SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209544

Length: 940 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene209544 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 pdb\|2IX6\|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 pdb\|2IX6\|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, A	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Glutaryl-CoA dehydrogenase	-	-	1.949e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acyl-CoA oxidase.	EC:1.3.3.6	-	1.519e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	1.519e-06	%
Sma3	alpha-Linolenic acid metabolism	00592	1.519e-06	%
Sma3	Biosynthesis of unsaturated fatty acids	01040	1.519e-06	%
Sma3	Biosynthesis of plant hormones	01070	1.519e-06	%
Sma3	Metabolic pathways	01100	1.519e-06	%

Source	Gene names
Sma3	ACX4; At3g51840; CHLREDRAFT_111185; CHLREDRAFT_40101; G6; GSVIVT00038876001; OSJNBb0099P06.11; Os01g0159400; Os05g0163700; Os06g0346300; Os06g0347100; OsI_00496; OsI_18581; OsI_22875; OsI_22876; OsJ_00462; OsJ_17232; OsJ_21259; OsJ_21262; P0041E11.16; PHY

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	glyoxysome	GO:0009514	Cellular Component	-
Sma3	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	-
Sma3	acyl-CoA oxidase activity	GO:0003997	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-CH group of donors	GO:0016627	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	fatty acid beta-oxidation	GO:0006635	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	short-chain fatty acid metabolic process	GO:0046459	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3		IPR013764	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51840.1	ACX4, ATSCX, ATG6 acyl-CoA oxidase 4 chr3:19225653-19229008 REVERSE LENGTH=436	79%
RefSeq	Arabidopsis thaliana	NP_190752.1	acyl-coenzyme A oxidase 4 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002308225.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUS2

Fln msg: your sequence is shorter than subject: 231 - 429

Fln protein: ADLLIVFARNTTTNQINGFIVRKGAPGLRVTKIENKIGLRCVQNGDILLKGVFVADEDRLPDINSFQDTNRVLAVSRVMVAWQPIGIAMGVYDMCHRYLQERKQFGVSLNSFQINQEKLVRMLGNIQAMTLMGWRLCKLYDDGNMTPGHASLTKAWNTLKAREVVSLGRELLGGNGILTDFLVAKAFCDLEPIYSYEGTYEVNSLVTGREVTGIASFKAPPARKQLTAKL*

Protein Length: 232

Fln nts: GCAGACTTACTTATAGTTTTTGCGAGGAATACAACCACAAATCAAATCAACGGGTTTATTGTGAGAAAGGGTGCTCCTGGGCTAAGGGTAACAAAAATAGAGAATAAAATTGGGCTGAGGTGTGTTCAGAATGGGGACATTCTTTTGAAAGGTGTTTTTGTTGCTGACGAAGATAGATTGCCAGATATCAATTCCTTTCAAGATACAAACAGGGTTCTTGCTGTATCACGTGTGATGGTTGCTTGGCAGCCCATTGGTATCGCAATGGGTGTCTATGATATGTGTCACAGGTATTTACAGGAAAGAAAGCAGTTTGGAGTGTCATTAAATTCTTTCCAAATCAACCAAGAAAAACTCGTTCGTATGTTGGGTAACATTCAAGCCATGACCTTAATGGGATGGCGACTGTGTAAGTTGTACGATGATGGAAATATGACTCCAGGACATGCCAGCTTAACCAAGGCATGGAATACCTTGAAAGCGAGGGAGGTGGTCTCTTTGGGACGAGAATTGCTTGGTGGAAATGGAATCTTAACTGACTTTCTAGTGGCTAAGGCGTTTTGTGATTTAGAACCTATATACTCATATGAAGGAACATATGAAGTCAATTCACTGGTCACTGGGCGAGAAGTTACTGGAATTGCAAGTTTTAAAGCACCCCCGGCTCGTAAACAATTAACTGCAAAGTTGTAG___GTACAATTCAGCTACGATGGAAAACTTCATTGTCAGTATTGCTGGTTATCTAGAGGCGTTACTGACAAGGCATAAATTTAGGGTGAGTTGAAAAGGGCAATGCAGCCCTAAAACTCTAGCAGCAAATAATTATGGACCAGCCTTTGTACGATGTTTTATGATAGAACGATTCCTAAATGAGTGACTTCCAAAATGGATAAACATGGAATTGAGATAGGCATCCAAAGCAAGAATCCAAATGCAGGCC

Fln Alignment:

Root_euler_4146___ADLLIVFARNTTTNQINGFIVRKGAPGLRVTKIENKIGLRCVQNGDILLKGVFVADEDRLPDINSFQDTNRVLAVSRVMVAWQPIGIAMGVYDMCHRYLQERKQFGVSLNSFQINQEKLVRMLGNIQAMTLMGWRLCKLYDDGNMTPGHASLTKAWNTLKAREVVSLGRELLGGNGILTDFLVAKAFCDLEPIYSYEGTYEVNSLVTGREVTGIASFKAPPARKQLTAKL
A9NUS2________________ADILVVFARNITTNQINGFIVRKGTPGLRVTKIENKIGLRCVQNGDILLKGVFVADEDRLPGIDSFQDTSKVLAVSRIMVSWQPIGIAMGVYDMCHRYLQERKQFGVSLNSFQISQEKLIRMLGNIQAMNLMGWRLCKLYDDGKMTPGHASLTKAWNTLKAREVVSLGRELLGGNGILTDFLVAKAFCDLEPIYSYEGTYEVNSLVTGREVTGTASFKAPPARKLLTAKL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain