SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209691

Length: 823 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene209691 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Plastidic phosphate translocator-like protein1 n=1 Tax=Mesembryanthemum crystallinum RepID=Q59IV6_MESCR	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Plastidic phosphate translocator-like protein1	-	-	7.451e-11	-

Source	Gene names
Sma3	AT2G25520; AT4g32390; At2g25520; At3g17430; At3g17430/MTO12.2; At4g32390; At5g11230; At5g25400; CHLREDRAFT_135100; CHLREDRAFT_186850; CHLREDRAFT_191102; CHLREDRAFT_192150; EZY14; F2I11_120; F8B4.90; GSVIVT00016883001; GSVIVT00019714001; GSVIVT00032633001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Peroxisomal biogenesis factor 11	IPR008733	-	-
Sma3	Basic leucine zipper	IPR011700	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25520.1	Drug/metabolite transporter superfamily protein chr2:10860950-10861993 FORWARD LENGTH=347	69%
RefSeq	Arabidopsis thaliana	NP_180122.1	putative phosphate/phosphoenolpyruvate translocator protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002309616.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
114	126	ACC ACC ACC ACC A	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain