SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209874

Length: 303 nt

UniGene Fasta

>sp_v3.0_unigene209874
CGTCGTGACCTTGGCTGTCAAAGATGTCAATGAACTGGAACTTCCACCGTTCCACTACGTGCCGCGACTTTACAAAGGTCCCTCCGCCGATGAGGTTTTGCAAAAGAGGAAGAAGTTCCTCGGCTCCTCAGTCTTTTATTATTACCAGAAGCCTGTAAGTCGATTCCTCCTCGTTTTGCTCATTTTAAAATACATTCAAGTTTCAAAACCCTTGTTCTTTTTAATATATGGGCGTCTCGAATTTCCTCTGACATAAATATCACACCTGTGATTTGCATGTAATTATAAGTATATAGTCTCAGG

Ace file of the UniGene sp_v3.0_unigene209874

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alanine:glyoxylate aminotransferase 2 homolog [Arabidopsis thaliana]	-	-	1.0e-10	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	ECs	Term	Type	e value	Identity
Sma3	Alanine--glyoxylate transaminase.	EC:2.6.1.44	-	5.875e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	5.875e-07	%
Sma3	Glycine, serine and threonine metabolism	00260	5.875e-07	%
Sma3	Metabolic pathways	01100	5.875e-07	%

Source	Gene names
Sma3	AGT2; At4g39660; GSVIVT00019422001; LOC_Os03g07570; Os03g0171900; OsI_10205; OsJ_09593; POPTRDRAFT_1082658; RCOM_0193980; T19P19.50; VITISV_012436;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	alanine-glyoxylate transaminase activity	GO:0008453	Molecular Function	-
Sma3	transaminase activity	GO:0008483	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	photorespiration	GO:0009853	Biological Process	-
Sma3	arginine catabolic process to glutamate	GO:0019544	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminotransferase class-III	IPR005814	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G39660.1	AGT2 alanine:glyoxylate aminotransferase 2 chr4:18406797-18409262 FORWARD LENGTH=476	2.0e-14	75%
RefSeq	Arabidopsis thaliana	NP_568064.1	alanine:glyoxylate aminotransferase 2 [Arabidopsis thaliana]	2.0e-14	75%
RefSeq	Populus trichocarpa	XP_002310591.1	predicted protein [Populus trichocarpa]	6.0e-16	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW66

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 348 aas, your sequence is shorter than subject: 85 - 482

Fln protein: VVTLAVKDVNELELPPFHYVPRLYKGPSADEVLQKRKKFLGSSVFYYYQKPVSRFLLVLLILKYIQVSKPLFFLIYGRLEFPLT*

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCAAAGATGTCAATGAACTGGAACTTCCACCGTTCCACTACGTGCCGCGACTTTACAAAGGTCCCTCCGCCGATGAGGTTTTGCAAAAGAGGAAGAAGTTCCTCGGCTCCTCAGTCTTTTATTATTACCAGAAGCCTGTAAGTCGATTCCTCCTCGTTTTGCTCATTTTAAAATACATTCAAGTTTCAAAACCCTTGTTCTTTTTAATATATGGGCGTCTCGAATTTCCTCTGACATAAATATCACACCTGTGATTTGCATGTAATTATAAGTATATAGTCTCAGG

Fln Alignment:

uagpf_euler_4675___ELPPFHYVPRLYKGPSADEVLQKRKKFLGSSVFYYYQKPVS
A9NW66________________QMPAFDYKPQPYTGPLADEILKKRKQFLGPSNFYFYDKPLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain