SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209837

Length: 335 nt

UniGene Fasta

>sp_v3.0_unigene209837
TTTGCCAGCGATAACAAGAGTATAGTCGCCAATATGGCAACTCGTCTCCGTGTGAGCACTGTTATTCTATGGTTTGCTTTTTCCCTTTCTGCTCTTTCCATCTGCCGTGGAGCTGTTTCGGATATTGCTACCCAAGATTTCTTCAATGGAATTATATCTGCCGCTGCTGATGGCTGCGCAGGAAAGACCTTCTATACATACAGTGACTTCATTAGTGCGGCCAATTCATTTTCTAGCTTTGGCACAACTGGAACCTCCGATGACAACAAGAGAGAAATTGCTGCTTTCTTCGCCAATGTTGCTCACGAGACTAGCAATCTGTGCTACGTTGAGGA

Ace file of the UniGene sp_v3.0_unigene209837

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class II chitinase 2-3 n=1 Tax=Pseudotsuga menziesii RepID=D7P706_PSEMZ	-	-	7.0e-31	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Chromosome chr5 scaffold_72, whole genome shotgun sequence	-	-	3.498e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chitinase.	EC:3.2.1.14	-	8.099e-20	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		8.099e-20	%

Source	Gene names
Sma3	At3g54420; CHI4; CHIV; Ch4A; Chi; Chi4; Chi4C; Chi4D; Cht2; EP3; GSVIVT00034626001; GSVIVT00034628001; GSVIVT00034631001; GSVIVT00034632001; GSVIVT00034634001; GSVIVT00034636001; GSVIVT00034638001; GSVIVT00034640001; GSVIVT00034642001; GSVIVT00034646001;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54420.1	ATEP3, ATCHITIV, CHIV, EP3 homolog of carrot EP3-3 chitinase chr3:20145935-20147034 FORWARD LENGTH=273	3.0e-19	56%
RefSeq	Arabidopsis thaliana	NP_191010.1	chitinase [Arabidopsis thaliana]	4.0e-19	56%
RefSeq	Populus trichocarpa	XP_002326041.1	predicted protein [Populus trichocarpa]	1.0e-20	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ29

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 100 - 231

Fln protein: MATRLRVSTVILWFAFSLSALSICRGAVSDIATQDFFNGIISAAADGCAGKTFYTYSDFISAANSFSSFGTTGTSDDNKREIAAFFANVAHETSNLCYVE

Protein Length: 101

Fln nts: TTTGCCAGCGATAACAAGAGTATAGTCGCCAAT_-_ATGGCAACTCGTCTCCGTGTGAGCACTGTTATTCTATGGTTTGCTTTTTCCCTTTCTGCTCTTTCCATCTGCCGTGGAGCTGTTTCGGATATTGCTACCCAAGATTTCTTCAATGGAATTATATCTGCCGCTGCTGATGGCTGCGCAGGAAAGACCTTCTATACATACAGTGACTTCATTAGTGCGGCCAATTCATTTTCTAGCTTTGGCACAACTGGAACCTCCGATGACAACAAGAGAGAAATTGCTGCTTTCTTCGCCAATGTTGCTCACGAGACTAGCAATCTGTGCTACGTTGAGGA

Fln Alignment:

Tip_euler_5614___MATRLRVSTVILWFAFSLSALSICRGAVSDIATQDFFNGIISAAADGCAGKTFYTYSDFISAANXXXXXXXXXXXDDNKREIAAFFANVAHETSNLCYVE
C0PQ29________________MATHFRVNVIFLWLAFALSALSICRGAVSDIATQDFFNGILSAATDGCAGKTFYTYTDFINAANSFSSFGTTGTSDDNKREIAAFFANVAHETSNLCYVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain