SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210025

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene210025
TACGATTGTCTGCTGCTGCTGAAGCCCCAAGTGGAGAGGGCGGCCATTGTCGAGCTTCTCTCTCGTTTGGGAAGGCGCGTTTATTCATTAAACGGAGTCGTGACAGATATCAAGTCATTCGGAAAGGTGTATTTGGGTTACGGCATCAAGAAGCTCGACGGCAGATACTATCAGGGTCAAATGATGCAGATGACAATGATGGTCACTCCAAAATTTCCCAAGGAGTTAGAATACCTGAACAAGGATGA

Ace file of the UniGene sp_v3.0_unigene210025

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	small subunit ribosomal protein S6 [Arabidopsis thaliana] dbj\|BAB01802.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM67031.1\| unknown [Arabidopsis thaliana] dbj\|BAC42712.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50729.1\| unknown protein [A	-	-	1.0e-19	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	At3g18760; At3g18760/MVE11_12; GSVIVT00005623001; Os01g0220300; P0483F08.18; PHYPADRAFT_123995; POPTRDRAFT_262842; RCOM_0701550;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation elongation factor EF1B/ribosomal protein S6	IPR014717	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G18760.1	Translation elongation factor EF1B/ribosomal protein S6 family protein chr3:6457930-6459558 REVERSE LENGTH=139	3.0e-27	63%
RefSeq	Arabidopsis thaliana	NP_566618.1	small subunit ribosomal protein S6 [Arabidopsis thaliana]	4.0e-27	63%
RefSeq	Populus trichocarpa	XP_002325157.1	predicted protein, partial [Populus trichocarpa]	6.0e-29	68%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKL3

Fln msg: Distance to subject end: 77 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 82 - 163

Fln protein: YDCLLLLKPQVERAAIVELLSRLGRRVYSLNGVVTDIKSFGKVYLGYGIKKLDGRYYQGQMMQMTMMVTPKFPKELEYLNKD

Protein Length: 83

Fln nts: TACGATTGTCTGCTGCTGCTGAAGCCCCAAGTGGAGAGGGCGGCCATTGTCGAGCTTCTCTCTCGTTTGGGAAGGCGCGTTTATTCATTAAACGGAGTCGTGACAGATATCAAGTCATTCGGAAAGGTGTATTTGGGTTACGGCATCAAGAAGCTCGACGGCAGATACTATCAGGGTCAAATGATGCAGATGACAATGATGGTCACTCCAAAATTTCCCAAGGAGTTAGAATACCTGAACAAGGATGA

Fln Alignment:

uma_euler_20618___YDCLLLLKPQVERAAIVELLSRLGRRVYSLNGVVTDIKSFGKVYLGYGIKKLDGRYYXXXXXXXXXXVTPKFPKELEYLNKD
A9NKL3________________YDCMLLLKPQVERAAIVELLSRLGRRVYSLNGVVTDIKSFGKVYLGYGIRKLDGRYYQGQMMQMTMMVTPKFHKELEYLNKD

SSRs (tot: 1)

Start position	End position	Sequence	Length
10	21	CTG CTG CTG CTG	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain