SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209779

Length: 282 nt

UniGene Fasta

>sp_v3.0_unigene209779
TGATTCCATTCTCAGATAGTTTTTGTTCGTTTAAACCTTTTCATACATTTGCAAGTTTTAGAACATTGCATCATCGTACCCCATTAATATGCCAATCTCACAGTCATGCCGGTTAGATTTCACATGAAGATGGCGGGCAGTGTGAGCAGAACAGTGTGCGTCACGGGAGCTGCTGGGTTCATAGGGTCATGGCTCATCATGCGATTGCTTGAGCGAGGATATAGTGTTAGAGCAACTGTGCGAGACACTGGTAATCCTGTAAAGACAAAGCATCTGTTGGAT

Ace file of the UniGene sp_v3.0_unigene209779

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dihydroflavonal-4-reductase 2 n=2 Tax=Medicago truncatula RepID=Q6TQT0_MEDTR	-	-	2.0e-14	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Dihydroflavonol 4-reductase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	8.547e-36	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	8.547e-36	%
Sma3	Biosynthesis of phenylpropanoids	01061	8.547e-36	%
Sma3	Metabolic pathways	01100	8.547e-36	%
Sma3	Biosynthesis of secondary metabolites	01110	8.547e-36	%

Source	Gene names
Sma3	A; A1; A1 (Teosinte); A1* (second gene); A1* (second gene)/ (Teosinte); A1-a; A1-b; AN6; ANT18; At5g42800; CAD; CtDFR; DFR; DFR-A; DFR-B; DFR-BN-1; DFR-BO-1; DFR-BR-1; DFR-C; DFR-FL2; DFR1; DFR2; DFR3; DFR4; DFR5; DFRA; DbDFR; Dfr1; Dfr2; EgDFR; F; FrDFR;

Source	GOs	Term	Type	Identity
Sma3	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	isomerase activity	GO:0016853	Molecular Function	-
Sma3	dihydrokaempferol 4-reductase activity	GO:0045552	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G42800.1	DFR, TT3, M318 dihydroflavonol 4-reductase chr5:17164296-17165864 REVERSE LENGTH=382	5.0e-18	77%
RefSeq	Arabidopsis thaliana	NP_199094.1	dihydroflavonol-4-reductase [Arabidopsis thaliana]	6.0e-18	77%
RefSeq	Populus trichocarpa	XP_002300759.1	dihydroflavonol 4-reductase [Populus trichocarpa]	4.0e-17	71%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNS2

Fln msg: Distance to subject end: 134 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 59 - 213

Fln protein: MPVRFHMKMAGSVSRTVCVTGAAGFIGSWLIMRLLERGYSVRATVRDTGNPVKTKHLLD

Protein Length: 60

Fln nts: TGATTCCATTCTCAGATAGTTTTTGTTCGTTTAAACCTTTTCATACATTTGCAAGTTTTAGAACATTGCATCATCGTACCCCATTAATATGCCAATCTCACAGTC_-_ATGCCGGTTAGATTTCACATGAAGATGGCGGGCAGTGTGAGCAGAACAGTGTGCGTCACGGGAGCTGCTGGGTTCATAGGGTCATGGCTCATCATGCGATTGCTTGAGCGAGGATATAGTGTTAGAGCAACTGTGCGAGACACTGGTAATCCTGTAAAGACAAAGCATCTGTTGGAT

Fln Alignment:

Tip_euler_1396___TVCVTGAAGFIGSWLIMRLLERGYSVRATVRDTGNPVKTKHLLD
B8LNS2________________TVCVTGAAGFIGSWLVMRLLERGYTVRTAVRDTGNPVKTKHLLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain