SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210364

Length: 624 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene210364 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L28, putative n=1 Tax=Ricinus communis RepID=B9RQ66_RICCO	-	-	5.99994e-41	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	60S ribosomal protein L28	-	-	2.005e-12	-

Source	Gene names
Sma3	At2g19730; At4g29410; F17A13.230; F6F22.24; GSVIVT00032162001; GSVIVT00034210001; OJ1119_A01.6; OJ1362_G11.15; Os01g0706500; Os02g0821200; Os05g0541900; OsI_03446; OsI_09485; OsI_20825; OsJ_03190; OsJ_08908; OsJ_19397; P0474F11.21; PHYPADRAFT_228172; PHYP

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L28e	IPR002672	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G19730.1	Ribosomal L28e protein family chr2:8511752-8512995 FORWARD LENGTH=143	7.0e-40	72%
RefSeq	Arabidopsis thaliana	NP_001077920.1	60S ribosomal protein L28-1 [Arabidopsis thaliana]	8.99999e-40	72%
RefSeq	Populus trichocarpa	XP_002304108.1	predicted protein [Populus trichocarpa]	3.00004e-41	76%

Full-Lengther Next Prediction

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain