SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210289

Length: 1660 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene210289

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MIP-T3 multi-domain protein	-	-	1.0e-11	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Sma3	Predicted protein	-	-	0.0	-

Source	Gene names
Sma3	PHYPADRAFT_192584;

Source	GOs	Term	Type	e value	Identity
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67320.1	HOS15 WD-40 repeat family protein chr5:26857268-26860974 FORWARD LENGTH=613	72%
RefSeq	Arabidopsis thaliana	NP_201533.1	WD-40 repeat family protein [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002332225.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: No stop codon before M and M found is too far from subject M, your sequence is longer than subject: 376 - 314

Fln protein: MEITTATSSSTFSEIPSSDVTILEGHTSEVFICAWSPTGSLLASGSGDSTARIWTIPEGPCGSTIQNGTPKALVLKHFKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSKDGELRNTLNKHKGPIFSLKWNKKGDCLLSGSVDKTAIIWDAKTGESKQQFEFHSAPTLDVDWRNNVSFATCSTDKMIYVCKFGENRPIKTFSGHQDEVNAIKWDPTGTLLASCSDDFTAKIWSMKQDRCLHDLKEHTKEIYTIKWSPTGSGTNNPNQQLVLASASFDSTIKLWDVDQGSQLFSLTSHSEPVYSVAFSPNGEYLASGSFDRCLHIWSVKDGSLVKTYRGSGGIFEVCWNREGDKVAACFSNNTVCVLDFRM*

Protein Length: 377

Fln nts: AGAACGTGAACGAGAAAATGAACGTGAACGTGAACGCGAAAGAGAGAGGGAAAAGGAGAGGGAAAAGGAGAGAGAAAGGCAGGAAAGGGAGAAAGAAAGAGATCGAGAAAGGGAACGACTAGAAAAGGAGAGGGACAGAGAGCGAGAAAAAGAGAAGGAAAAGGAGAAGGAACACGAGGAATATGTTGAGAAGGAGAAAGATAGAGATCGAGAAGAGAAAGTCAAGGTTAAAGTTGAGGAGACTAGAGTGCCTGCAGGCCCAGAACCCATGGAGATTACAACTGCCACATCTTCATCTACATTTAGTGAGATTCCAAGTTCAGATGTCACTATCTTGGAAGGACACACTTCTGAGGTTTTTATTTGTGCATGGAGTCCAACAGGTTCACTGCTTGCTTCTGGATCTGGAGACTCAACAGCTCGAATTTGGACAATTCCAGAAGGCCCATGTGGATCTACAATCCAGAATGGGACACCAAAAGCTCTTGTTTTGAAACATTTCAAGGGTAGAACAAATGAAAAAAGCAAGGATGTGACAACCCTTGATTGGAATGGAGAAGGGACACTACTCGCAACTGGTTCTTATGATGGACAAGCAAGGATTTGGAGTAAGGATGGAGAATTGAGGAACACATTAAACAAACATAAAGGACCCATTTTCTCTCTTAAATGGAACAAGAAAGGAGACTGCCTTCTTAGTGGAAGTGTGGATAAAACTGCGATTATATGGGATGCCAAGACGGGCGAATCAAAACAACAATTTGAGTTTCATTCAGCACCCACTCTTGATGTTGATTGGCGGAATAATGTCTCTTTTGCCACGTGCTCCACAGACAAGATGATATATGTTTGTAAATTTGGGGAAAATCGCCCTATCAAAACCTTTTCTGGGCATCAGGATGAAGTCAATGCTATTAAATGGGACCCGACTGGGACACTTCTTGCTTCTTGCTCTGATGACTTCACAGCAAAGATATGGAGTATGAAGCAGGATAGATGTCTACATGATCTCAAGGAACACACTAAGGAAATTTATACAATCAAGTGGAGTCCCACTGGTTCGGGTACAAACAATCCTAATCAGCAATTAGTCTTAGCCAGTGCATCATTTGATTCAACAATCAAACTATGGGATGTTGATCAAGGAAGCCAATTGTTCAGCTTGACTAGTCATAGTGAACCTGTATATTCAGTTGCTTTCAGTCCAAATGGAGAGTACCTGGCCAGTGGATCATTTGACAGGTGTTTGCATATCTGGTCTGTGAAGGATGGAAGCCTTGTCAAGACATATAGAGGAAGTGGTGGAATTTTTGAAGTTTGCTGGAATAGAGAAGGCGATAAAGTTGCAGCTTGTTTTTCAAACAACACAGTCTGTGTATTGGATTTTAGAATGTAA___CTTCAGGAAATAGCAATGATTCTTCCCCGGAAGGATGTTTCCTGCTGGGTTATAAAATAGATTCATTTGGTTCATTCTACATTATTTTGTCTGATCGTTAAAATTTCTCAGTTATATTTGCATATGGCTTCCTGTTGATCTTGGTGCTGTTTGAATTATTCCAACTAACTAATAATTTACAAGTTGAGATCCCATATTATTTATATATTGTGCAAGGTTCACTGTTTTAAACCGTATAAGCAGTAAACCATATGTATATCATAT

Fln Alignment:

uma_euler_28318___VTILEGHTSEVFICAWSPTGSLLASGSGDSTARIWTIPEGPCGSTIQNGTPKALVLKHFKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-SKDGE-LRNTLNKHKGPIFSLKWNKKGDCLLSGSVDKTAIIWDAKTGESKQQFEFH------SAPTLDVDWRNNVSFATCSTDKMIYVCKFGENRPIKTFSGHQDEVNAIKWDPTGTLLAS--CSDDFTAKIW
A9NPC1________________IKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLP-----------------AHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSV--TNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SSRs (tot: 1)

Start position	End position	Sequence	Length
19	36	TGAACG TGAACG TGAACG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain