SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209733

Length: 455 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene209733 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana] ref\|NP_850700.1\| bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana] emb\|CAB88360.1\| putative p	-	-	4.0e-24	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Lipid binding protein	-	-	1.956e-07	-

Source	Gene names
Sma3	At3g53980; F5K20_280; GSVIVT00018370001; POPTRDRAFT_770285; POPTRDRAFT_820375; POPTRDRAFT_825296; RCOM_1483220; VITISV_021194;

Source	GOs	Term	Type	e value	Identity
Sma3	peptidase activity	GO:0008233	Molecular Function	0.0	-
Sma3	lipid transport	GO:0006869	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR003612	-	0.0	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53980.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein chr3:19987760-19988203 REVERSE LENGTH=114	4.0e-32	54%
RefSeq	Arabidopsis thaliana	NP_850700.1	bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana]	6.0e-32	54%
RefSeq	Populus trichocarpa	XP_002315191.1	predicted protein [Populus trichocarpa]	5.0e-30	56%

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
44	59	CAGCC CAGCC CAGCC C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain