SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210187

Length: 396 nt

UniGene Fasta

>sp_v3.0_unigene210187
TACAGTTGCAACATTGGCAGAAGAGACTAAAAATCCTAAAAGGGACATTCCTATTGGACTTATTGGATCCATGTTGATCATCATAGTGATCTACTGTCTCATGGCTCTCACATTATGCCTCATGCAATACTACAAAGCCATTGATCCTGACGCTGCATACAGTTCTGTATTCACATCAGTGGGAATGGATTGGGCTAAATACATAGTAGCCTTAGGAGCCCTTGAGGGCATGACCACTGTCCTAATGGTGGGTGTTGTAGGCCAAGCCAGGTATCTGACCCACATTGCAAGGACACATATGTTCCCACCCTGGTTTGCATTGGTGCATGAGAAAACAGGAACTCCAGTCAATGCAACTGCCGTAATGATCATTGCCACAGCAGTTATAGCATTTTT

Ace file of the UniGene sp_v3.0_unigene210187

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cationic amino acid transporter n=2 Tax=Populus RepID=B9GYF7_POPTR	-	-	1.0e-38	68%
FL-Next	sp=Cationic amino acid transporter 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Sma3	Cationic amino acid transporter	-	-	2.138e-28	-

Source	Gene names
Sma3	AOC5; AOC6; AT4g21120; At1g17120; At2g34960; At3g10600; At4g21120; At5g04770; B1018E06.14; B1394A07.6; CAT5.1; CAT5.2; CAT5.3; CHLREDRAFT_205765; CHLREDRAFT_206100; F13M14.11; F18K10.21; F20D23.19; F7J7.60; GSVIVT00009349001; GSVIVT00013821001; GSVIVT0002

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	L-glutamate transmembrane transporter activity	GO:0005313	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	arginine transmembrane transporter activity	GO:0015181	Molecular Function	-
Sma3	L-lysine transmembrane transporter activity	GO:0015189	Molecular Function	-
Sma3	cationic amino acid transmembrane transporter activity	GO:0015326	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	amino acid transport	GO:0006865	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	L-arginine import	GO:0043091	Biological Process	-
Sma3	L-glutamate import	GO:0051938	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Opsin	IPR001760	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Cationic amino acid transport permease	IPR004755	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Cationic amino acid transporter	IPR015606	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G34960.1	CAT5 cationic amino acid transporter 5 chr2:14744175-14745884 REVERSE LENGTH=569	75%
RefSeq	Arabidopsis thaliana	NP_181041.1	cationic amino acid transporter 5 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002303714.1	cationic amino acid transporter [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O64759

Fln msg: Distance to subject end: 162 aas, your sequence is shorter than subject: 131 - 569

Fln protein: TVATLAEETKNPKRDIPIGLIGSMLIIIVIYCLMALTLCLMQYYKAIDPDAAYSSVFTSVGMDWAKYIVALGALEGMTTVLMVGVVGQARYLTHIARTHMFPPWFALVHEKTGTPVNATAVMIIATAVIAF

Protein Length: 132

Fln nts: TACAGTTGCAACATTGGCAGAAGAGACTAAAAATCCTAAAAGGGACATTCCTATTGGACTTATTGGATCCATGTTGATCATCATAGTGATCTACTGTCTCATGGCTCTCACATTATGCCTCATGCAATACTACAAAGCCATTGATCCTGACGCTGCATACAGTTCTGTATTCACATCAGTGGGAATGGATTGGGCTAAATACATAGTAGCCTTAGGAGCCCTTGAGGGCATGACCACTGTCCTAATGGTGGGTGTTGTAGGCCAAGCCAGGTATCTGACCCACATTGCAAGGACACATATGTTCCCACCCTGGTTTGCATTGGTGCATGAGAAAACAGGAACTCCAGTCAATGCAACTGCCGTAATGATCATTGCCACAGCAGTTATAGCATTTTT

Fln Alignment:

uma_euler_23744___TVATLAEETKNPKRDIPIGLIGSMLIIIVIYCLMALTLCLMQYYKAIDPDAAYSSVFTSVGMDWAKYIVALGALEXXXXXXXXXXXXQARYLTHIARTHMFPPWFALVHEKTGTPVN
O64759________________SIATMAEETKNPSRDIPIGLLGSMSIITVIYCLMALSLSMMQKYTDIDPNAAYSVAFQSVGMKWGKYLVALGALKGMTTVLLVGALGQARYVTHIARTHMIPPIFALVHPKTGTPIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain