SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209835

Length: 543 nt

UniGene Fasta

>sp_v3.0_unigene209835
AGTTTGAAACACTAAGGTGTTTCTATTGGGTTTCCTCCTAGCATTTGAAGTGGTGGATTTTCTTAGAGCTTTCTAGGTCATGGGATTCCCTGCAGGCTTCTACGGTCTGGCTCTCCCCACACTGTTGTTTCACCTCGCATTCACGTTATTTTATATAAAGGCTGCGATGAATTGGGCTCTTCAGTTTTCTGGTTTAGCTGACTCTCGAGAACTTGACGGCTCTTCGTGGCCAGATTCCCCTGATATCAACTCCTCTTCCGTTGGACCTTCAATCTCTGCTGATACGATTAGAAAGAACTTGCCGATTGTAACATTCGGGAAGTTTGGGGAGAGATTTTGTGAGTCGTTAGGGGATGACATTAAATGTGCCGTGTGCTTGAACTCCTTCCAGGAAGAGGAGCACATCAGAGAATTGTGCAATTGCCATCATGTATTTCACAGGAATTGTCTGGATAAGTGGCTTGATTATTGTCAGACAACATGCCCTCTCTGCAGATCGTCTCTGATGCCGGAGAGGATACTCGATAGGGATGTGAGTAAATC

Ace file of the UniGene sp_v3.0_unigene209835

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	brassinosteroid-responsive RING-H2 [Arabidopsis thaliana] ref\|XP_002878382.1\| brassinosteroid-responsive ring-H2 [Arabidopsis lyrata subsp. lyrata] gb\|AAD27870.1\|AF134155_1 BRH1 RING finger protein [Arabidopsis thaliana] emb\|CAB71076.1\| RING finger protei	-	-	5.0e-22	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	Gene names
Sma3	POPTRDRAFT_566707; POPTRDRAFT_584601; VITISV_033303;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTT7

Fln msg: Distance to subject end: 26 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 154 - 189

Fln protein: MGFPAGFYGLALPTLLFHLAFTLFYIKAAMNWALQFSGLADSRELDGSSWPDSPDINSSSVGPSISADTIRKNLPIVTFGKFGERFCESLGDDIKCAVCLNSFQEEEHIRELCNCHHVFHRNCLDKWLDYCQTTCPLCRSSLMPERILDRDVSK

Protein Length: 155

Fln nts: AGTTTGAAACACTAAGGTGTTTCTATTGGGTTTCCTCCTAGCATTTGAAGTGGTGGATTTTCTTAGAGCTTTCTAGGTC_-_ATGGGATTCCCTGCAGGCTTCTACGGTCTGGCTCTCCCCACACTGTTGTTTCACCTCGCATTCACGTTATTTTATATAAAGGCTGCGATGAATTGGGCTCTTCAGTTTTCTGGTTTAGCTGACTCTCGAGAACTTGACGGCTCTTCGTGGCCAGATTCCCCTGATATCAACTCCTCTTCCGTTGGACCTTCAATCTCTGCTGATACGATTAGAAAGAACTTGCCGATTGTAACATTCGGGAAGTTTGGGGAGAGATTTTGTGAGTCGTTAGGGGATGACATTAAATGTGCCGTGTGCTTGAACTCCTTCCAGGAAGAGGAGCACATCAGAGAATTGTGCAATTGCCATCATGTATTTCACAGGAATTGTCTGGATAAGTGGCTTGATTATTGTCAGACAACATGCCCTCTCTGCAGATCGTCTCTGATGCCGGAGAGGATACTCGATAGGGATGTGAGTAAATC

Fln Alignment:

Tip_euler_421___FPAGFYGLALPTLLFHLAFTLFYIKAAMNWALQFSGLADSRELD--GSSWP----DSPDINSSSVGPSISADTIRKNLPIVTFGKFGERFCESLGDDIKCAVCLNSFQEEEHIRELCNCHHVFHRNCLDKWLDYCQTTCPLCRSSLMPE
A9NTT7________________FPTTVSEGVLPILIVNTALSFAIIKDILRSFLQIVGLTTGTEPDFIDPSWPYPPENTPAVSTGHSEAQFIAEEIRQSLPIKRFQSFTDGFVGSDNSHVECAVCLSKFEEGVEIRQL-TCCHLFHRPCLDKWLDHQQITCPLCRSCLISE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain