SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209729

Length: 496 nt

UniGene Fasta

>sp_v3.0_unigene209729
GTTGATTAGGTTTCTTGATTTTCATGTCAGAGTTTAGGTGTGTAATGTCCCATCCAAATAGCTGTTCTGTTCTGTTAGCCCCGGTCTGAGTAGGTGACTTGATTGTTTGGAGGAGAAAACAAAGAGGAGTGACCAGAATGGTGAGAGGAAAAACCGAGATGAAGAGGATTGAGAACACCAGCAGCAGGCAAGTTACGTTTACTAAGGGTTTGCTGAAGAAAGCTTACGAGCTCTCAGTGCTCTGCGATGCGGAAATTGGACTCGTGGTTTTCTCTCCAAGAGGCAAGCTCCATGAATTCGCCAGTCCCAGTATGCAGAAAATTTTGGAGAGGTATCATGGTACAACTGATATCACTAAAGAACAAGATAATGAGGAATTAAAGAGGAGAATTGCAAATATGAAAGATAGAATTAGGATTCTCCAATCAACACAGAGTTGCAGAAAAATGGTGGGGGAGGAGCTAGCGACATGTTCAATGATGGAATTAAATGAGCT

Ace file of the UniGene sp_v3.0_unigene209729

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative MADS box transcription factor PrMADS9 [Pinus radiata]	-	-	8.0e-37	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	MADS-box transcription factor	-	-	5.914e-14	-

Source	Gene names
Sma3	AG; AGL14; AGL16; AGL19; AGL20; AGL21; AGL28; AGL3; AGL30; AGL34; AGL38; AGL4; AGL5; AGL6-1; AGL6a; AGL6b; AGL7; AGL8; AOM4; AT5G62165; ApMADS3; At2g45660; At4g11880; At4g22950; At5g51870; At5g62165; CAGL2; CiSEP1; F17K2.19; F7H19.130; FBP20; FBP21; FBP22

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	vernalization response	GO:0010048	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45660.1	AGL20, SOC1, ATSOC1 AGAMOUS-like 20 chr2:18807799-18810193 REVERSE LENGTH=214	3.0e-35	52%
RefSeq	Arabidopsis thaliana	NP_182090.1	MADS-box protein SOC1 [Arabidopsis thaliana]	4.0e-35	52%
RefSeq	Populus trichocarpa	XP_002302552.1	MIKC mads-box transcription factor SOC1 [Populus trichocarpa]	2.0e-34	53%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2G7

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 119 - 201

Fln protein: MVRGKTEMKRIENTSSRQVTFTKGLLKKAYELSVLCDAEIGLVVFSPRGKLHEFASPSMQKILERYHGTTDITKEQDNEELKRRIANMKDRIRILQSTQSCRKMVGEELATCSMMELNE

Protein Length: 120

Fln nts: GTTGATTAGGTTTCTTGATTTTCATGTCAGAGTTTAGGTGTGTAATGTCCCATCCAAATAGCTGTTCTGTTCTGTTAGCCCCGGTCTGAGTAGGTGACTTGATTGTTTGGAGGAGAAAACAAAGAGGAGTGACCAGA_-_ATGGTGAGAGGAAAAACCGAGATGAAGAGGATTGAGAACACCAGCAGCAGGCAAGTTACGTTTACTAAGGGTTTGCTGAAGAAAGCTTACGAGCTCTCAGTGCTCTGCGATGCGGAAATTGGACTCGTGGTTTTCTCTCCAAGAGGCAAGCTCCATGAATTCGCCAGTCCCAGTATGCAGAAAATTTTGGAGAGGTATCATGGTACAACTGATATCACTAAAGAACAAGATAATGAGGAATTAAAGAGGAGAATTGCAAATATGAAAGATAGAATTAGGATTCTCCAATCAACACAGAGTTGCAGAAAAATGGTGGGGGAGGAGCTAGCGACATGTTCAATGATGGAATTAAATGAGCT

Fln Alignment:

Tall_8m_euler_6264___MVRGKTEMKRIENTSSRQVTFTK---GLLKKAYELSVLCDAEIGLVVFSPRGKLHEFASPSMQKILERYHGTTDITKEQDNEELKRRIANMKDRIRILQSTQSCRKMVGEELATCSMMELNE
A9P2G7________________MVRGKTQMKRIENASRRQVTFSKRRNGLLKKAYELSVLCDAEVGLMIFSSSGKLHEFASPSMQKMVERHHSTHNTTNEQDNKGLNRKITNMEEKIRILELTQ--RKMSGEDLRTCSMKELNQ

SSRs (tot: 1)

Start position	End position	Sequence	Length
62	76	CTGTT CTGTT CTGTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain