SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210246

Length: 535 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene210246
TTTAGAGGCCAACCACGGAGGCATTTGCTAACCACTGGGTGGAGCGTTTTTGTCAGCTCAAAGAGACTGGTAGCAGGAGATGCTTTTCATATTCTTGAGGGGTGAAAGTGGAGAACTGCGTGTTGGAGTTAGGCGTGCTATGCGTCAGTCAGACTAACATGCCATCATCGGTTTTATCTAGTCACAGCATGCATCTTGGTGTCATTGCAACTGCATCACATGCAGTTACAACGAAGACCATGTTTAGTGTCTATTATAAACCAAGGACAAGCCCATCAGAGTTCATAATTCCTTATGATCAATATATGGAGTCAATGAAAATCAATTTCTCGGTTGGAATGAGATTCAAGATGAAGTTTGAAGGGGAAGAAGTCCCAGAGCAAAGATTTACTGGAACCATTGTTGGAATAAGTGATGCTGATCCTGTGAACTGGCCGAATTCAAAGTGGAGATGCCTCAAGGTACAATGGGATGAAATATCAGCAATTGCACGACCAGAGAGAGTTTCCACTTTGATGCTGATCCTGTGAACTGG

Ace file of the UniGene sp_v3.0_unigene210246 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative auxin response factor 2/1/9 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY0_CYCRU	-	-	0.0	78%
FL-Next	tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine).	-	-	0.0	96%
Sma3	Auxin response factor, putative	-	-	3.614e-25	-

Source	Gene names
Sma3	ARF1; ARF11; ARF12; ARF13; ARF14; ARF15; ARF16; ARF17; ARF18; ARF19; ARF2; ARF21; ARF22; ARF23; ARF24; ARF25; ARF3; ARF4; ARF5; ARF6; ARF6A; ARF6B; ARF7; ARF7A; ARF7B; ARF8; ARF9; AT4G23980; At1g19850; At1g30330; At1g34170; At1g34390; At1g34410; At1g35520

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	negative regulation of cell proliferation	GO:0008285	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	phototropism	GO:0009638	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to hormone stimulus	GO:0009725	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	blue light signaling pathway	GO:0009785	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	longitudinal axis specification	GO:0009942	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	lateral root primordium development	GO:0010386	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	meristem development	GO:0048507	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62000.1	ARF2, ARF1-BP, HSS, ORE14 auxin response factor 2 chr5:24910859-24914680 FORWARD LENGTH=859	71%
RefSeq	Arabidopsis thaliana	NP_201006.2	auxin response factor 2 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002318767.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E1UHY2

Fln msg: Separated hits, possible frame ERROR between 84 and 111, Unexpected STOP codon at 3' end. Distance to subject end: 511 aas, your sequence is shorter than subject: 177 - 919

Fln protein: FRGQPRRHLLTTGWSVFVSSKRLVAGDxxxxxxxxxxENCVLELGVLCVSQTNMPSSVLSSHSMHLGVIATASHAVTTKTMFSVYYKPRTSPSEFIIPYDQYMESMKINFSVGMRFKMKFEGEEVPEQRFTGTIVGISDADPVNWPNSKWRCLKVQWDEISAIARPERVSTLMLIL*

Protein Length: 178

Fln nts: TTTAGAGGCCAACCACGGAGGCATTTGCTAACCACTGGGTGGAGCGTTTTTGTCAGCTCAAAGAGACTGGTAGCAGGAGATGCxxxxxxxxxxxxxxxxxxxxxxxxxxxGGAGAACTGCGTGTTGGAGTTAGGCGTGCTATGCGTCAGTCAGACTAACATGCCATCATCGGTTTTATCTAGTCACAGCATGCATCTTGGTGTCATTGCAACTGCATCACATGCAGTTACAACGAAGACCATGTTTAGTGTCTATTATAAACCAAGGACAAGCCCATCAGAGTTCATAATTCCTTATGATCAATATATGGAGTCAATGAAAATCAATTTCTCGGTTGGAATGAGATTCAAGATGAAGTTTGAAGGGGAAGAAGTCCCAGAGCAAAGATTTACTGGAACCATTGTTGGAATAAGTGATGCTGATCCTGTGAACTGGCCGAATTCAAAGTGGAGATGCCTCAAGGTACAATGGGATGAAATATCAGCAATTGCACGACCAGAGAGAGTTTCCACTTTGATGCTGATCCTGTGAACTGG

Fln Alignment:

uma_euler_10686___FRGQPRRHLLTTGWSVFVSSKRLVAGDAxxxxxxxxxENCVLELGVLCVSQ--TNMPSSVLSSHSMHLGVIATASHAVTTKTMFSVYYKPRTSPSEFIIPYDQYMESMKINFSVGMRFKMKFEGEEVPEQRFTGTIVGISDADPVNWPNSKWRCLKVQWDEISAIARPERVS
E1UHY2________________FRGQPRRHLLTTGWSVFVSYKRLVAGDAxxxxxxxxxENGELRLGIRRASQQQSSVPSSVLSSHGIHSGVLAAVAHAVATKSMFHIYYNPRTSPTEFVIPYHKYVKSFNHSFSIGMRFKMRFETEDATERRYTGTIVGIGDVDPMRWPNSRWRSFKVGWDEHAAQERQDRVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain