCAGTTATGCAAGTTTTGAGGCAATGGGCTACAATCCCAAGCATTGTGACCTAAGCTGTTTTAGGCCTATGGTATTCTCCATCTCAGTTCATGCCAGTGTGGGCAACGGGCATTCTTCATGGACCAGGCCAGTTTGGCCACAGGGATATATCTGTGACATGACAAGTGATCAAGGGCTCACAGGAAAGAGCAGTGTTGTATATCATACATACAGAATGGCCACTAACGAGTCTCCCAGGTCTACTCTGCCATTGCTTGCTTGGGAAGAGGAAAGTGAAGAAAATGGCTGTTTGCAATTGACCGAAAAGGAAAAGAAGCTTCTCAAATGTGAAATGCAGGAAGGTTGAGAGATGCACATTGTTCTGG

Ace file of the UniGene sp_v3.0_unigene210366 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI	-	-	87%
FL-Next	sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine).	-	-	93%
Sma3	S-adenosylmethionine decarboxylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:4.1.1.5-	-	0.0	-

Source	Gene names
Sma3	ADOMETDC2; At3g02470; At3g25570; At5g15950; At5g18930; CT093; F1N13_90; GSVIVT00021193001; GSVIVT00038126001; OJ1004_A05.7; OJ1476_F05.33; Os02g0611200; OsI_08032; OsJ_07492; PHYPADRAFT_119537; PHYPADRAFT_119603; PHYPADRAFT_192806; PHYPADRAFT_193850; PHYP

Source	GOs	Term	Type	Identity
Sma3	adenosylmethionine decarboxylase activity	GO:0004014	Molecular Function	-
Sma3	spermine biosynthetic process	GO:0006597	Biological Process	-
Sma3	spermidine biosynthetic process	GO:0008295	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	S-adenosylmethionine decarboxylase	IPR001985	-	-
Sma3	S-adenosyl-l-methionine decarboxylase leader peptide	IPR012511	-	-
Sma3	S-adenosylmethionine decarboxylase, core	IPR016067	-	-
Sma3	S-adenosylmethionine decarboxylase, conserved site	IPR018166	-	-
Sma3	S-adenosylmethionine decarboxylase subgroup	IPR018167	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G02470.1	SAMDC S-adenosylmethionine decarboxylase chr3:510223-511323 FORWARD LENGTH=366	9.0e-34	51%
RefSeq	Arabidopsis thaliana	NP_001154585.1	S-adenosylmethionine decarboxylase 1 beta chain [Arabidopsis thaliana]	1.0e-33	51%
RefSeq	Populus trichocarpa	XP_002329311.1	predicted protein, partial [Populus trichocarpa]	3.0e-36	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: G8C847

Fln msg: your sequence is shorter than subject: 160 - 386

Fln protein: LNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGFSYASFEAMGYNPKHCDLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENGCLQLTEKEKKLLKCEMQEG*

Protein Length: 161

Fln nts: CTTAATTCTGGAATAAGCGATATTCTTCCTGAGTCTAAGATTTGTGACTTTCAGTTTGATCCATGTGGGTATTCCATGAATGCTCTTGAAGGAGCAGCTATTTCCACTATTCATGTAACGCCTGAGGATGGTTTCAGTTATGCAAGTTTTGAGGCAATGGGCTACAATCCCAAGCATTGTGACCTAAGCTGTTTTAGGCCTATGGTATTCTCCATCTCAGTTCATGCCAGTGTGGGCAACGGGCATTCTTCATGGACCAGGCCAGTTTGGCCACAGGGATATATCTGTGACATGACAAGTGATCAAGGGCTCACAGGAAAGAGCAGTGTTGTATATCATACATACAGAATGGCCACTAACGAGTCTCCCAGGTCTACTCTGCCATTGCTTGCTTGGGAAGAGGAAAGTGAAGAAAATGGCTGTTTGCAATTGACCGAAAAGGAAAAGAAGCTTCTCAAATGTGAAATGCAGGAAGGTTGA___GAGATGCACATTGTTCTGG

Fln Alignment:

uma_euler_32806___LNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGFSYASFEAMGYNPKHCDL--------SCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENG
G8C847________________LNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGSSYASFEAMGYNPKDCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain